prot_H-elongata_contig119931.1540.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig119931.1540.1
Unique Nameprot_H-elongata_contig119931.1540.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length150
Homology
BLAST of mRNA_H-elongata_contig119931.1540.1 vs. uniprot
Match: D7FLZ5_ECTSI (40S ribosomal protein S4 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLZ5_ECTSI)

HSP 1 Score: 284 bits (727), Expect = 3.470e-95
Identity = 138/150 (92.00%), Postives = 145/150 (96.67%), Query Frame = 0
Query:    1 IDVVNIQKSGDQFRLLYDTKGHFVLHRISDEEAKFKLCRVNKVETSKNKIPFLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIETIKFEIGNVCMISRGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFVMGHGTRAMV 150
            +DVV IQKSGD FRLLY+TKG FVLHRIS+EE+KFKLCRVNKVE SKNKIP+LVTHDGRTIRYPDPLIKVNDTIKVDLETGKAI+TIKFEIGNVCMI+RGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIF MGHGTRAMV
Sbjct:   87 MDVVQIQKSGDLFRLLYNTKGRFVLHRISEEESKFKLCRVNKVEMSKNKIPYLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIDTIKFEIGNVCMIARGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFTMGHGTRAMV 236          
BLAST of mRNA_H-elongata_contig119931.1540.1 vs. uniprot
Match: A0A835ZEV0_9STRA (40S ribosomal protein S4 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEV0_9STRA)

HSP 1 Score: 240 bits (613), Expect = 7.390e-78
Identity = 113/150 (75.33%), Postives = 130/150 (86.67%), Query Frame = 0
Query:    1 IDVVNIQKSGDQFRLLYDTKGHFVLHRISDEEAKFKLCRVNKVETSKNKIPFLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIETIKFEIGNVCMISRGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFVMGHGTRAMV 150
            +DVV+I+KS DQFRLLY+TKG FVLHR+ DEEAK+KLCRV KVE SK KIPFLVTHDGRTIRYPDPL+KVND+IKVD+ETGK  +  K+EIGN+CMISRG N GRVG +QHIERHPGSFDIV+VKD AG+VFATR  NIFV+G  TR  +
Sbjct:   86 MDVVSIEKSADQFRLLYNTKGRFVLHRVKDEEAKYKLCRVQKVEVSKKKIPFLVTHDGRTIRYPDPLVKVNDSIKVDVETGKMSDIYKYEIGNLCMISRGHNTGRVGTIQHIERHPGSFDIVTVKDSAGNVFATRQANIFVLGESTRPAI 235          
BLAST of mRNA_H-elongata_contig119931.1540.1 vs. uniprot
Match: A0A7S2WPT4_9STRA (40S ribosomal protein S4 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPT4_9STRA)

HSP 1 Score: 226 bits (575), Expect = 7.150e-72
Identity = 104/150 (69.33%), Postives = 125/150 (83.33%), Query Frame = 0
Query:    1 IDVVNIQKSGDQFRLLYDTKGHFVLHRISDEEAKFKLCRVNKVETSKNKIPFLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIETIKFEIGNVCMISRGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFVMGHGTRAMV 150
            +DVV I++SGD FRLLYD KG FVLHR+ ++E  FKLCRV KV+ S  KIP++VTHDGRTIRYPDPLIK NDT+KVDL TGK I+ IKFEIG +CMI RGRNAGRVG++QH+E+HPGSFD+++VKD AG VFATRL NIFV+G   +  V
Sbjct:  103 MDVVQIERSGDLFRLLYDVKGRFVLHRVKEDEGSFKLCRVMKVDVSAKKIPYVVTHDGRTIRYPDPLIKANDTVKVDLATGKIIDHIKFEIGRLCMIQRGRNAGRVGVIQHVEKHPGSFDMITVKDAAGKVFATRLGNIFVIGDDKKPWV 252          
BLAST of mRNA_H-elongata_contig119931.1540.1 vs. uniprot
Match: A0A7S2HY22_9STRA (40S ribosomal protein S4 n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HY22_9STRA)

HSP 1 Score: 218 bits (555), Expect = 4.550e-69
Identity = 100/150 (66.67%), Postives = 125/150 (83.33%), Query Frame = 0
Query:    1 IDVVNIQKSGDQFRLLYDTKGHFVLHRISDEEAKFKLCRVNKVETSKNKIPFLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIETIKFEIGNVCMISRGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFVMGHGTRAMV 150
            +DV+ ++KSGD+FRLL+DTKG FVLHRI+ EEA +KLCRVNKV  S NKIP  VTHDGRTIRYPDP +KVND++KVD+E+GK  + +KFE+G++ MI+RGRNAGRVG + HIE+H GSFDIV+VKD  GH F+TRLQN+FV+G G    V
Sbjct:   87 MDVIELEKSGDRFRLLFDTKGRFVLHRINREEASYKLCRVNKVFVSANKIPVAVTHDGRTIRYPDPDVKVNDSVKVDIESGKMSDILKFELGSMVMITRGRNAGRVGTLMHIEKHEGSFDIVTVKDTKGHTFSTRLQNVFVIGSGNHPQV 236          
BLAST of mRNA_H-elongata_contig119931.1540.1 vs. uniprot
Match: W7TUQ1_9STRA (40S ribosomal protein S4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUQ1_9STRA)

HSP 1 Score: 218 bits (554), Expect = 6.260e-69
Identity = 99/152 (65.13%), Postives = 125/152 (82.24%), Query Frame = 0
Query:    1 IDVVNIQKSGDQFRLLYDTKGHFVLHRISD--EEAKFKLCRVNKVETSKNKIPFLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIETIKFEIGNVCMISRGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFVMGHGTRAMV 150
            +DV+ I+KSGD+FRLLYD KG F L R+ +  EE  FKLCRVNK E S NKIP++VTHDGRTIRYPDPLIK++DT+KVD+ TGK ++ IKF++GN+  ++RG N GRVG++QHIERHPGSFDI++VKD  GH FATR QN+FV+G G + MV
Sbjct:   87 MDVITIEKSGDEFRLLYDVKGRFYLQRLEEGSEERNFKLCRVNKNEMSANKIPYIVTHDGRTIRYPDPLIKMDDTVKVDIRTGKILDFIKFDLGNLVYLTRGHNTGRVGMIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGQGNKPMV 238          
BLAST of mRNA_H-elongata_contig119931.1540.1 vs. uniprot
Match: A0A2D4CA31_PYTIN (40S ribosomal protein S4 n=3 Tax=Eukaryota TaxID=2759 RepID=A0A2D4CA31_PYTIN)

HSP 1 Score: 216 bits (550), Expect = 2.780e-68
Identity = 99/150 (66.00%), Postives = 124/150 (82.67%), Query Frame = 0
Query:    1 IDVVNIQKSGDQFRLLYDTKGHFVLHRISDEEAKFKLCRVNKVETSKNKIPFLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIETIKFEIGNVCMISRGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFVMGHGTRAMV 150
            +DV+ + KSGD FRLLYDTKG FVLHRI++EE K+KLC+V + E +K  IP++ T+DGRTIRYPDPLIKVNDT+KVDLETGK ++ IKFE GN+ M++ GRNAGRVGI+ HIERH GSF+I  +KD AGH FATRL N+FV+G+ +R  V
Sbjct:   87 MDVIELPKSGDAFRLLYDTKGRFVLHRINNEEKKYKLCKVTRQEYTKKAIPYIATNDGRTIRYPDPLIKVNDTVKVDLETGKVVDFIKFETGNLVMVTGGRNAGRVGILHHIERHEGSFNIAHIKDSAGHAFATRLGNVFVIGNESRPSV 236          
BLAST of mRNA_H-elongata_contig119931.1540.1 vs. uniprot
Match: A0A5D6XRP7_9STRA (40S ribosomal protein S4 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XRP7_9STRA)

HSP 1 Score: 213 bits (543), Expect = 2.500e-67
Identity = 99/150 (66.00%), Postives = 123/150 (82.00%), Query Frame = 0
Query:    1 IDVVNIQKSGDQFRLLYDTKGHFVLHRISDEEAKFKLCRVNKVETSKNKIPFLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIETIKFEIGNVCMISRGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFVMGHGTRAMV 150
            +DVV + KSGDQFRLLYDTKG FVLHR+S+EE K+KL +V + E +K  IP++ T+DGRTIRYPDPLIKVNDT+K+DLETGK ++ +K E GN+ MI+RGRN GRVGI+ HIERH GSF+I  VKD AGH FATRL N+FV+G  +R +V
Sbjct:   81 MDVVELAKSGDQFRLLYDTKGRFVLHRVSNEEKKYKLAKVTRQEYTKKAIPYVATNDGRTIRYPDPLIKVNDTVKIDLETGKIVDFVKLEAGNMVMITRGRNTGRVGILHHIERHEGSFNIAHVKDSAGHDFATRLGNVFVIGSESRPLV 230          
BLAST of mRNA_H-elongata_contig119931.1540.1 vs. uniprot
Match: A0A4D5R9X5_SCOVI (40S ribosomal protein S4 n=2 Tax=Scolopendridae TaxID=41363 RepID=A0A4D5R9X5_SCOVI)

HSP 1 Score: 212 bits (539), Expect = 1.250e-66
Identity = 98/150 (65.33%), Postives = 120/150 (80.00%), Query Frame = 0
Query:    1 IDVVNIQKSGDQFRLLYDTKGHFVLHRISDEEAKFKLCRVNKVETSKNKIPFLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIETIKFEIGNVCMISRGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFVMGHGTRAMV 150
            +DVV I+K+G+ FRLLYD KG F +HRI+ EEAK+KLC+V KV+     IPFLVTHDGRTIRYPDP IKVNDT++VD+ TGK  + IKF+ GN+CMI+ GRN GRVG + + ERHPGSFDIV VKD  GH FATRL NIF++G GT+A +
Sbjct:   87 MDVVTIEKTGEHFRLLYDVKGRFTVHRIAPEEAKYKLCKVKKVQVGPKGIPFLVTHDGRTIRYPDPHIKVNDTVQVDIATGKITDFIKFDSGNLCMITGGRNLGRVGTVTNRERHPGSFDIVHVKDAVGHSFATRLNNIFIIGKGTKAYI 236          
BLAST of mRNA_H-elongata_contig119931.1540.1 vs. uniprot
Match: A0A7R9LKW0_9ACAR (Hypothetical protein (Fragment) n=1 Tax=Medioppia subpectinata TaxID=1979941 RepID=A0A7R9LKW0_9ACAR)

HSP 1 Score: 207 bits (527), Expect = 5.400e-66
Identity = 97/150 (64.67%), Postives = 118/150 (78.67%), Query Frame = 0
Query:    1 IDVVNIQKSGDQFRLLYDTKGHFVLHRISDEEAKFKLCRVNKVETSKNKIPFLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIETIKFEIGNVCMISRGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFVMGHGTRAMV 150
            +DVV I+K+GD FRLLYD KG F LH+I+ EEAK+KLCRV KV      IPF+VTHDGRTIRYPDPLIKV+D+I++D+ TGK ++ IKFE GN+CM++ G N GRVGI+   ERHPGSFDIV VKD  GH FATRL  IFV+G GT+  +
Sbjct:    2 LDVVTIEKTGDFFRLLYDIKGRFSLHKITGEEAKYKLCRVKKVSVGPKGIPFIVTHDGRTIRYPDPLIKVHDSIRLDIATGKILDFIKFETGNLCMVTGGHNLGRVGIITSRERHPGSFDIVHVKDSQGHTFATRLAYIFVIGKGTKPFI 151          
BLAST of mRNA_H-elongata_contig119931.1540.1 vs. uniprot
Match: A0A1W4WAS3_AGRPL (40S ribosomal protein S4 n=9 Tax=Neoptera TaxID=33340 RepID=A0A1W4WAS3_AGRPL)

HSP 1 Score: 210 bits (534), Expect = 6.960e-66
Identity = 93/150 (62.00%), Postives = 123/150 (82.00%), Query Frame = 0
Query:    1 IDVVNIQKSGDQFRLLYDTKGHFVLHRISDEEAKFKLCRVNKVETSKNKIPFLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIETIKFEIGNVCMISRGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFVMGHGTRAMV 150
            +DV+ I+K+G+ FRL+YD KG F +HRI+ EEAK+KLC+V KV+T    +PFLVTHDGRTIRYPDP+IKVNDTI++++ T K ++ IKF+ GN+CMI+ GRN GRVG + + ERHPGSFDIV +KD  GHVFATRL N+F++G G++A V
Sbjct:   87 MDVITIEKTGEYFRLIYDVKGRFTIHRITAEEAKYKLCKVRKVQTGPKGVPFLVTHDGRTIRYPDPIIKVNDTIQLEIATSKILDFIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDANGHVFATRLNNVFIIGKGSKAFV 236          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119931.1540.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLZ5_ECTSI3.470e-9592.0040S ribosomal protein S4 n=2 Tax=Ectocarpus TaxID=... [more]
A0A835ZEV0_9STRA7.390e-7875.3340S ribosomal protein S4 n=2 Tax=Tribonema minus T... [more]
A0A7S2WPT4_9STRA7.150e-7269.3340S ribosomal protein S4 n=1 Tax=Rhizochromulina m... [more]
A0A7S2HY22_9STRA4.550e-6966.6740S ribosomal protein S4 n=1 Tax=Helicotheca tames... [more]
W7TUQ1_9STRA6.260e-6965.1340S ribosomal protein S4 n=2 Tax=Monodopsidaceae T... [more]
A0A2D4CA31_PYTIN2.780e-6866.0040S ribosomal protein S4 n=3 Tax=Eukaryota TaxID=2... [more]
A0A5D6XRP7_9STRA2.500e-6766.0040S ribosomal protein S4 n=1 Tax=Pythium brassicum... [more]
A0A4D5R9X5_SCOVI1.250e-6665.3340S ribosomal protein S4 n=2 Tax=Scolopendridae Ta... [more]
A0A7R9LKW0_9ACAR5.400e-6664.67Hypothetical protein (Fragment) n=1 Tax=Medioppia ... [more]
A0A1W4WAS3_AGRPL6.960e-6662.0040S ribosomal protein S4 n=9 Tax=Neoptera TaxID=33... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005824KOWSMARTSM00739kow_9coord: 88..115
e-value: 0.0026
score: 27.0
IPR013845Ribosomal protein S4e, central regionPFAMPF00900Ribosomal_S4ecoord: 10..82
e-value: 4.4E-35
score: 119.4
IPR014722Ribosomal protein L2, domain 2GENE3D2.30.30.30coord: 89..150
e-value: 2.1E-24
score: 87.1
IPR03227740S ribosomal protein S4, C-terminal domainPFAMPF1612140S_S4_Ccoord: 126..150
e-value: 2.0E-8
score: 33.7
NoneNo IPR availableGENE3D3.10.290.40coord: 1..31
e-value: 3.3E-7
score: 32.2
NoneNo IPR availablePRODOMPD002667coord: 1..95
e-value: 7.0E-33
score: 347.0
IPR038237Ribosomal protein S4e, central domain superfamilyGENE3D2.40.50.740coord: 36..86
e-value: 7.1E-28
score: 97.9
IPR000876Ribosomal protein S4ePANTHERPTHR1158130S/40S RIBOSOMAL PROTEIN S4coord: 2..148

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119931contigH-elongata_contig119931:233..1236 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119931.1540.1mRNA_H-elongata_contig119931.1540.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig119931 233..1236 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig119931.1540.1 ID=prot_H-elongata_contig119931.1540.1|Name=mRNA_H-elongata_contig119931.1540.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=150bp
IDVVNIQKSGDQFRLLYDTKGHFVLHRISDEEAKFKLCRVNKVETSKNKI
PFLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIETIKFEIGNVCMISRG
RNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFVMGHGTRAMV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005824KOW
IPR013845Ribosomal_S4e_central_region
IPR014722Rib_L2_dom2
IPR03227740S_S4_C
IPR038237Ribosomal_S4e_central_sf
IPR000876Ribosomal_S4e