mRNA_H-elongata_contig11986.1534.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11986.1534.1
Unique NamemRNA_H-elongata_contig11986.1534.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig11986.1534.1 vs. uniprot
Match: A0A6H5L1H5_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1H5_9PHAE)

HSP 1 Score: 412 bits (1058), Expect = 5.760e-140
Identity = 228/396 (57.58%), Postives = 279/396 (70.45%), Query Frame = 1
Query:    1 MGSGGSILLPAPDERLLKIIKILTLSNSELAKIFEIFNNH--AQRGCLTLGNMYKLLGERKSIFGDSLFELIGVHDFQKLAFSEWLHAITTFCLFGEEDILKFCFFVLDQEKNGYIEREDIRMLISMLYHIDPIKGPSGNTKVAFDKFSIQQDGKIEFWEFEILNQAFPSLVFPAFRLQ------------VKMMQAILGEQWWNRKKQLLQDETDKRRCLEEEGRMAEAKRLEAMRQLRIKRKMGKLKYYCCPCGRVMYDNMFPKAIVLVVDPEQEKAERLRK---------------------------EALARAALEKEREACLMNPETAEYKNYREKMDTKREKQRDQTNKRLPQPR-RPVKRENTAYNRRLRVENRRAKDGRRPVVERGLG 1062
            MGS GS LLPAPD+RLLK IKIL LSN++LAK+F +F  +  AQRGCL+L N+YK++GE+KSIFGDSL+ELIG+ DFQ+L FSEWL AITTFCLF EE+IL+FCFF+LD+EKNGYIE+E++RML++MLY+IDP+KGP+GNTKVAFDK S+QQDGKIEFWEFE+ N+AFPSL+FPAFRLQ            VKMMQA+ GE WW RKK+ +QD  + RR  EEE R+A+A RLEAMRQ RIK KMG  KY+C PCGR  YD MFP+  V+V DP  ++AERLRK                           +A  +A L++E EA  +N ET EYK +REK+D K+EK              R V   N A  RRLR+ENRR K+GR P V    G
Sbjct:    1 MGSSGSTLLPAPDDRLLKSIKILDLSNTDLAKVFRLFCKYDTAQRGCLSLANVYKMIGEKKSIFGDSLYELIGIRDFQELTFSEWLDAITTFCLFEEEEILRFCFFILDREKNGYIEKEEMRMLVNMLYNIDPVKGPTGNTKVAFDKLSVQQDGKIEFWEFELFNKAFPSLLFPAFRLQSTNPPAALTQTKVKMMQAVWGEAWWGRKKRKVQDRLELRRKHEEEDRLADANRLEAMRQRRIKSKMGACKYFCWPCGRAEYDKMFPRTNVVVADPGADEAERLRKVLRMIPPEDVNMREDRKRGGPAYITPAQAEEKARLQREMEARYLNYETQEYKKFREKLDAKKEKXXXXXXXXXXXXXXRSVXXXNNADERRLRLENRRVKNGRLPPVGGAFG 396          
BLAST of mRNA_H-elongata_contig11986.1534.1 vs. uniprot
Match: D7G2J3_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2J3_ECTSI)

HSP 1 Score: 394 bits (1013), Expect = 6.740e-134
Identity = 194/272 (71.32%), Postives = 232/272 (85.29%), Query Frame = 1
Query:    1 MGSGGSILLPAPDERLLKIIKILTLSNSELAKIFEIFNNH--AQRGCLTLGNMYKLLGERKSIFGDSLFELIGVHDFQKLAFSEWLHAITTFCLFGEEDILKFCFFVLDQEKNGYIEREDIRMLISMLYHIDPIKGPSGNTKVAFDKFSIQQDGKIEFWEFEILNQAFPSLVFPAFRLQVKMMQAILGEQWWNRKKQLLQDETDKRRCLEEEGRMAEAKRLEAMRQLRIKRKMGKLKYYCCPCGRVMYDNMFPKAIVLVVDPEQEKAERLRK 810
            MGS GS LLPAPD+RLLK IKIL LSN++LAK+F +F  +  AQRGCL+L N+YK+LGE+KSIFGDSLFELIG+ DFQ+L FSEWL AITTFCLF EE+IL+FCFF+LD+EKNGYIE++++RML++MLY+IDP+KGP+GNTKVAFDK S+QQDGKIEFWEFE+ N+AFPSL FPAFRLQVKMMQA+ GE WW RKK+  QD  + RR  EEE R+A+A RLEAMRQ RIKRKMG  KY+C PCGR  YD MFP+A V+V DP  ++AERLRK
Sbjct:    1 MGSSGSTLLPAPDDRLLKSIKILDLSNTDLAKVFRLFCKYDTAQRGCLSLANVYKMLGEKKSIFGDSLFELIGIRDFQELTFSEWLDAITTFCLFEEEEILRFCFFILDREKNGYIEKDEMRMLVNMLYNIDPVKGPTGNTKVAFDKLSVQQDGKIEFWEFELFNKAFPSLFFPAFRLQVKMMQAVWGEAWWGRKKRNFQDRLELRRKHEEEDRLADANRLEAMRQRRIKRKMGACKYFCWPCGRAEYDKMFPRANVVVADPAADEAERLRK 272          
BLAST of mRNA_H-elongata_contig11986.1534.1 vs. uniprot
Match: A0A835ZCW1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCW1_9STRA)

HSP 1 Score: 235 bits (599), Expect = 2.890e-70
Identity = 132/355 (37.18%), Postives = 204/355 (57.46%), Query Frame = 1
Query:   10 GGSILLPAPDERLLKIIKILTLSNSELAKIFEIFNNH--AQRGCLTLGNMYKLLGERKSIFGDSLFELIGVHDFQKLAFSEWLHAITTFCLFGEEDILKFCFFVLDQEKNG------------------YIEREDIRMLISMLYHIDPIKGPSGNTK------------------------------VAFDKFSIQQDGKIEFWEFEILNQAFPSLVFPAFRLQVKMMQAILGEQWWNRKKQLLQDETDKRRCLEEEGRMAEAKRLEAMRQLRIKRKMGKLKYYCCPCGRVMYDNMFPK-------AIVLVVDPEQEKAERLRKEALARAALEKEREACLMNPETAEYKNYREKM 903
            GG  LLP PD+R+   IK L L+N+ELA+ F+IF  H  A++G + L   YK++GERKS+FGDS+F+L+GV D +++ F EWL AI T+CLF E D+LK+CF++LD+EK                    YI  ++ ++L  +LY++D  + PSGNT+                              +A +K  +Q DGKIEFWE E+ N+AFPSL++PAFR+QVKM Q + GE WW+R++++L ++   R+ LE     A+ KR       R++RK+G  ++YCCP     Y  + P        A +  +   Q+   +L   + A+A L++  +  ++ PET EY+ Y+E++
Sbjct:    3 GGISLLPEPDDRIANCIKALCLNNTELAQAFDIFQAHDTAKKGTIPLATFYKMIGERKSMFGDSIFDLLGVRDTREIDFGEWLQAIVTYCLFDESDVLKYCFYILDREKQQLRKGAVGGAKADAFIKERYIVMDESKLLADLLYNVDCKRRPSGNTRNGXXXXXXXXXXXXXXXXXXXXXXXXXXXRIALNKVPVQADGKIEFWELELFNKAFPSLLYPAFRMQVKMTQLVWGEDWWDRRRRMLNEDVATRKELERLALEADKKRRRKAYDQRVRRKLGVARFYCCPWAVDRYQELHPMDPPPLTPAQLAAMAAAQKTEAQL---SAAKAKLKRVMDMQMLIPETEEYRRYKERV 354          
BLAST of mRNA_H-elongata_contig11986.1534.1 vs. uniprot
Match: A0A7S2C3E2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C3E2_9STRA)

HSP 1 Score: 224 bits (572), Expect = 2.340e-67
Identity = 118/302 (39.07%), Postives = 191/302 (63.25%), Query Frame = 1
Query:    1 MGSGGSILLPAPDERLLKIIKILTLSNSELAKIFEIFNNHAQR--GCLTLGNMYKLLGERKSIFGDSLFELIGVHDFQKLAFSEWLHAITTFCLFGEEDILKFCFFVLDQEKNGYIEREDIRMLISMLYHIDPIKGPSGNTKVAFDKFSIQQDGKIEFWEFEILNQAFPSLVFPAFRLQVKMMQAILGEQWWNRKKQLLQDETDKRRCLEEEGRMAEAKRLEAMRQLRIKRKMGKLKYYCCPCGRVMYDNMFPKAIVLVVDPEQEK--AERLRKEALARAALEKEREACLMNPETAEYKNYR 894
            MG+  S+  P PD R LK +++  ++  EL   +  F +  ++  G + + + YK   E++SIFGD++FELI  +    L F E++HA+ T+CLF ++++L+FCF++ D++KNGYIE+E++R ++++LY + P     GNTKVA D+     DGK++F EF+  N++FP+L +PAFR+QV M+  I G+ WW +KK+ LQDE D++R  EE  +  E  RL  M+Q +I++KMG ++Y+CC   R  Y+ +FP   +   D + EK  A+   + A AR   +   E  + NPET E+  Y+
Sbjct:    1 MGAANSV--PTPDSRTLKAMELGHINMKELGIFWSAFRSIDKKLTGSVDISDFYKFFEEKRSIFGDAIFELIDCNQSGSLDFGEFVHAVVTYCLFEQDEMLRFCFYIFDKDKNGYIEQEELRWMVNILYGLGPTDKLKGNTKVAVDRLDFNDDGKVDFKEFKEFNRSFPALFYPAFRIQVNMINLIAGDAWWEKKKRWLQDEKDRKRAREEYSKRKEKARLRKMQQRKIRKKMGYVRYFCCFLERKKYELLFP---IEDSDNKNEKTAAQLAEERAKAREKAKHLAELAIKNPETEEWHMYK 297          
BLAST of mRNA_H-elongata_contig11986.1534.1 vs. uniprot
Match: A0A6S8V9R4_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8V9R4_9STRA)

HSP 1 Score: 197 bits (502), Expect = 5.990e-57
Identity = 120/345 (34.78%), Postives = 196/345 (56.81%), Query Frame = 1
Query:   10 GGSILLPAPDERLLKIIKILTLSNSELAKIFEIFNNHAQR--GCLTLGNMYKLLGERKSIFGDSLFELIGVHDFQKLAFSEWLHAITTFCLFGEEDILKFCFFVLDQEKNGYIEREDIRMLISMLYHIDPIKGPSGNTKVAFDKFSIQQDGKIEFWEFEILNQAFPSLVFPAFRLQVKMMQAILGEQWWNRKKQLLQDETDKRRCLEEEGRMAEAKRLEAMRQLRIKRKMGKLKYYCCPCGRVMYDNMFPKAIVLVVDPEQEK----AERLRKEALARAALEKEREACLMNPETAEYKNYREKMDTKREKQRDQTNKRLPQPRRPVKRENTAYNRRLRVENRRAK 1026
            G S+ +P PD R LK+++ + +   ELA  +  F    +   G + +   Y L  E++SIFGD +F+L  +H  ++L F E+L A+ T+CLF  ++IL+FCF++ D++KNGYI +E++ +++ +LYHI P    SGNT+ A +      D K+++ EF   +  FP+L +PAFR+Q  M+   +G++WW++KK+ L +E  +R  +E+     E  RL  +R+ RI++KMG L+Y  CP  R  +  +FP     V D + EK    AE   ++A  R    + RE    NPET+ + +Y +K  T+ E  +   ++  P+         +A  R LR   RRAK
Sbjct:    2 GASMTVPNPDHRTLKVMEFINIGVKELAVFWRHFREGDKEMLGVIAIDQFYLLFHEKRSIFGDGIFDLCDIHHTEELDFGEYLVAVITYCLFEPQEILRFCFYIFDRDKNGYIMKEELELMLRVLYHIVPPNDFSGNTRNALELLDFNDDEKVDWQEFNRFHVLFPALFYPAFRIQQTMITQTMGQRWWDKKKRYLHEEKVRRDMIEQLAARKEHARLLKLREKRIRKKMGLLRYMFCPAQRAAFRKLFP-----VDDAQAEKTLSEAELQVQKAKQREVERRLRELNAKNPETSAWGDY-QKRKTRMEYAQQSADRTHPR--------RSANERALRAATRRAK 332          
BLAST of mRNA_H-elongata_contig11986.1534.1 vs. uniprot
Match: A0A2R5GWK3_9STRA (Calmodulin-like protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GWK3_9STRA)

HSP 1 Score: 186 bits (472), Expect = 3.100e-52
Identity = 99/233 (42.49%), Postives = 142/233 (60.94%), Query Frame = 1
Query:   25 LPAPDERLLKIIKILTLSNSELAKIFEIFNNHAQR--GCLTLGNMYKLLGERKSIFGDSLFELIGVHDFQKLAFSEWLHAITTFCLFGEEDILKFCFFVLDQEKNGYIEREDIRMLISMLYHIDPIKGPSGNTKVAFDKFSIQQDGKIEFWEFEILNQAFPSLVFPAFRLQVKMMQAILGEQWWNRKKQLLQDETDKRRCLEEEGRMAEAKRLEAMRQLRIKRKMGKLKYYCC 717
            +P PD+RL K I +L LS  E+ K + IF  + +   G + +   Y+L+ E +++FGDSLFEL+ +     L FSE++  I T+ LF   DILKFCFFV D++KNGYI+ +++  L+ ML+       P+ N + A   F    DGKI+F EF+ +N  FP L+ PAFR+Q  MM   LGEQWWN KK +LQ+E +    LEE  R+ E +R    +Q +++ KMG   YY C
Sbjct:    5 IPVPDDRLQKTIDMLKLSKKEINKFWRIFQKYDRDHGGTIDVEEFYRLIEEERTVFGDSLFELVDIDCSGTLDFSEFVQTIATYALFARVDILKFCFFVFDKDKNGYIDSDELHALVEMLHG----NNPTSNCRTALANFDTNSDGKIDFEEFQAMNVRFPQLLHPAFRMQQNMMINTLGEQWWNGKKLMLQEERNADNALEERLRLKELQRQHRNQQRQVRHKMGFFGYYFC 233          
BLAST of mRNA_H-elongata_contig11986.1534.1 vs. uniprot
Match: A0A024TD15_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TD15_9STRA)

HSP 1 Score: 168 bits (426), Expect = 8.070e-46
Identity = 100/256 (39.06%), Postives = 145/256 (56.64%), Query Frame = 1
Query:   25 LPAPDERLLKIIKILTLSNSELAKIFEIFNN---------------HAQRGCLTLGNMYKLLGERKSIFGDSLFELIGVHDFQKLAFSEWLHAITTFCLFGEEDILKFCFFVLDQEKNGYIEREDIRMLISMLYHIDPIKGPSGNTKVAFDKFSIQQDGKIEFWEFEILNQAFPSLVFPAFRLQVKMMQAILGEQWWNRKKQLLQDETDKRRCLEEEG---RMAEAKRLEAMRQLRIKRKMGKLKYYCCPCGRVMY 738
            +PAPDER+LK I+ L L+ S+L  +++ F+N               H+  G +     ++   E ++  GD++F LI + +  +L FSE++ A+  FCL   +++LKFCFFV DQ+KNG IE  ++  L+ ML H D     + N   A DKF    DGK++F EF+ILNQ FP+L++P +RLQ  M    +GE WWN++  LL    D    L E G    +A AK  E  R+ R  + MG L+YY CPC R  Y
Sbjct:    7 IPAPDERMLKTIEKLQLNESDLRTLYKRFSNSSPRFQRGLLMRSLDHSNSGSINRTEFFRSFREERTAVGDAVFALIDIDNSGQLDFSEYVEALGAFCLLNTDEVLKFCFFVFDQDKNGTIEGMELDALLEML-HAD---NATSNMAAAMDKFDFNGDGKVDFREFQILNQQFPTLLYPVYRLQQSMKVHSMGEAWWNKRATLLSQLKD----LRENGDATALAAAKAKEQRRKTR--QNMGCLRYYLCPCRRSAY 252          
BLAST of mRNA_H-elongata_contig11986.1534.1 vs. uniprot
Match: W4FPF5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FPF5_9STRA)

HSP 1 Score: 168 bits (425), Expect = 9.720e-46
Identity = 97/246 (39.43%), Postives = 144/246 (58.54%), Query Frame = 1
Query:   25 LPAPDERLLKIIKILTLSNSELAKIFEIFNNH-------AQRGCLTLGNMYKLLGERKSIFGDSLFELIGVHDFQKLAFSEWLHAITTFCLFGEEDILKFCFFVLDQEKNGYIEREDIRMLISMLYHIDPIKGPSGNTKVAFDKFSIQQDGKIEFWEFEILNQAFPSLVFPAFRLQVKMMQAILGEQWWNRKKQLLQDETDKRRCLEEEGRMAEAKRLEAM-RQLRIKRKMGKLKYYCCPCGRVMY 738
            +PAPDER+LK I+ L L+ S+L  +++ F+         +  G +     ++   E ++  GD++F LI + +  +L FSE++ A+  FCL   ++ILKFCFFV DQ+KNG IE  ++  L+ ML H D     + N   A +KF    DGK++F EF+ILNQ FP+L++P +RLQ  M    +GE WWNR+  LL D  D    L+E G  A     +A  R+ + ++ MG L+YY CPC R  Y
Sbjct:    7 IPAPDERMLKTIEKLQLNESDLRALYKRFSKSDKEVRRTSNSGSIDRTEFFRSFNEERTAVGDAVFALIDIDNSGQLDFSEYVEALGAFCLLNTDEILKFCFFVFDQDKNGTIEGMELDALLEML-HSD---SATSNMAAAMEKFDFNGDGKVDFKEFQILNQQFPTLLYPVYRLQQSMKVHSMGESWWNRRATLLNDLKD----LKENGDAAAIAASKAKDRRRKTRQNMGCLRYYLCPCRRSAY 244          
BLAST of mRNA_H-elongata_contig11986.1534.1 vs. uniprot
Match: A0A7S2D7S8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D7S8_9STRA)

HSP 1 Score: 164 bits (415), Expect = 1.870e-44
Identity = 89/264 (33.71%), Postives = 156/264 (59.09%), Query Frame = 1
Query:   28 PAPDERLLKIIKILTLSNSELAKIFEIFN--NHAQRGCLTLGNMY-KLLGERKSIFGDSLFELIGVHDFQKLAFSEWLHAITTFCLFGEEDILKFCFFVLDQEKNGYIEREDIRMLISMLYHIDPIKGPSGNTKVAFDKFSIQQDGKIEFWEFEILNQAFPSLVFPAFRLQVKMMQAILGEQWWNRKKQLLQDETDKRRCLEEEGRMAEAKRLEAMRQLRIKRKMGKLKYYCCPCGRVMYDNMFP----KAIVLVVDPEQEKAE 798
            P  D+R+ +  +++ L+ S++   + +F   ++ + G +   + + K++ E +++FG+++FELI   D  KL F E+L  + T+C F E +IL+FCFF+ D+EKNGYI++++++  + +L++   +     N + AF     Q DGK +F EF+ LN+ FP++++PAFR+Q  MM  I+GE WW +KK +L  + + +R         E    E  RQ +I+  MG +KYY  P  R M+D  +P    + + L+   E+EK E
Sbjct:    6 PVADDRVQRAAEMVKLNVSDIKGFWNVFRKCDYDRIGIVATEDFFTKIVQEGRNMFGNAIFELIDAEDPDKLEFGEFLQGVVTYCCFDELEILQFCFFIFDREKNGYIDQDELKFFVDVLHNEQQV----ANVRTAFQSIKFQTDGKFDFPEFQKLNKDFPTVLYPAFRMQQNMMLNIMGEDWWRQKKLMLTLDKEDQRSAHARMMRREFNNRERTRQKQIRHDMGPVKYYLQPSKRSMFDEKYPPMSMEELELIKAKEREKLE 265          
BLAST of mRNA_H-elongata_contig11986.1534.1 vs. uniprot
Match: A0A8J2S6B5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S6B5_9STRA)

HSP 1 Score: 154 bits (390), Expect = 5.500e-41
Identity = 95/271 (35.06%), Postives = 158/271 (58.30%), Query Frame = 1
Query:   28 PAPDERLLKIIKILTLSNSELAKIFEIFNNH--AQRGCLTLGNMY-KLLGERKSIFGDSLFELIGVHDFQKLAFSEWLHAITTFCLFGEEDILKFCFFVLDQEKNGYIEREDIRMLISMLYHIDPIKGPSGNTKVAFDKFSIQQDGKIEFWEFEILNQAFPSLVFPAFRLQVKMMQAILGEQWWNRKKQLL--QDETDKRRCLEEEGR-MAEAKRLEAMRQLRIKRKMGKLKYYCCPCGRVMYDNMFPKAIVLVVDPEQEKAERLRKEALA 822
            P  D+R+ K ++   L   ++  ++ +F  H   +R  + + + Y K++   ++IF D LF+LI   D + + F E++ A+TT+C F   ++LKFCFFV D++K G+I +E++R+ +  ++  +     S N + A D    ++DGK +F EF+ ++  +PS++FPAFRLQ  MMQA+ GEQ+W  KK  L  Q E +++R    E R  AEA +    R+ +++R MG +KYY  P  R  Y  ++P      V  EQE+A   R++ LA
Sbjct:   14 PTADDRIAKAMQTFNLKEKDIRVLWHMFKKHDKERRSIIAISDFYDKIVFVPRTIFCDGLFDLIEAADSESIDFGEFVAAVTTYCFFEIPEVLKFCFFVFDRDKKGFITQEEMRLFVDAMHGNEM----STNVEFALDNLKYRKDGKFDFEEFKGMHHLYPSVLFPAFRLQNAMMQAMGGEQFWESKKLELSMQKEDERKREANREAREKAEAYKY---REDQVRRHMGSIKYYLMPKNRAKYYEVYPLPKKYRVMEEQERARAKREKQLA 277          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11986.1534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1H5_9PHAE5.760e-14057.58EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D7G2J3_ECTSI6.740e-13471.32EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835ZCW1_9STRA2.890e-7037.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2C3E2_9STRA2.340e-6739.07Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6S8V9R4_9STRA5.990e-5734.78Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A2R5GWK3_9STRA3.100e-5242.49Calmodulin-like protein n=1 Tax=Hondaea fermentalg... [more]
A0A024TD15_9STRA8.070e-4639.06Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
W4FPF5_9STRA9.720e-4639.43Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A7S2D7S8_9STRA1.870e-4433.71Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A8J2S6B5_9STRA5.500e-4135.06Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11986contigH-elongata_contig11986:5267..7552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score402.1
Seed ortholog evalue2.7e-109
Seed eggNOG ortholog2880.D7G2J3
EggNOG OGs2DCZ5@1,2SCZN@2759
Ec32 ortholog descriptionEF-hand domain protein
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-12_001730.1
Exons5
Model size1077
Cds size1077
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11986.1534.1prot_H-elongata_contig11986.1534.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11986 5267..7552 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929702.4147458-CDS-H-elongata_contig11986:5266..55331622929702.4147458-CDS-H-elongata_contig11986:5266..5533Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11986 5267..5533 -
1691679124.8516352-CDS-H-elongata_contig11986:5266..55331691679124.8516352-CDS-H-elongata_contig11986:5266..5533Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11986 5267..5533 -
1622929702.4295778-CDS-H-elongata_contig11986:5904..61831622929702.4295778-CDS-H-elongata_contig11986:5904..6183Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11986 5905..6183 -
1691679124.871828-CDS-H-elongata_contig11986:5904..61831691679124.871828-CDS-H-elongata_contig11986:5904..6183Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11986 5905..6183 -
1622929702.4455805-CDS-H-elongata_contig11986:6541..68611622929702.4455805-CDS-H-elongata_contig11986:6541..6861Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11986 6542..6861 -
1691679124.8795598-CDS-H-elongata_contig11986:6541..68611691679124.8795598-CDS-H-elongata_contig11986:6541..6861Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11986 6542..6861 -
1622929702.46817-CDS-H-elongata_contig11986:7167..72821622929702.46817-CDS-H-elongata_contig11986:7167..7282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11986 7168..7282 -
1691679124.8866994-CDS-H-elongata_contig11986:7167..72821691679124.8866994-CDS-H-elongata_contig11986:7167..7282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11986 7168..7282 -
1622929702.489166-CDS-H-elongata_contig11986:7456..75521622929702.489166-CDS-H-elongata_contig11986:7456..7552Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11986 7457..7552 -
1691679124.8960679-CDS-H-elongata_contig11986:7456..75521691679124.8960679-CDS-H-elongata_contig11986:7456..7552Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11986 7457..7552 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11986.1534.1

>prot_H-elongata_contig11986.1534.1 ID=prot_H-elongata_contig11986.1534.1|Name=mRNA_H-elongata_contig11986.1534.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=359bp
MGSGGSILLPAPDERLLKIIKILTLSNSELAKIFEIFNNHAQRGCLTLGN
MYKLLGERKSIFGDSLFELIGVHDFQKLAFSEWLHAITTFCLFGEEDILK
FCFFVLDQEKNGYIEREDIRMLISMLYHIDPIKGPSGNTKVAFDKFSIQQ
DGKIEFWEFEILNQAFPSLVFPAFRLQVKMMQAILGEQWWNRKKQLLQDE
TDKRRCLEEEGRMAEAKRLEAMRQLRIKRKMGKLKYYCCPCGRVMYDNMF
PKAIVLVVDPEQEKAERLRKEALARAALEKEREACLMNPETAEYKNYREK
MDTKREKQRDQTNKRLPQPRRPVKRENTAYNRRLRVENRRAKDGRRPVVE
RGLGGVVL*
back to top

mRNA from alignment at H-elongata_contig11986:5267..7552-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11986.1534.1 ID=mRNA_H-elongata_contig11986.1534.1|Name=mRNA_H-elongata_contig11986.1534.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2286bp|location=Sequence derived from alignment at H-elongata_contig11986:5267..7552- (Himanthalia elongata Himel1 dioecious)
ATGGGATCGGGCGGCTCGATTCTCCTGCCCGCCCCAGACGAACGTTTGCT CAAAATTATCAAGATTCTTACCTTGAGCAATTCGGAACTCGCAAAGGTGA CGTGTCGAGTATTTTTATGGGCCTGGTGAAAGCTGCCCCCTTTATATATC CAGTTCGTAGCAGCTTAACAACGTGGGGTTGAATGATCCATTATGGCCGG TTTCGGTGCACTTGACCACTAATTGAAAATCAGTTCTCGCCCGATCTCTA TGTTTGACTGCACTGTAAAGATATTTGAAATATTCAACAACCATGCTCAG CGCGGTTGTCTTACACTTGGGAATATGTACAAGTTACTCGGCGAAAGGAA ATCAATCTTCGGAGACAGCTTGTTTGAGCTCATTGGTGAGCCGTGCTTAG CTTCTCAGAATGAATCACGTAAATTTATGTATATGCTCTTACTAGCCCAG CCAATGCTCTGCTAACAACGTGTCAGGAGCGATCGGATGACATGTGCCAA GCAGCATCGTTTTCTCATTGTCCACAACAATTCGTCGTGACTTTTTCCAG ATGGGAGCTCAGTTTTATATTCGAGCTCAAGATCTCGTTCACAAAAGCCT GTGATACATTGGCCTGACGCACACGTTTTACTTTAGCTGGTGCCTTTCCC TTTCTGTCTGCTTGGTAATTATGGTAACTTCACCACGAAAGGTGTTCATG ATTTTCAGAAACTCGCGTTCTCCGAGTGGCTCCATGCCATCACGACATTC TGCCTCTTCGGAGAGGAAGACATCCTGAAATTCTGCTTTTTCGTTCTCGA TCAAGAAAAAAATGGCTACATTGAGAGGGAAGATATACGGATGCTCATCA GCATGCTTTACCACATTGATCCCATCAAGGGGCCTTCCGGAAACACAAAG GTTGCTTTTGACAAATTCTCAATCCAGCAGGACGGAAAGATAGAGTTCTG GGAATTCGAGATCTTGAACCAGGCGTTTCCTTCCCTGGTTTTCCCGGCAT TCCGTCTGCAGGTGGGCAAGCCATCGAACTCTACGGCAGCAATGAAAAAT CGAGTGTGGAGTCAATCTGGCAACAACGTCGTTTCGTCGACGATAGAAGG CGCTGACGCTGTCGGAAAGTACAAATTTGCGGTTATTTGACTCGGTACCA AGACTCGCTTCCGTGCACCATCATTTTTGGCCCTCTTTTATAACCTTTAA TGGGAAATCGGTAAATTCGAAGCCTGGAAGCTGGTGTATCACGAATCAAT GCTGGTCTAACAACAGGCAACAGGTGCTCTAGCTAGTGGTTAATGCAAAG AGATGGCCAGGCAAATTATGGACGATCGCTACTTTGCCAGTGAAGCGCCT GCGTGGTATGTGTCCCTAGGTCAAGATGATGCAAGCTATCCTCGGCGAGC AGTGGTGGAACCGTAAAAAACAACTACTCCAAGATGAGACCGACAAGAGG CGGTGTCTGGAGGAAGAGGGTCGCATGGCCGAAGCCAAACGACTTGAGGC CATGCGGCAGCTGCGCATCAAGAGAAAAATGGGCAAACTAAAGTATTATT GCTGTCCGTGCGGGCGGGTTATGTATGACAACATGTTTCCTAAGGCCATC GTTCTCGTCGTGGATCCGGAACAAGAAAAAGCCGAGCGGTTACGAAAGGT GAGGAAAACTGTTAATATACCAGTTACAGTATTAACTTTTCGAAATCCTT TTCCCCAGCCCCGTACGCAAAATCGCCACATGCCGTAATGTTTTAGGTAC TGTACTGTAGACGCAGAATTGAACTCGGGATGTTCCTCATCGGGGGCGAG ATAATACGTCAAATTATTGTTCACATGCGCACTGTTCGTACATATTAGTA TTATTTAGTATGTATATCACACTACAAGCAAAGCAAACCCAGACGCGAAG CAACCCCGCTCCCCGGGGTATATCGGATATCGCCTGGGTAAAAGCGGAGT TTAGCCAGTGGGTTTGGCTACGACGTACCTTACGCTCACGACGGCGTTTG TTTCGAACTCGTGATTCAGGAGGCCTTGGCGAGGGCGGCGCTCGAGAAAG AGAGAGAAGCATGTTTAATGAATCCGGAGACAGCAGAGTACAAAAACTAC CGAGAAAAAATGGATACTAAGAGAGAGAAACAACGAGACCAGACCAACAA AAGGCTCCCACAACCTCGTCGGCCGGTTAAGAGAGAAAACACTGCCTATA ATAGAAGATTACGGGTTGAGAATCGCAGGGCGAAGGATGGGAGGAGGCCT GTTGTGGAGAGAGGCTTAGGAGGTGTCGTGCTTTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig11986:5267..7552-

>mRNA_H-elongata_contig11986.1534.1 ID=mRNA_H-elongata_contig11986.1534.1|Name=mRNA_H-elongata_contig11986.1534.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2154bp|location=Sequence derived from alignment at H-elongata_contig11986:5267..7552- (Himanthalia elongata Himel1 dioecious)
ATGGGATCGGGCGGCTCGATTCTCCTGCCCGCCCCAGACGAACGTTTGCT
CAAAATTATCAAGATTCTTACCTTGAGCAATTCGGAACTCGCAAAGATGG
GATCGGGCGGCTCGATTCTCCTGCCCGCCCCAGACGAACGTTTGCTCAAA
ATTATCAAGATTCTTACCTTGAGCAATTCGGAACTCGCAAAGATATTTGA
AATATTCAACAACCATGCTCAGCGCGGTTGTCTTACACTTGGGAATATGT
ACAAGTTACTCGGCGAAAGGAAATCAATCTTCGGAGACAGCTTGTTTGAG
CTCATTGATATTTGAAATATTCAACAACCATGCTCAGCGCGGTTGTCTTA
CACTTGGGAATATGTACAAGTTACTCGGCGAAAGGAAATCAATCTTCGGA
GACAGCTTGTTTGAGCTCATTGGTGTTCATGATTTTCAGAAACTCGCGTT
CTCCGAGTGGCTCCATGCCATCACGACATTCTGCCTCTTCGGAGAGGAAG
ACATCCTGAAATTCTGCTTTTTCGTTCTCGATCAAGAAAAAAATGGCTAC
ATTGAGAGGGAAGATATACGGATGCTCATCAGCATGCTTTACCACATTGA
TCCCATCAAGGGGCCTTCCGGAAACACAAAGGTTGCTTTTGACAAATTCT
CAATCCAGCAGGACGGAAAGATAGAGTTCTGGGAATTCGAGATCTTGAAC
CAGGCGTTTCCTTCCCTGGTTTTCCCGGCATTCCGTCTGCAGGTGTTCAT
GATTTTCAGAAACTCGCGTTCTCCGAGTGGCTCCATGCCATCACGACATT
CTGCCTCTTCGGAGAGGAAGACATCCTGAAATTCTGCTTTTTCGTTCTCG
ATCAAGAAAAAAATGGCTACATTGAGAGGGAAGATATACGGATGCTCATC
AGCATGCTTTACCACATTGATCCCATCAAGGGGCCTTCCGGAAACACAAA
GGTTGCTTTTGACAAATTCTCAATCCAGCAGGACGGAAAGATAGAGTTCT
GGGAATTCGAGATCTTGAACCAGGCGTTTCCTTCCCTGGTTTTCCCGGCA
TTCCGTCTGCAGGTCAAGATGATGCAAGCTATCCTCGGCGAGCAGTGGTG
GAACCGTAAAAAACAACTACTCCAAGATGAGACCGACAAGAGGCGGTGTC
TGGAGGAAGAGGGTCGCATGGCCGAAGCCAAACGACTTGAGGCCATGCGG
CAGCTGCGCATCAAGAGAAAAATGGGCAAACTAAAGTATTATTGCTGTCC
GTGCGGGCGGGTTATGTATGACAACATGTTTCCTAAGGCCATCGTTCTCG
TCGTGGATCCGGAACAAGAAAAAGCCGAGCGGTTACGAAAGGTCAAGATG
ATGCAAGCTATCCTCGGCGAGCAGTGGTGGAACCGTAAAAAACAACTACT
CCAAGATGAGACCGACAAGAGGCGGTGTCTGGAGGAAGAGGGTCGCATGG
CCGAAGCCAAACGACTTGAGGCCATGCGGCAGCTGCGCATCAAGAGAAAA
ATGGGCAAACTAAAGTATTATTGCTGTCCGTGCGGGCGGGTTATGTATGA
CAACATGTTTCCTAAGGCCATCGTTCTCGTCGTGGATCCGGAACAAGAAA
AAGCCGAGCGGTTACGAAAGGAGGCCTTGGCGAGGGCGGCGCTCGAGAAA
GAGAGAGAAGCATGTTTAATGAATCCGGAGACAGCAGAGTACAAAAACTA
CCGAGAAAAAATGGATACTAAGAGAGAGAAACAACGAGACCAGACCAACA
AAAGGCTCCCACAACCTCGTCGGCCGGTTAAGAGAGAAAACACTGCCTAT
AATAGAAGATTACGGGTTGAGAATCGCAGGGCGAAGGATGGGAGGAGGCC
TGTTGTGGAGAGAGGCTTAGGAGGTGTCGTGCTTTAAGAGGCCTTGGCGA
GGGCGGCGCTCGAGAAAGAGAGAGAAGCATGTTTAATGAATCCGGAGACA
GCAGAGTACAAAAACTACCGAGAAAAAATGGATACTAAGAGAGAGAAACA
ACGAGACCAGACCAACAAAAGGCTCCCACAACCTCGTCGGCCGGTTAAGA
GAGAAAACACTGCCTATAATAGAAGATTACGGGTTGAGAATCGCAGGGCG
AAGGATGGGAGGAGGCCTGTTGTGGAGAGAGGCTTAGGAGGTGTCGTGCT
TTAA
back to top