mRNA_H-elongata_contig11986.1534.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig11986.1534.1 vs. uniprot
Match: A0A6H5L1H5_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1H5_9PHAE) HSP 1 Score: 412 bits (1058), Expect = 5.760e-140 Identity = 228/396 (57.58%), Postives = 279/396 (70.45%), Query Frame = 1
Query: 1 MGSGGSILLPAPDERLLKIIKILTLSNSELAKIFEIFNNH--AQRGCLTLGNMYKLLGERKSIFGDSLFELIGVHDFQKLAFSEWLHAITTFCLFGEEDILKFCFFVLDQEKNGYIEREDIRMLISMLYHIDPIKGPSGNTKVAFDKFSIQQDGKIEFWEFEILNQAFPSLVFPAFRLQ------------VKMMQAILGEQWWNRKKQLLQDETDKRRCLEEEGRMAEAKRLEAMRQLRIKRKMGKLKYYCCPCGRVMYDNMFPKAIVLVVDPEQEKAERLRK---------------------------EALARAALEKEREACLMNPETAEYKNYREKMDTKREKQRDQTNKRLPQPR-RPVKRENTAYNRRLRVENRRAKDGRRPVVERGLG 1062
MGS GS LLPAPD+RLLK IKIL LSN++LAK+F +F + AQRGCL+L N+YK++GE+KSIFGDSL+ELIG+ DFQ+L FSEWL AITTFCLF EE+IL+FCFF+LD+EKNGYIE+E++RML++MLY+IDP+KGP+GNTKVAFDK S+QQDGKIEFWEFE+ N+AFPSL+FPAFRLQ VKMMQA+ GE WW RKK+ +QD + RR EEE R+A+A RLEAMRQ RIK KMG KY+C PCGR YD MFP+ V+V DP ++AERLRK +A +A L++E EA +N ET EYK +REK+D K+EK R V N A RRLR+ENRR K+GR P V G
Sbjct: 1 MGSSGSTLLPAPDDRLLKSIKILDLSNTDLAKVFRLFCKYDTAQRGCLSLANVYKMIGEKKSIFGDSLYELIGIRDFQELTFSEWLDAITTFCLFEEEEILRFCFFILDREKNGYIEKEEMRMLVNMLYNIDPVKGPTGNTKVAFDKLSVQQDGKIEFWEFELFNKAFPSLLFPAFRLQSTNPPAALTQTKVKMMQAVWGEAWWGRKKRKVQDRLELRRKHEEEDRLADANRLEAMRQRRIKSKMGACKYFCWPCGRAEYDKMFPRTNVVVADPGADEAERLRKVLRMIPPEDVNMREDRKRGGPAYITPAQAEEKARLQREMEARYLNYETQEYKKFREKLDAKKEKXXXXXXXXXXXXXXRSVXXXNNADERRLRLENRRVKNGRLPPVGGAFG 396
BLAST of mRNA_H-elongata_contig11986.1534.1 vs. uniprot
Match: D7G2J3_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2J3_ECTSI) HSP 1 Score: 394 bits (1013), Expect = 6.740e-134 Identity = 194/272 (71.32%), Postives = 232/272 (85.29%), Query Frame = 1
Query: 1 MGSGGSILLPAPDERLLKIIKILTLSNSELAKIFEIFNNH--AQRGCLTLGNMYKLLGERKSIFGDSLFELIGVHDFQKLAFSEWLHAITTFCLFGEEDILKFCFFVLDQEKNGYIEREDIRMLISMLYHIDPIKGPSGNTKVAFDKFSIQQDGKIEFWEFEILNQAFPSLVFPAFRLQVKMMQAILGEQWWNRKKQLLQDETDKRRCLEEEGRMAEAKRLEAMRQLRIKRKMGKLKYYCCPCGRVMYDNMFPKAIVLVVDPEQEKAERLRK 810
MGS GS LLPAPD+RLLK IKIL LSN++LAK+F +F + AQRGCL+L N+YK+LGE+KSIFGDSLFELIG+ DFQ+L FSEWL AITTFCLF EE+IL+FCFF+LD+EKNGYIE++++RML++MLY+IDP+KGP+GNTKVAFDK S+QQDGKIEFWEFE+ N+AFPSL FPAFRLQVKMMQA+ GE WW RKK+ QD + RR EEE R+A+A RLEAMRQ RIKRKMG KY+C PCGR YD MFP+A V+V DP ++AERLRK
Sbjct: 1 MGSSGSTLLPAPDDRLLKSIKILDLSNTDLAKVFRLFCKYDTAQRGCLSLANVYKMLGEKKSIFGDSLFELIGIRDFQELTFSEWLDAITTFCLFEEEEILRFCFFILDREKNGYIEKDEMRMLVNMLYNIDPVKGPTGNTKVAFDKLSVQQDGKIEFWEFELFNKAFPSLFFPAFRLQVKMMQAVWGEAWWGRKKRNFQDRLELRRKHEEEDRLADANRLEAMRQRRIKRKMGACKYFCWPCGRAEYDKMFPRANVVVADPAADEAERLRK 272
BLAST of mRNA_H-elongata_contig11986.1534.1 vs. uniprot
Match: A0A835ZCW1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCW1_9STRA) HSP 1 Score: 235 bits (599), Expect = 2.890e-70 Identity = 132/355 (37.18%), Postives = 204/355 (57.46%), Query Frame = 1
Query: 10 GGSILLPAPDERLLKIIKILTLSNSELAKIFEIFNNH--AQRGCLTLGNMYKLLGERKSIFGDSLFELIGVHDFQKLAFSEWLHAITTFCLFGEEDILKFCFFVLDQEKNG------------------YIEREDIRMLISMLYHIDPIKGPSGNTK------------------------------VAFDKFSIQQDGKIEFWEFEILNQAFPSLVFPAFRLQVKMMQAILGEQWWNRKKQLLQDETDKRRCLEEEGRMAEAKRLEAMRQLRIKRKMGKLKYYCCPCGRVMYDNMFPK-------AIVLVVDPEQEKAERLRKEALARAALEKEREACLMNPETAEYKNYREKM 903
GG LLP PD+R+ IK L L+N+ELA+ F+IF H A++G + L YK++GERKS+FGDS+F+L+GV D +++ F EWL AI T+CLF E D+LK+CF++LD+EK YI ++ ++L +LY++D + PSGNT+ +A +K +Q DGKIEFWE E+ N+AFPSL++PAFR+QVKM Q + GE WW+R++++L ++ R+ LE A+ KR R++RK+G ++YCCP Y + P A + + Q+ +L + A+A L++ + ++ PET EY+ Y+E++
Sbjct: 3 GGISLLPEPDDRIANCIKALCLNNTELAQAFDIFQAHDTAKKGTIPLATFYKMIGERKSMFGDSIFDLLGVRDTREIDFGEWLQAIVTYCLFDESDVLKYCFYILDREKQQLRKGAVGGAKADAFIKERYIVMDESKLLADLLYNVDCKRRPSGNTRNGXXXXXXXXXXXXXXXXXXXXXXXXXXXRIALNKVPVQADGKIEFWELELFNKAFPSLLYPAFRMQVKMTQLVWGEDWWDRRRRMLNEDVATRKELERLALEADKKRRRKAYDQRVRRKLGVARFYCCPWAVDRYQELHPMDPPPLTPAQLAAMAAAQKTEAQL---SAAKAKLKRVMDMQMLIPETEEYRRYKERV 354
BLAST of mRNA_H-elongata_contig11986.1534.1 vs. uniprot
Match: A0A7S2C3E2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C3E2_9STRA) HSP 1 Score: 224 bits (572), Expect = 2.340e-67 Identity = 118/302 (39.07%), Postives = 191/302 (63.25%), Query Frame = 1
Query: 1 MGSGGSILLPAPDERLLKIIKILTLSNSELAKIFEIFNNHAQR--GCLTLGNMYKLLGERKSIFGDSLFELIGVHDFQKLAFSEWLHAITTFCLFGEEDILKFCFFVLDQEKNGYIEREDIRMLISMLYHIDPIKGPSGNTKVAFDKFSIQQDGKIEFWEFEILNQAFPSLVFPAFRLQVKMMQAILGEQWWNRKKQLLQDETDKRRCLEEEGRMAEAKRLEAMRQLRIKRKMGKLKYYCCPCGRVMYDNMFPKAIVLVVDPEQEK--AERLRKEALARAALEKEREACLMNPETAEYKNYR 894
MG+ S+ P PD R LK +++ ++ EL + F + ++ G + + + YK E++SIFGD++FELI + L F E++HA+ T+CLF ++++L+FCF++ D++KNGYIE+E++R ++++LY + P GNTKVA D+ DGK++F EF+ N++FP+L +PAFR+QV M+ I G+ WW +KK+ LQDE D++R EE + E RL M+Q +I++KMG ++Y+CC R Y+ +FP + D + EK A+ + A AR + E + NPET E+ Y+
Sbjct: 1 MGAANSV--PTPDSRTLKAMELGHINMKELGIFWSAFRSIDKKLTGSVDISDFYKFFEEKRSIFGDAIFELIDCNQSGSLDFGEFVHAVVTYCLFEQDEMLRFCFYIFDKDKNGYIEQEELRWMVNILYGLGPTDKLKGNTKVAVDRLDFNDDGKVDFKEFKEFNRSFPALFYPAFRIQVNMINLIAGDAWWEKKKRWLQDEKDRKRAREEYSKRKEKARLRKMQQRKIRKKMGYVRYFCCFLERKKYELLFP---IEDSDNKNEKTAAQLAEERAKAREKAKHLAELAIKNPETEEWHMYK 297
BLAST of mRNA_H-elongata_contig11986.1534.1 vs. uniprot
Match: A0A6S8V9R4_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8V9R4_9STRA) HSP 1 Score: 197 bits (502), Expect = 5.990e-57 Identity = 120/345 (34.78%), Postives = 196/345 (56.81%), Query Frame = 1
Query: 10 GGSILLPAPDERLLKIIKILTLSNSELAKIFEIFNNHAQR--GCLTLGNMYKLLGERKSIFGDSLFELIGVHDFQKLAFSEWLHAITTFCLFGEEDILKFCFFVLDQEKNGYIEREDIRMLISMLYHIDPIKGPSGNTKVAFDKFSIQQDGKIEFWEFEILNQAFPSLVFPAFRLQVKMMQAILGEQWWNRKKQLLQDETDKRRCLEEEGRMAEAKRLEAMRQLRIKRKMGKLKYYCCPCGRVMYDNMFPKAIVLVVDPEQEK----AERLRKEALARAALEKEREACLMNPETAEYKNYREKMDTKREKQRDQTNKRLPQPRRPVKRENTAYNRRLRVENRRAK 1026
G S+ +P PD R LK+++ + + ELA + F + G + + Y L E++SIFGD +F+L +H ++L F E+L A+ T+CLF ++IL+FCF++ D++KNGYI +E++ +++ +LYHI P SGNT+ A + D K+++ EF + FP+L +PAFR+Q M+ +G++WW++KK+ L +E +R +E+ E RL +R+ RI++KMG L+Y CP R + +FP V D + EK AE ++A R + RE NPET+ + +Y +K T+ E + ++ P+ +A R LR RRAK
Sbjct: 2 GASMTVPNPDHRTLKVMEFINIGVKELAVFWRHFREGDKEMLGVIAIDQFYLLFHEKRSIFGDGIFDLCDIHHTEELDFGEYLVAVITYCLFEPQEILRFCFYIFDRDKNGYIMKEELELMLRVLYHIVPPNDFSGNTRNALELLDFNDDEKVDWQEFNRFHVLFPALFYPAFRIQQTMITQTMGQRWWDKKKRYLHEEKVRRDMIEQLAARKEHARLLKLREKRIRKKMGLLRYMFCPAQRAAFRKLFP-----VDDAQAEKTLSEAELQVQKAKQREVERRLRELNAKNPETSAWGDY-QKRKTRMEYAQQSADRTHPR--------RSANERALRAATRRAK 332
BLAST of mRNA_H-elongata_contig11986.1534.1 vs. uniprot
Match: A0A2R5GWK3_9STRA (Calmodulin-like protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GWK3_9STRA) HSP 1 Score: 186 bits (472), Expect = 3.100e-52 Identity = 99/233 (42.49%), Postives = 142/233 (60.94%), Query Frame = 1
Query: 25 LPAPDERLLKIIKILTLSNSELAKIFEIFNNHAQR--GCLTLGNMYKLLGERKSIFGDSLFELIGVHDFQKLAFSEWLHAITTFCLFGEEDILKFCFFVLDQEKNGYIEREDIRMLISMLYHIDPIKGPSGNTKVAFDKFSIQQDGKIEFWEFEILNQAFPSLVFPAFRLQVKMMQAILGEQWWNRKKQLLQDETDKRRCLEEEGRMAEAKRLEAMRQLRIKRKMGKLKYYCC 717
+P PD+RL K I +L LS E+ K + IF + + G + + Y+L+ E +++FGDSLFEL+ + L FSE++ I T+ LF DILKFCFFV D++KNGYI+ +++ L+ ML+ P+ N + A F DGKI+F EF+ +N FP L+ PAFR+Q MM LGEQWWN KK +LQ+E + LEE R+ E +R +Q +++ KMG YY C
Sbjct: 5 IPVPDDRLQKTIDMLKLSKKEINKFWRIFQKYDRDHGGTIDVEEFYRLIEEERTVFGDSLFELVDIDCSGTLDFSEFVQTIATYALFARVDILKFCFFVFDKDKNGYIDSDELHALVEMLHG----NNPTSNCRTALANFDTNSDGKIDFEEFQAMNVRFPQLLHPAFRMQQNMMINTLGEQWWNGKKLMLQEERNADNALEERLRLKELQRQHRNQQRQVRHKMGFFGYYFC 233
BLAST of mRNA_H-elongata_contig11986.1534.1 vs. uniprot
Match: A0A024TD15_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TD15_9STRA) HSP 1 Score: 168 bits (426), Expect = 8.070e-46 Identity = 100/256 (39.06%), Postives = 145/256 (56.64%), Query Frame = 1
Query: 25 LPAPDERLLKIIKILTLSNSELAKIFEIFNN---------------HAQRGCLTLGNMYKLLGERKSIFGDSLFELIGVHDFQKLAFSEWLHAITTFCLFGEEDILKFCFFVLDQEKNGYIEREDIRMLISMLYHIDPIKGPSGNTKVAFDKFSIQQDGKIEFWEFEILNQAFPSLVFPAFRLQVKMMQAILGEQWWNRKKQLLQDETDKRRCLEEEG---RMAEAKRLEAMRQLRIKRKMGKLKYYCCPCGRVMY 738
+PAPDER+LK I+ L L+ S+L +++ F+N H+ G + ++ E ++ GD++F LI + + +L FSE++ A+ FCL +++LKFCFFV DQ+KNG IE ++ L+ ML H D + N A DKF DGK++F EF+ILNQ FP+L++P +RLQ M +GE WWN++ LL D L E G +A AK E R+ R + MG L+YY CPC R Y
Sbjct: 7 IPAPDERMLKTIEKLQLNESDLRTLYKRFSNSSPRFQRGLLMRSLDHSNSGSINRTEFFRSFREERTAVGDAVFALIDIDNSGQLDFSEYVEALGAFCLLNTDEVLKFCFFVFDQDKNGTIEGMELDALLEML-HAD---NATSNMAAAMDKFDFNGDGKVDFREFQILNQQFPTLLYPVYRLQQSMKVHSMGEAWWNKRATLLSQLKD----LRENGDATALAAAKAKEQRRKTR--QNMGCLRYYLCPCRRSAY 252
BLAST of mRNA_H-elongata_contig11986.1534.1 vs. uniprot
Match: W4FPF5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FPF5_9STRA) HSP 1 Score: 168 bits (425), Expect = 9.720e-46 Identity = 97/246 (39.43%), Postives = 144/246 (58.54%), Query Frame = 1
Query: 25 LPAPDERLLKIIKILTLSNSELAKIFEIFNNH-------AQRGCLTLGNMYKLLGERKSIFGDSLFELIGVHDFQKLAFSEWLHAITTFCLFGEEDILKFCFFVLDQEKNGYIEREDIRMLISMLYHIDPIKGPSGNTKVAFDKFSIQQDGKIEFWEFEILNQAFPSLVFPAFRLQVKMMQAILGEQWWNRKKQLLQDETDKRRCLEEEGRMAEAKRLEAM-RQLRIKRKMGKLKYYCCPCGRVMY 738
+PAPDER+LK I+ L L+ S+L +++ F+ + G + ++ E ++ GD++F LI + + +L FSE++ A+ FCL ++ILKFCFFV DQ+KNG IE ++ L+ ML H D + N A +KF DGK++F EF+ILNQ FP+L++P +RLQ M +GE WWNR+ LL D D L+E G A +A R+ + ++ MG L+YY CPC R Y
Sbjct: 7 IPAPDERMLKTIEKLQLNESDLRALYKRFSKSDKEVRRTSNSGSIDRTEFFRSFNEERTAVGDAVFALIDIDNSGQLDFSEYVEALGAFCLLNTDEILKFCFFVFDQDKNGTIEGMELDALLEML-HSD---SATSNMAAAMEKFDFNGDGKVDFKEFQILNQQFPTLLYPVYRLQQSMKVHSMGESWWNRRATLLNDLKD----LKENGDAAAIAASKAKDRRRKTRQNMGCLRYYLCPCRRSAY 244
BLAST of mRNA_H-elongata_contig11986.1534.1 vs. uniprot
Match: A0A7S2D7S8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D7S8_9STRA) HSP 1 Score: 164 bits (415), Expect = 1.870e-44 Identity = 89/264 (33.71%), Postives = 156/264 (59.09%), Query Frame = 1
Query: 28 PAPDERLLKIIKILTLSNSELAKIFEIFN--NHAQRGCLTLGNMY-KLLGERKSIFGDSLFELIGVHDFQKLAFSEWLHAITTFCLFGEEDILKFCFFVLDQEKNGYIEREDIRMLISMLYHIDPIKGPSGNTKVAFDKFSIQQDGKIEFWEFEILNQAFPSLVFPAFRLQVKMMQAILGEQWWNRKKQLLQDETDKRRCLEEEGRMAEAKRLEAMRQLRIKRKMGKLKYYCCPCGRVMYDNMFP----KAIVLVVDPEQEKAE 798
P D+R+ + +++ L+ S++ + +F ++ + G + + + K++ E +++FG+++FELI D KL F E+L + T+C F E +IL+FCFF+ D+EKNGYI++++++ + +L++ + N + AF Q DGK +F EF+ LN+ FP++++PAFR+Q MM I+GE WW +KK +L + + +R E E RQ +I+ MG +KYY P R M+D +P + + L+ E+EK E
Sbjct: 6 PVADDRVQRAAEMVKLNVSDIKGFWNVFRKCDYDRIGIVATEDFFTKIVQEGRNMFGNAIFELIDAEDPDKLEFGEFLQGVVTYCCFDELEILQFCFFIFDREKNGYIDQDELKFFVDVLHNEQQV----ANVRTAFQSIKFQTDGKFDFPEFQKLNKDFPTVLYPAFRMQQNMMLNIMGEDWWRQKKLMLTLDKEDQRSAHARMMRREFNNRERTRQKQIRHDMGPVKYYLQPSKRSMFDEKYPPMSMEELELIKAKEREKLE 265
BLAST of mRNA_H-elongata_contig11986.1534.1 vs. uniprot
Match: A0A8J2S6B5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S6B5_9STRA) HSP 1 Score: 154 bits (390), Expect = 5.500e-41 Identity = 95/271 (35.06%), Postives = 158/271 (58.30%), Query Frame = 1
Query: 28 PAPDERLLKIIKILTLSNSELAKIFEIFNNH--AQRGCLTLGNMY-KLLGERKSIFGDSLFELIGVHDFQKLAFSEWLHAITTFCLFGEEDILKFCFFVLDQEKNGYIEREDIRMLISMLYHIDPIKGPSGNTKVAFDKFSIQQDGKIEFWEFEILNQAFPSLVFPAFRLQVKMMQAILGEQWWNRKKQLL--QDETDKRRCLEEEGR-MAEAKRLEAMRQLRIKRKMGKLKYYCCPCGRVMYDNMFPKAIVLVVDPEQEKAERLRKEALA 822
P D+R+ K ++ L ++ ++ +F H +R + + + Y K++ ++IF D LF+LI D + + F E++ A+TT+C F ++LKFCFFV D++K G+I +E++R+ + ++ + S N + A D ++DGK +F EF+ ++ +PS++FPAFRLQ MMQA+ GEQ+W KK L Q E +++R E R AEA + R+ +++R MG +KYY P R Y ++P V EQE+A R++ LA
Sbjct: 14 PTADDRIAKAMQTFNLKEKDIRVLWHMFKKHDKERRSIIAISDFYDKIVFVPRTIFCDGLFDLIEAADSESIDFGEFVAAVTTYCFFEIPEVLKFCFFVFDRDKKGFITQEEMRLFVDAMHGNEM----STNVEFALDNLKYRKDGKFDFEEFKGMHHLYPSVLFPAFRLQNAMMQAMGGEQFWESKKLELSMQKEDERKREANREAREKAEAYKY---REDQVRRHMGSIKYYLMPKNRAKYYEVYPLPKKYRVMEEQERARAKREKQLA 277 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11986.1534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11986.1534.1 >prot_H-elongata_contig11986.1534.1 ID=prot_H-elongata_contig11986.1534.1|Name=mRNA_H-elongata_contig11986.1534.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=359bp MGSGGSILLPAPDERLLKIIKILTLSNSELAKIFEIFNNHAQRGCLTLGNback to top mRNA from alignment at H-elongata_contig11986:5267..7552- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig11986.1534.1 ID=mRNA_H-elongata_contig11986.1534.1|Name=mRNA_H-elongata_contig11986.1534.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2286bp|location=Sequence derived from alignment at H-elongata_contig11986:5267..7552- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig11986:5267..7552- >mRNA_H-elongata_contig11986.1534.1 ID=mRNA_H-elongata_contig11986.1534.1|Name=mRNA_H-elongata_contig11986.1534.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2154bp|location=Sequence derived from alignment at H-elongata_contig11986:5267..7552- (Himanthalia elongata Himel1 dioecious)back to top |