mRNA_H-elongata_contig119931.1540.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig119931.1540.1 vs. uniprot
Match: D7FLZ5_ECTSI (40S ribosomal protein S4 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLZ5_ECTSI) HSP 1 Score: 284 bits (727), Expect = 3.470e-95 Identity = 138/150 (92.00%), Postives = 145/150 (96.67%), Query Frame = 1
Query: 1 IDVVNIQKSGDQFRLLYDTKGHFVLHRISDEEAKFKLCRVNKVETSKNKIPFLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIETIKFEIGNVCMISRGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFVMGHGTRAMV 450
+DVV IQKSGD FRLLY+TKG FVLHRIS+EE+KFKLCRVNKVE SKNKIP+LVTHDGRTIRYPDPLIKVNDTIKVDLETGKAI+TIKFEIGNVCMI+RGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIF MGHGTRAMV
Sbjct: 87 MDVVQIQKSGDLFRLLYNTKGRFVLHRISEEESKFKLCRVNKVEMSKNKIPYLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIDTIKFEIGNVCMIARGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFTMGHGTRAMV 236
BLAST of mRNA_H-elongata_contig119931.1540.1 vs. uniprot
Match: A0A835ZEV0_9STRA (40S ribosomal protein S4 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEV0_9STRA) HSP 1 Score: 240 bits (613), Expect = 7.390e-78 Identity = 113/150 (75.33%), Postives = 130/150 (86.67%), Query Frame = 1
Query: 1 IDVVNIQKSGDQFRLLYDTKGHFVLHRISDEEAKFKLCRVNKVETSKNKIPFLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIETIKFEIGNVCMISRGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFVMGHGTRAMV 450
+DVV+I+KS DQFRLLY+TKG FVLHR+ DEEAK+KLCRV KVE SK KIPFLVTHDGRTIRYPDPL+KVND+IKVD+ETGK + K+EIGN+CMISRG N GRVG +QHIERHPGSFDIV+VKD AG+VFATR NIFV+G TR +
Sbjct: 86 MDVVSIEKSADQFRLLYNTKGRFVLHRVKDEEAKYKLCRVQKVEVSKKKIPFLVTHDGRTIRYPDPLVKVNDSIKVDVETGKMSDIYKYEIGNLCMISRGHNTGRVGTIQHIERHPGSFDIVTVKDSAGNVFATRQANIFVLGESTRPAI 235
BLAST of mRNA_H-elongata_contig119931.1540.1 vs. uniprot
Match: A0A7S2WPT4_9STRA (40S ribosomal protein S4 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPT4_9STRA) HSP 1 Score: 226 bits (575), Expect = 7.150e-72 Identity = 104/150 (69.33%), Postives = 125/150 (83.33%), Query Frame = 1
Query: 1 IDVVNIQKSGDQFRLLYDTKGHFVLHRISDEEAKFKLCRVNKVETSKNKIPFLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIETIKFEIGNVCMISRGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFVMGHGTRAMV 450
+DVV I++SGD FRLLYD KG FVLHR+ ++E FKLCRV KV+ S KIP++VTHDGRTIRYPDPLIK NDT+KVDL TGK I+ IKFEIG +CMI RGRNAGRVG++QH+E+HPGSFD+++VKD AG VFATRL NIFV+G + V
Sbjct: 103 MDVVQIERSGDLFRLLYDVKGRFVLHRVKEDEGSFKLCRVMKVDVSAKKIPYVVTHDGRTIRYPDPLIKANDTVKVDLATGKIIDHIKFEIGRLCMIQRGRNAGRVGVIQHVEKHPGSFDMITVKDAAGKVFATRLGNIFVIGDDKKPWV 252
BLAST of mRNA_H-elongata_contig119931.1540.1 vs. uniprot
Match: A0A7S2HY22_9STRA (40S ribosomal protein S4 n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HY22_9STRA) HSP 1 Score: 218 bits (555), Expect = 4.550e-69 Identity = 100/150 (66.67%), Postives = 125/150 (83.33%), Query Frame = 1
Query: 1 IDVVNIQKSGDQFRLLYDTKGHFVLHRISDEEAKFKLCRVNKVETSKNKIPFLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIETIKFEIGNVCMISRGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFVMGHGTRAMV 450
+DV+ ++KSGD+FRLL+DTKG FVLHRI+ EEA +KLCRVNKV S NKIP VTHDGRTIRYPDP +KVND++KVD+E+GK + +KFE+G++ MI+RGRNAGRVG + HIE+H GSFDIV+VKD GH F+TRLQN+FV+G G V
Sbjct: 87 MDVIELEKSGDRFRLLFDTKGRFVLHRINREEASYKLCRVNKVFVSANKIPVAVTHDGRTIRYPDPDVKVNDSVKVDIESGKMSDILKFELGSMVMITRGRNAGRVGTLMHIEKHEGSFDIVTVKDTKGHTFSTRLQNVFVIGSGNHPQV 236
BLAST of mRNA_H-elongata_contig119931.1540.1 vs. uniprot
Match: W7TUQ1_9STRA (40S ribosomal protein S4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUQ1_9STRA) HSP 1 Score: 218 bits (554), Expect = 6.260e-69 Identity = 99/152 (65.13%), Postives = 125/152 (82.24%), Query Frame = 1
Query: 1 IDVVNIQKSGDQFRLLYDTKGHFVLHRISD--EEAKFKLCRVNKVETSKNKIPFLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIETIKFEIGNVCMISRGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFVMGHGTRAMV 450
+DV+ I+KSGD+FRLLYD KG F L R+ + EE FKLCRVNK E S NKIP++VTHDGRTIRYPDPLIK++DT+KVD+ TGK ++ IKF++GN+ ++RG N GRVG++QHIERHPGSFDI++VKD GH FATR QN+FV+G G + MV
Sbjct: 87 MDVITIEKSGDEFRLLYDVKGRFYLQRLEEGSEERNFKLCRVNKNEMSANKIPYIVTHDGRTIRYPDPLIKMDDTVKVDIRTGKILDFIKFDLGNLVYLTRGHNTGRVGMIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGQGNKPMV 238
BLAST of mRNA_H-elongata_contig119931.1540.1 vs. uniprot
Match: A0A2D4CA31_PYTIN (40S ribosomal protein S4 n=3 Tax=Eukaryota TaxID=2759 RepID=A0A2D4CA31_PYTIN) HSP 1 Score: 216 bits (550), Expect = 2.780e-68 Identity = 99/150 (66.00%), Postives = 124/150 (82.67%), Query Frame = 1
Query: 1 IDVVNIQKSGDQFRLLYDTKGHFVLHRISDEEAKFKLCRVNKVETSKNKIPFLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIETIKFEIGNVCMISRGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFVMGHGTRAMV 450
+DV+ + KSGD FRLLYDTKG FVLHRI++EE K+KLC+V + E +K IP++ T+DGRTIRYPDPLIKVNDT+KVDLETGK ++ IKFE GN+ M++ GRNAGRVGI+ HIERH GSF+I +KD AGH FATRL N+FV+G+ +R V
Sbjct: 87 MDVIELPKSGDAFRLLYDTKGRFVLHRINNEEKKYKLCKVTRQEYTKKAIPYIATNDGRTIRYPDPLIKVNDTVKVDLETGKVVDFIKFETGNLVMVTGGRNAGRVGILHHIERHEGSFNIAHIKDSAGHAFATRLGNVFVIGNESRPSV 236
BLAST of mRNA_H-elongata_contig119931.1540.1 vs. uniprot
Match: A0A5D6XRP7_9STRA (40S ribosomal protein S4 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XRP7_9STRA) HSP 1 Score: 213 bits (543), Expect = 2.500e-67 Identity = 99/150 (66.00%), Postives = 123/150 (82.00%), Query Frame = 1
Query: 1 IDVVNIQKSGDQFRLLYDTKGHFVLHRISDEEAKFKLCRVNKVETSKNKIPFLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIETIKFEIGNVCMISRGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFVMGHGTRAMV 450
+DVV + KSGDQFRLLYDTKG FVLHR+S+EE K+KL +V + E +K IP++ T+DGRTIRYPDPLIKVNDT+K+DLETGK ++ +K E GN+ MI+RGRN GRVGI+ HIERH GSF+I VKD AGH FATRL N+FV+G +R +V
Sbjct: 81 MDVVELAKSGDQFRLLYDTKGRFVLHRVSNEEKKYKLAKVTRQEYTKKAIPYVATNDGRTIRYPDPLIKVNDTVKIDLETGKIVDFVKLEAGNMVMITRGRNTGRVGILHHIERHEGSFNIAHVKDSAGHDFATRLGNVFVIGSESRPLV 230
BLAST of mRNA_H-elongata_contig119931.1540.1 vs. uniprot
Match: A0A4D5R9X5_SCOVI (40S ribosomal protein S4 n=2 Tax=Scolopendridae TaxID=41363 RepID=A0A4D5R9X5_SCOVI) HSP 1 Score: 212 bits (539), Expect = 1.250e-66 Identity = 98/150 (65.33%), Postives = 120/150 (80.00%), Query Frame = 1
Query: 1 IDVVNIQKSGDQFRLLYDTKGHFVLHRISDEEAKFKLCRVNKVETSKNKIPFLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIETIKFEIGNVCMISRGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFVMGHGTRAMV 450
+DVV I+K+G+ FRLLYD KG F +HRI+ EEAK+KLC+V KV+ IPFLVTHDGRTIRYPDP IKVNDT++VD+ TGK + IKF+ GN+CMI+ GRN GRVG + + ERHPGSFDIV VKD GH FATRL NIF++G GT+A +
Sbjct: 87 MDVVTIEKTGEHFRLLYDVKGRFTVHRIAPEEAKYKLCKVKKVQVGPKGIPFLVTHDGRTIRYPDPHIKVNDTVQVDIATGKITDFIKFDSGNLCMITGGRNLGRVGTVTNRERHPGSFDIVHVKDAVGHSFATRLNNIFIIGKGTKAYI 236
BLAST of mRNA_H-elongata_contig119931.1540.1 vs. uniprot
Match: A0A7R9LKW0_9ACAR (Hypothetical protein (Fragment) n=1 Tax=Medioppia subpectinata TaxID=1979941 RepID=A0A7R9LKW0_9ACAR) HSP 1 Score: 207 bits (527), Expect = 5.400e-66 Identity = 97/150 (64.67%), Postives = 118/150 (78.67%), Query Frame = 1
Query: 1 IDVVNIQKSGDQFRLLYDTKGHFVLHRISDEEAKFKLCRVNKVETSKNKIPFLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIETIKFEIGNVCMISRGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFVMGHGTRAMV 450
+DVV I+K+GD FRLLYD KG F LH+I+ EEAK+KLCRV KV IPF+VTHDGRTIRYPDPLIKV+D+I++D+ TGK ++ IKFE GN+CM++ G N GRVGI+ ERHPGSFDIV VKD GH FATRL IFV+G GT+ +
Sbjct: 2 LDVVTIEKTGDFFRLLYDIKGRFSLHKITGEEAKYKLCRVKKVSVGPKGIPFIVTHDGRTIRYPDPLIKVHDSIRLDIATGKILDFIKFETGNLCMVTGGHNLGRVGIITSRERHPGSFDIVHVKDSQGHTFATRLAYIFVIGKGTKPFI 151
BLAST of mRNA_H-elongata_contig119931.1540.1 vs. uniprot
Match: A0A1W4WAS3_AGRPL (40S ribosomal protein S4 n=9 Tax=Neoptera TaxID=33340 RepID=A0A1W4WAS3_AGRPL) HSP 1 Score: 210 bits (534), Expect = 6.960e-66 Identity = 93/150 (62.00%), Postives = 123/150 (82.00%), Query Frame = 1
Query: 1 IDVVNIQKSGDQFRLLYDTKGHFVLHRISDEEAKFKLCRVNKVETSKNKIPFLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIETIKFEIGNVCMISRGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFVMGHGTRAMV 450
+DV+ I+K+G+ FRL+YD KG F +HRI+ EEAK+KLC+V KV+T +PFLVTHDGRTIRYPDP+IKVNDTI++++ T K ++ IKF+ GN+CMI+ GRN GRVG + + ERHPGSFDIV +KD GHVFATRL N+F++G G++A V
Sbjct: 87 MDVITIEKTGEYFRLIYDVKGRFTIHRITAEEAKYKLCKVRKVQTGPKGVPFLVTHDGRTIRYPDPIIKVNDTIQLEIATSKILDFIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDANGHVFATRLNNVFIIGKGSKAFV 236 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119931.1540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig119931.1540.1 >prot_H-elongata_contig119931.1540.1 ID=prot_H-elongata_contig119931.1540.1|Name=mRNA_H-elongata_contig119931.1540.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=150bp IDVVNIQKSGDQFRLLYDTKGHFVLHRISDEEAKFKLCRVNKVETSKNKIback to top mRNA from alignment at H-elongata_contig119931:233..1236- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig119931.1540.1 ID=mRNA_H-elongata_contig119931.1540.1|Name=mRNA_H-elongata_contig119931.1540.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1004bp|location=Sequence derived from alignment at H-elongata_contig119931:233..1236- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig119931:233..1236- >mRNA_H-elongata_contig119931.1540.1 ID=mRNA_H-elongata_contig119931.1540.1|Name=mRNA_H-elongata_contig119931.1540.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=900bp|location=Sequence derived from alignment at H-elongata_contig119931:233..1236- (Himanthalia elongata Himel1 dioecious)back to top |