mRNA_H-elongata_contig119927.1539.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119927.1539.1
Unique NamemRNA_H-elongata_contig119927.1539.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig119927.1539.1 vs. uniprot
Match: A0A6H5JDV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDV4_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.620e-14
Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:  202 HGVDHGGGVYSKPGRKGPRVRGSHVGPGTFGCGRLGLLFTAFRFLHRRIIRRGRHGNNHNSSGRQ 396
            HGVDHG           PR+RGSHVGPGTFGCGRLG+LF AFRFL R++ ++ + GN HN+  RQ
Sbjct:   84 HGVDHGXXXXXXXXXXXPRMRGSHVGPGTFGCGRLGMLFMAFRFLQRKVGKKNKKGN-HNNXXRQ 147
[Close]
BLAST of mRNA_H-elongata_contig119927.1539.1 vs. uniprot
Match: D7FM21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM21_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 3.230e-8
Identity = 24/30 (80.00%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:  259 VRGSHVGPGTFGCGRLGLLFTAFRFLHRRI 348
            +RGSHVGPGTFGCGRLG+LF AFRFL R++
Sbjct:    1 MRGSHVGPGTFGCGRLGMLFMAFRFLQRKV 30
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119927.1539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JDV4_9PHAE1.620e-1458.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FM21_ECTSI3.230e-880.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119927contigH-elongata_contig119927:245..658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_010350.1
Exons1
Model size414
Cds size414
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929702.8370128-CDS-H-elongata_contig119927:244..6581622929702.8370128-CDS-H-elongata_contig119927:244..658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119927 245..658 -
1691679125.0373392-CDS-H-elongata_contig119927:244..6581691679125.0373392-CDS-H-elongata_contig119927:244..658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119927 245..658 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119927.1539.1prot_H-elongata_contig119927.1539.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119927 245..658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119927.1539.1

>prot_H-elongata_contig119927.1539.1 ID=prot_H-elongata_contig119927.1539.1|Name=mRNA_H-elongata_contig119927.1539.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=138bp
QQHQQLQQHQQQQQQQRRQQNKGREGGKGSGRGGGRVTGGRGRGRGGRRG
GGGGRGRGTGNGGRNARHGVDHGGGVYSKPGRKGPRVRGSHVGPGTFGCG
RLGLLFTAFRFLHRRIIRRGRHGNNHNSSGRQGWSEE*
back to top

mRNA from alignment at H-elongata_contig119927:245..658-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119927.1539.1 ID=mRNA_H-elongata_contig119927.1539.1|Name=mRNA_H-elongata_contig119927.1539.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=414bp|location=Sequence derived from alignment at H-elongata_contig119927:245..658- (Himanthalia elongata Himel1 dioecious)
CAGCAACATCAGCAACTGCAGCAACATCAACAACAGCAGCAGCAGCAGCG
TAGACAACAAAACAAAGGGCGCGAAGGAGGGAAGGGAAGCGGAAGAGGTG
GTGGGCGTGTCACTGGAGGAAGAGGGAGGGGGCGAGGAGGTAGGCGTGGA
GGAGGAGGAGGCCGAGGGCGTGGGACTGGAAATGGAGGAAGGAACGCTCG
CCACGGCGTTGATCACGGAGGTGGGGTGTACTCAAAGCCTGGCCGGAAGG
GCCCGCGAGTGAGGGGCAGCCACGTTGGGCCTGGCACGTTCGGATGCGGG
CGCCTAGGCCTTCTGTTCACCGCCTTCCGCTTCTTGCACCGTCGGATAAT
CCGGAGAGGGAGGCATGGTAACAATCACAACTCCAGCGGGAGGCAAGGTT
GGTCAGAAGAGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig119927:245..658-

>mRNA_H-elongata_contig119927.1539.1 ID=mRNA_H-elongata_contig119927.1539.1|Name=mRNA_H-elongata_contig119927.1539.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at H-elongata_contig119927:245..658- (Himanthalia elongata Himel1 dioecious)
CAGCAACATCAGCAACTGCAGCAACATCAACAACAGCAGCAGCAGCAGCG
TAGACAACAAAACAAAGGGCGCGAAGGAGGGAAGGGAAGCGGAAGAGGTG
GTGGGCGTGTCACTGGAGGAAGAGGGAGGGGGCGAGGAGGTAGGCGTGGA
GGAGGAGGAGGCCGAGGGCGTGGGACTGGAAATGGAGGAAGGAACGCTCG
CCACGGCGTTGATCACGGAGGTGGGGTGTACTCAAAGCCTGGCCGGAAGG
GCCCGCGAGTGAGGGGCAGCCACGTTGGGCCTGGCACGTTCGGATGCGGG
CGCCTAGGCCTTCTGTTCACCGCCTTCCGCTTCTTGCACCGTCGGATAAT
CCGGAGAGGGAGGCATGGTAACAATCACAACTCCAGCGGGAGGCAAGGTT
GGTCAGAAGAGTGACAGCAACATCAGCAACTGCAGCAACATCAACAACAG
CAGCAGCAGCAGCGTAGACAACAAAACAAAGGGCGCGAAGGAGGGAAGGG
AAGCGGAAGAGGTGGTGGGCGTGTCACTGGAGGAAGAGGGAGGGGGCGAG
GAGGTAGGCGTGGAGGAGGAGGAGGCCGAGGGCGTGGGACTGGAAATGGA
GGAAGGAACGCTCGCCACGGCGTTGATCACGGAGGTGGGGTGTACTCAAA
GCCTGGCCGGAAGGGCCCGCGAGTGAGGGGCAGCCACGTTGGGCCTGGCA
CGTTCGGATGCGGGCGCCTAGGCCTTCTGTTCACCGCCTTCCGCTTCTTG
CACCGTCGGATAATCCGGAGAGGGAGGCATGGTAACAATCACAACTCCAG
CGGGAGGCAAGGTTGGTCAGAAGAGTGA
back to top