mRNA_H-elongata_contig119931.1540.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119931.1540.1
Unique NamemRNA_H-elongata_contig119931.1540.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig119931.1540.1 vs. uniprot
Match: D7FLZ5_ECTSI (40S ribosomal protein S4 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLZ5_ECTSI)

HSP 1 Score: 284 bits (727), Expect = 3.470e-95
Identity = 138/150 (92.00%), Postives = 145/150 (96.67%), Query Frame = 1
Query:    1 IDVVNIQKSGDQFRLLYDTKGHFVLHRISDEEAKFKLCRVNKVETSKNKIPFLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIETIKFEIGNVCMISRGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFVMGHGTRAMV 450
            +DVV IQKSGD FRLLY+TKG FVLHRIS+EE+KFKLCRVNKVE SKNKIP+LVTHDGRTIRYPDPLIKVNDTIKVDLETGKAI+TIKFEIGNVCMI+RGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIF MGHGTRAMV
Sbjct:   87 MDVVQIQKSGDLFRLLYNTKGRFVLHRISEEESKFKLCRVNKVEMSKNKIPYLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIDTIKFEIGNVCMIARGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFTMGHGTRAMV 236          
BLAST of mRNA_H-elongata_contig119931.1540.1 vs. uniprot
Match: A0A835ZEV0_9STRA (40S ribosomal protein S4 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEV0_9STRA)

HSP 1 Score: 240 bits (613), Expect = 7.390e-78
Identity = 113/150 (75.33%), Postives = 130/150 (86.67%), Query Frame = 1
Query:    1 IDVVNIQKSGDQFRLLYDTKGHFVLHRISDEEAKFKLCRVNKVETSKNKIPFLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIETIKFEIGNVCMISRGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFVMGHGTRAMV 450
            +DVV+I+KS DQFRLLY+TKG FVLHR+ DEEAK+KLCRV KVE SK KIPFLVTHDGRTIRYPDPL+KVND+IKVD+ETGK  +  K+EIGN+CMISRG N GRVG +QHIERHPGSFDIV+VKD AG+VFATR  NIFV+G  TR  +
Sbjct:   86 MDVVSIEKSADQFRLLYNTKGRFVLHRVKDEEAKYKLCRVQKVEVSKKKIPFLVTHDGRTIRYPDPLVKVNDSIKVDVETGKMSDIYKYEIGNLCMISRGHNTGRVGTIQHIERHPGSFDIVTVKDSAGNVFATRQANIFVLGESTRPAI 235          
BLAST of mRNA_H-elongata_contig119931.1540.1 vs. uniprot
Match: A0A7S2WPT4_9STRA (40S ribosomal protein S4 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPT4_9STRA)

HSP 1 Score: 226 bits (575), Expect = 7.150e-72
Identity = 104/150 (69.33%), Postives = 125/150 (83.33%), Query Frame = 1
Query:    1 IDVVNIQKSGDQFRLLYDTKGHFVLHRISDEEAKFKLCRVNKVETSKNKIPFLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIETIKFEIGNVCMISRGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFVMGHGTRAMV 450
            +DVV I++SGD FRLLYD KG FVLHR+ ++E  FKLCRV KV+ S  KIP++VTHDGRTIRYPDPLIK NDT+KVDL TGK I+ IKFEIG +CMI RGRNAGRVG++QH+E+HPGSFD+++VKD AG VFATRL NIFV+G   +  V
Sbjct:  103 MDVVQIERSGDLFRLLYDVKGRFVLHRVKEDEGSFKLCRVMKVDVSAKKIPYVVTHDGRTIRYPDPLIKANDTVKVDLATGKIIDHIKFEIGRLCMIQRGRNAGRVGVIQHVEKHPGSFDMITVKDAAGKVFATRLGNIFVIGDDKKPWV 252          
BLAST of mRNA_H-elongata_contig119931.1540.1 vs. uniprot
Match: A0A7S2HY22_9STRA (40S ribosomal protein S4 n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HY22_9STRA)

HSP 1 Score: 218 bits (555), Expect = 4.550e-69
Identity = 100/150 (66.67%), Postives = 125/150 (83.33%), Query Frame = 1
Query:    1 IDVVNIQKSGDQFRLLYDTKGHFVLHRISDEEAKFKLCRVNKVETSKNKIPFLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIETIKFEIGNVCMISRGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFVMGHGTRAMV 450
            +DV+ ++KSGD+FRLL+DTKG FVLHRI+ EEA +KLCRVNKV  S NKIP  VTHDGRTIRYPDP +KVND++KVD+E+GK  + +KFE+G++ MI+RGRNAGRVG + HIE+H GSFDIV+VKD  GH F+TRLQN+FV+G G    V
Sbjct:   87 MDVIELEKSGDRFRLLFDTKGRFVLHRINREEASYKLCRVNKVFVSANKIPVAVTHDGRTIRYPDPDVKVNDSVKVDIESGKMSDILKFELGSMVMITRGRNAGRVGTLMHIEKHEGSFDIVTVKDTKGHTFSTRLQNVFVIGSGNHPQV 236          
BLAST of mRNA_H-elongata_contig119931.1540.1 vs. uniprot
Match: W7TUQ1_9STRA (40S ribosomal protein S4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUQ1_9STRA)

HSP 1 Score: 218 bits (554), Expect = 6.260e-69
Identity = 99/152 (65.13%), Postives = 125/152 (82.24%), Query Frame = 1
Query:    1 IDVVNIQKSGDQFRLLYDTKGHFVLHRISD--EEAKFKLCRVNKVETSKNKIPFLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIETIKFEIGNVCMISRGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFVMGHGTRAMV 450
            +DV+ I+KSGD+FRLLYD KG F L R+ +  EE  FKLCRVNK E S NKIP++VTHDGRTIRYPDPLIK++DT+KVD+ TGK ++ IKF++GN+  ++RG N GRVG++QHIERHPGSFDI++VKD  GH FATR QN+FV+G G + MV
Sbjct:   87 MDVITIEKSGDEFRLLYDVKGRFYLQRLEEGSEERNFKLCRVNKNEMSANKIPYIVTHDGRTIRYPDPLIKMDDTVKVDIRTGKILDFIKFDLGNLVYLTRGHNTGRVGMIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGQGNKPMV 238          
BLAST of mRNA_H-elongata_contig119931.1540.1 vs. uniprot
Match: A0A2D4CA31_PYTIN (40S ribosomal protein S4 n=3 Tax=Eukaryota TaxID=2759 RepID=A0A2D4CA31_PYTIN)

HSP 1 Score: 216 bits (550), Expect = 2.780e-68
Identity = 99/150 (66.00%), Postives = 124/150 (82.67%), Query Frame = 1
Query:    1 IDVVNIQKSGDQFRLLYDTKGHFVLHRISDEEAKFKLCRVNKVETSKNKIPFLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIETIKFEIGNVCMISRGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFVMGHGTRAMV 450
            +DV+ + KSGD FRLLYDTKG FVLHRI++EE K+KLC+V + E +K  IP++ T+DGRTIRYPDPLIKVNDT+KVDLETGK ++ IKFE GN+ M++ GRNAGRVGI+ HIERH GSF+I  +KD AGH FATRL N+FV+G+ +R  V
Sbjct:   87 MDVIELPKSGDAFRLLYDTKGRFVLHRINNEEKKYKLCKVTRQEYTKKAIPYIATNDGRTIRYPDPLIKVNDTVKVDLETGKVVDFIKFETGNLVMVTGGRNAGRVGILHHIERHEGSFNIAHIKDSAGHAFATRLGNVFVIGNESRPSV 236          
BLAST of mRNA_H-elongata_contig119931.1540.1 vs. uniprot
Match: A0A5D6XRP7_9STRA (40S ribosomal protein S4 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XRP7_9STRA)

HSP 1 Score: 213 bits (543), Expect = 2.500e-67
Identity = 99/150 (66.00%), Postives = 123/150 (82.00%), Query Frame = 1
Query:    1 IDVVNIQKSGDQFRLLYDTKGHFVLHRISDEEAKFKLCRVNKVETSKNKIPFLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIETIKFEIGNVCMISRGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFVMGHGTRAMV 450
            +DVV + KSGDQFRLLYDTKG FVLHR+S+EE K+KL +V + E +K  IP++ T+DGRTIRYPDPLIKVNDT+K+DLETGK ++ +K E GN+ MI+RGRN GRVGI+ HIERH GSF+I  VKD AGH FATRL N+FV+G  +R +V
Sbjct:   81 MDVVELAKSGDQFRLLYDTKGRFVLHRVSNEEKKYKLAKVTRQEYTKKAIPYVATNDGRTIRYPDPLIKVNDTVKIDLETGKIVDFVKLEAGNMVMITRGRNTGRVGILHHIERHEGSFNIAHVKDSAGHDFATRLGNVFVIGSESRPLV 230          
BLAST of mRNA_H-elongata_contig119931.1540.1 vs. uniprot
Match: A0A4D5R9X5_SCOVI (40S ribosomal protein S4 n=2 Tax=Scolopendridae TaxID=41363 RepID=A0A4D5R9X5_SCOVI)

HSP 1 Score: 212 bits (539), Expect = 1.250e-66
Identity = 98/150 (65.33%), Postives = 120/150 (80.00%), Query Frame = 1
Query:    1 IDVVNIQKSGDQFRLLYDTKGHFVLHRISDEEAKFKLCRVNKVETSKNKIPFLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIETIKFEIGNVCMISRGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFVMGHGTRAMV 450
            +DVV I+K+G+ FRLLYD KG F +HRI+ EEAK+KLC+V KV+     IPFLVTHDGRTIRYPDP IKVNDT++VD+ TGK  + IKF+ GN+CMI+ GRN GRVG + + ERHPGSFDIV VKD  GH FATRL NIF++G GT+A +
Sbjct:   87 MDVVTIEKTGEHFRLLYDVKGRFTVHRIAPEEAKYKLCKVKKVQVGPKGIPFLVTHDGRTIRYPDPHIKVNDTVQVDIATGKITDFIKFDSGNLCMITGGRNLGRVGTVTNRERHPGSFDIVHVKDAVGHSFATRLNNIFIIGKGTKAYI 236          
BLAST of mRNA_H-elongata_contig119931.1540.1 vs. uniprot
Match: A0A7R9LKW0_9ACAR (Hypothetical protein (Fragment) n=1 Tax=Medioppia subpectinata TaxID=1979941 RepID=A0A7R9LKW0_9ACAR)

HSP 1 Score: 207 bits (527), Expect = 5.400e-66
Identity = 97/150 (64.67%), Postives = 118/150 (78.67%), Query Frame = 1
Query:    1 IDVVNIQKSGDQFRLLYDTKGHFVLHRISDEEAKFKLCRVNKVETSKNKIPFLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIETIKFEIGNVCMISRGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFVMGHGTRAMV 450
            +DVV I+K+GD FRLLYD KG F LH+I+ EEAK+KLCRV KV      IPF+VTHDGRTIRYPDPLIKV+D+I++D+ TGK ++ IKFE GN+CM++ G N GRVGI+   ERHPGSFDIV VKD  GH FATRL  IFV+G GT+  +
Sbjct:    2 LDVVTIEKTGDFFRLLYDIKGRFSLHKITGEEAKYKLCRVKKVSVGPKGIPFIVTHDGRTIRYPDPLIKVHDSIRLDIATGKILDFIKFETGNLCMVTGGHNLGRVGIITSRERHPGSFDIVHVKDSQGHTFATRLAYIFVIGKGTKPFI 151          
BLAST of mRNA_H-elongata_contig119931.1540.1 vs. uniprot
Match: A0A1W4WAS3_AGRPL (40S ribosomal protein S4 n=9 Tax=Neoptera TaxID=33340 RepID=A0A1W4WAS3_AGRPL)

HSP 1 Score: 210 bits (534), Expect = 6.960e-66
Identity = 93/150 (62.00%), Postives = 123/150 (82.00%), Query Frame = 1
Query:    1 IDVVNIQKSGDQFRLLYDTKGHFVLHRISDEEAKFKLCRVNKVETSKNKIPFLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIETIKFEIGNVCMISRGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFVMGHGTRAMV 450
            +DV+ I+K+G+ FRL+YD KG F +HRI+ EEAK+KLC+V KV+T    +PFLVTHDGRTIRYPDP+IKVNDTI++++ T K ++ IKF+ GN+CMI+ GRN GRVG + + ERHPGSFDIV +KD  GHVFATRL N+F++G G++A V
Sbjct:   87 MDVITIEKTGEYFRLIYDVKGRFTIHRITAEEAKYKLCKVRKVQTGPKGVPFLVTHDGRTIRYPDPIIKVNDTIQLEIATSKILDFIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDANGHVFATRLNNVFIIGKGSKAFV 236          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119931.1540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLZ5_ECTSI3.470e-9592.0040S ribosomal protein S4 n=2 Tax=Ectocarpus TaxID=... [more]
A0A835ZEV0_9STRA7.390e-7875.3340S ribosomal protein S4 n=2 Tax=Tribonema minus T... [more]
A0A7S2WPT4_9STRA7.150e-7269.3340S ribosomal protein S4 n=1 Tax=Rhizochromulina m... [more]
A0A7S2HY22_9STRA4.550e-6966.6740S ribosomal protein S4 n=1 Tax=Helicotheca tames... [more]
W7TUQ1_9STRA6.260e-6965.1340S ribosomal protein S4 n=2 Tax=Monodopsidaceae T... [more]
A0A2D4CA31_PYTIN2.780e-6866.0040S ribosomal protein S4 n=3 Tax=Eukaryota TaxID=2... [more]
A0A5D6XRP7_9STRA2.500e-6766.0040S ribosomal protein S4 n=1 Tax=Pythium brassicum... [more]
A0A4D5R9X5_SCOVI1.250e-6665.3340S ribosomal protein S4 n=2 Tax=Scolopendridae Ta... [more]
A0A7R9LKW0_9ACAR5.400e-6664.67Hypothetical protein (Fragment) n=1 Tax=Medioppia ... [more]
A0A1W4WAS3_AGRPL6.960e-6662.0040S ribosomal protein S4 n=9 Tax=Neoptera TaxID=33... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119931contigH-elongata_contig119931:233..1236 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score286.6
Seed ortholog evalue6.8e-75
Seed eggNOG ortholog2880.D7FLZ5
Preferred nameRPS4X
KEGG koko:K02987,ko:K22377
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0000184,GO:0000822,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005856,GO:0005886,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007010,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008284,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009636,GO:0009790,GO:0009792,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0022626,GO:0022627,GO:0030029,GO:0030036,GO:0030684,GO:0030686,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034248,GO:0034250,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0035770,GO:0036094,GO:0036464,GO:0042127,GO:0042221,GO:0042493,GO:0042886,GO:0043009,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043178,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045471,GO:0045727,GO:0046483,GO:0046677,GO:0046700,GO:0046907,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051641,GO:0051649,GO:0060255,GO:0060322,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0097305,GO:0098588,GO:0098805,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901700,GO:1990904,GO:2000112
EggNOG free text desc.rRNA binding
EggNOG OGsCOG1471@1,KOG0378@2759
EC2.3.2.27
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog description40S ribosomal protein S4
Ec32 orthologEc-22_000290.1
Exons4
Model size450
Cds size450
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119931.1540.1prot_H-elongata_contig119931.1540.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119931 233..1236 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929702.881769-CDS-H-elongata_contig119931:232..3411622929702.881769-CDS-H-elongata_contig119931:232..341Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119931 233..341 -
1691679125.0528145-CDS-H-elongata_contig119931:232..3411691679125.0528145-CDS-H-elongata_contig119931:232..341Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119931 233..341 -
1622929702.896832-CDS-H-elongata_contig119931:536..6701622929702.896832-CDS-H-elongata_contig119931:536..670Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119931 537..670 -
1691679125.0664582-CDS-H-elongata_contig119931:536..6701691679125.0664582-CDS-H-elongata_contig119931:536..670Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119931 537..670 -
1622929702.9146032-CDS-H-elongata_contig119931:869..9501622929702.9146032-CDS-H-elongata_contig119931:869..950Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119931 870..950 -
1691679125.0798573-CDS-H-elongata_contig119931:869..9501691679125.0798573-CDS-H-elongata_contig119931:869..950Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119931 870..950 -
1622929702.9330273-CDS-H-elongata_contig119931:1110..12361622929702.9330273-CDS-H-elongata_contig119931:1110..1236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119931 1111..1236 -
1691679125.0900097-CDS-H-elongata_contig119931:1110..12361691679125.0900097-CDS-H-elongata_contig119931:1110..1236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119931 1111..1236 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119931.1540.1

>prot_H-elongata_contig119931.1540.1 ID=prot_H-elongata_contig119931.1540.1|Name=mRNA_H-elongata_contig119931.1540.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=150bp
IDVVNIQKSGDQFRLLYDTKGHFVLHRISDEEAKFKLCRVNKVETSKNKI
PFLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIETIKFEIGNVCMISRG
RNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFVMGHGTRAMV
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mRNA from alignment at H-elongata_contig119931:233..1236-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119931.1540.1 ID=mRNA_H-elongata_contig119931.1540.1|Name=mRNA_H-elongata_contig119931.1540.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1004bp|location=Sequence derived from alignment at H-elongata_contig119931:233..1236- (Himanthalia elongata Himel1 dioecious)
ATAGACGTGGTCAACATCCAAAAGTCTGGTGACCAGTTTCGACTCTTGTA CGACACAAAGGGACACTTCGTGCTTCATCGCATCTCAGACGAAGAGGCCA AGTTTAAGCTCTGCCGCGTAAACAAGGTAAACTAAGCATTGAAATTGAAA ATCGTATGCGTGAATCTCCCAGAAAATAAAAACTAGTAATTAAAAAGAAA TTACAACTTGAAGGAGAGAAGTTACCCTCTTTTTCCCTATCACTTACTCA CATCGTCCCTTGTTTTTTGTTTGTTTTAATCTGAAGGTGGAGACTTCAAA GAACAAGATCCCATTTCTCGTGACGCACGACGGTCGTACCATTCGCTACC CTGATCCTCTGATCAAGGTAAAAATTTTTGTTTTCAAGTGAATCGAAAGA AAGTCTTCTATAACGCAAACGGAGTGAAAGGTTTTATAACGGACGCCCGT TTTCTTTTTTTAGACTCATCTATTTTTTGTCGCCTTCTCCTTAGCACACC AGCATGCGAGAAAGCTTGTGTATTGGTGACTATTTCCACCGTTTTGCAAA TTATTTTTTTCTACAGGTAAACGATACCATCAAAGTGGACCTGGAGACCG GCAAGGCCATCGAGACCATCAAGTTCGAGATTGGTAATGTGTGCATGATC TCCCGGGGGCGTAACGCGGGTCGCGTGGGCATCATGCAGCACATCGAGAG GTGCTTGTCGAGATTTCTTACGCACACCGAGGGTAATGTGTTTACAACCA TTTATGCCCGTCTTGTGTACTGCTCAAAAAAGTTATTACGCTTACATTTT CTATTTAACGTTTCATTGAGTGAAAAAAATAAGATTTGAAGGTTTTAACA CAGCCAAACGCCTTTTAAAAATTTACCGTTTTTTTTGTGATAAAGGCACC CAGGTTCGTTCGACATCGTATCGGTGAAGGATGGCGCCGGGCATGTCTTT GCCACCCGCCTTCAGAATATATTTGTGATGGGCCACGGAACTCGCGCCAT GGTA
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Coding sequence (CDS) from alignment at H-elongata_contig119931:233..1236-

>mRNA_H-elongata_contig119931.1540.1 ID=mRNA_H-elongata_contig119931.1540.1|Name=mRNA_H-elongata_contig119931.1540.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=900bp|location=Sequence derived from alignment at H-elongata_contig119931:233..1236- (Himanthalia elongata Himel1 dioecious)
ATAGACGTGGTCAACATCCAAAAGTCTGGTGACCAGTTTCGACTCTTGTA
CGACACAAAGGGACACTTCGTGCTTCATCGCATCTCAGACGAAGAGGCCA
AGTTTAAGCTCTGCCGCGTAAACAAGATAGACGTGGTCAACATCCAAAAG
TCTGGTGACCAGTTTCGACTCTTGTACGACACAAAGGGACACTTCGTGCT
TCATCGCATCTCAGACGAAGAGGCCAAGTTTAAGCTCTGCCGCGTAAACA
AGGTGGAGACTTCAAAGAACAAGATCCCATTTCTCGTGACGCACGACGGT
CGTACCATTCGCTACCCTGATCCTCTGATCAAGGTGGAGACTTCAAAGAA
CAAGATCCCATTTCTCGTGACGCACGACGGTCGTACCATTCGCTACCCTG
ATCCTCTGATCAAGGTAAACGATACCATCAAAGTGGACCTGGAGACCGGC
AAGGCCATCGAGACCATCAAGTTCGAGATTGGTAATGTGTGCATGATCTC
CCGGGGGCGTAACGCGGGTCGCGTGGGCATCATGCAGCACATCGAGAGGT
AAACGATACCATCAAAGTGGACCTGGAGACCGGCAAGGCCATCGAGACCA
TCAAGTTCGAGATTGGTAATGTGTGCATGATCTCCCGGGGGCGTAACGCG
GGTCGCGTGGGCATCATGCAGCACATCGAGAGGCACCCAGGTTCGTTCGA
CATCGTATCGGTGAAGGATGGCGCCGGGCATGTCTTTGCCACCCGCCTTC
AGAATATATTTGTGATGGGCCACGGAACTCGCGCCATGGTAGCACCCAGG
TTCGTTCGACATCGTATCGGTGAAGGATGGCGCCGGGCATGTCTTTGCCA
CCCGCCTTCAGAATATATTTGTGATGGGCCACGGAACTCGCGCCATGGTA
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