mRNA_H-elongata_contig119849.1531.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119849.1531.1
Unique NamemRNA_H-elongata_contig119849.1531.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig119849.1531.1 vs. uniprot
Match: A0A6H5L4N8_9PHAE (Tr-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4N8_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 4.470e-31
Identity = 61/70 (87.14%), Postives = 65/70 (92.86%), Query Frame = 1 
Query:    1 LAREKIAREDRQRDTLRSPIVCIMGHVDTGKTKLLDKIRQTSVQEGEAGGITQQIGATFFAKDTLCEKVQ 210
            L REK ARE R  D+LRSPIVCIMGHVDTGKTKLLDKIRQTSVQEGEAGGITQQIGATFF+K+TLCEKV+
Sbjct:  462 LEREKAAREARNADSLRSPIVCIMGHVDTGKTKLLDKIRQTSVQEGEAGGITQQIGATFFSKETLCEKVE 531
[Close]
BLAST of mRNA_H-elongata_contig119849.1531.1 vs. uniprot
Match: A0A0J1B300_9TREE (Eukaryotic translation initiation factor 5B n=1 Tax=Cutaneotrichosporon oleaginosum TaxID=879819 RepID=A0A0J1B300_9TREE)

HSP 1 Score: 105 bits (262), Expect = 9.990e-25
Identity = 52/73 (71.23%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:    4 AREKIAREDRQRDTLRSPIVCIMGHVDTGKTKLLDKIRQTSVQEGEAGGITQQIGATFFAKDTLCEKVQCCRR 222
            AR K A+  + +  LRSPI CI+GHVDTGKTKLLDKIRQTSVQEGEAGGITQQIGATFF K+ L EK Q   +
Sbjct:  602 ARRKAAQAQQSKTDLRSPICCILGHVDTGKTKLLDKIRQTSVQEGEAGGITQQIGATFFPKEALVEKTQAVNK 674
[Close]
BLAST of mRNA_H-elongata_contig119849.1531.1 vs. uniprot
Match: A0A7S3ZUV1_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZUV1_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.850e-24
Identity = 53/70 (75.71%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:    1 LAREKIAREDRQRDTLRSPIVCIMGHVDTGKTKLLDKIRQTSVQEGEAGGITQQIGATFFAKDTLCEKVQ 210
            LAREK   +DR    LRSPI CIMGHVDTGKTKLLDKIRQT+VQ+GEAGGITQQIGATFF   TL EK++
Sbjct:  337 LAREKRRDDDRSESRLRSPICCIMGHVDTGKTKLLDKIRQTNVQDGEAGGITQQIGATFFDDATLKEKIR 406
[Close]
BLAST of mRNA_H-elongata_contig119849.1531.1 vs. uniprot
Match: A0A7S3JXB3_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JXB3_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.460e-24
Identity = 53/73 (72.60%), Postives = 59/73 (80.82%), Query Frame = 1 
Query:    1 LAREKIAREDRQRDTLRSPIVCIMGHVDTGKTKLLDKIRQTSVQEGEAGGITQQIGATFFAKDTLCEKVQCCR 219
            L REK   E R  D LR+PI CIMGHVDTGKTKLLDKIRQT+VQ+GEAGGITQQIGAT+F K TL EK++  R
Sbjct:  359 LEREKKNEEARSLDRLRAPICCIMGHVDTGKTKLLDKIRQTNVQDGEAGGITQQIGATYFDKATLVEKIKPVR 431
[Close]
BLAST of mRNA_H-elongata_contig119849.1531.1 vs. uniprot
Match: A0A0L0T397_ALLM3 (Eukaryotic translation initiation factor 5B n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0T397_ALLM3)

HSP 1 Score: 103 bits (258), Expect = 3.460e-24
Identity = 51/75 (68.00%), Postives = 60/75 (80.00%), Query Frame = 1 
Query:    4 AREKIAREDRQRDTLRSPIVCIMGHVDTGKTKLLDKIRQTSVQEGEAGGITQQIGATFFAKDTLCEKVQCCRRVQ 228
            AR+K A   R +D LRSPI CI+GHVDTGKTKLLDKIRQT+VQEGEAGGITQQIGAT+F  D + +KV   + V+
Sbjct:  545 ARQKAAMAARSKDNLRSPICCILGHVDTGKTKLLDKIRQTNVQEGEAGGITQQIGATYFPVDAIEKKVSVMKNVE 619
[Close]
BLAST of mRNA_H-elongata_contig119849.1531.1 vs. uniprot
Match: K1VJM2_TRIAC (Eukaryotic translation initiation factor 5B n=1 Tax=Trichosporon asahii var. asahii (strain CBS 8904) TaxID=1220162 RepID=K1VJM2_TRIAC)

HSP 1 Score: 103 bits (258), Expect = 3.470e-24
Identity = 52/69 (75.36%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:    4 AREKIAREDRQRDTLRSPIVCIMGHVDTGKTKLLDKIRQTSVQEGEAGGITQQIGATFFAKDTLCEKVQ 210
            AR K A   + +  LRSPI CI+GHVDTGKTKLLDKIRQTSVQEGEAGGITQQIGATFF K+ L EK Q
Sbjct:  602 ARRKAAEAAQDKTDLRSPICCILGHVDTGKTKLLDKIRQTSVQEGEAGGITQQIGATFFPKEALVEKTQ 670
[Close]
BLAST of mRNA_H-elongata_contig119849.1531.1 vs. uniprot
Match: J6ETL0_TRIAS (Eukaryotic translation initiation factor 5B n=1 Tax=Trichosporon asahii var. asahii (strain ATCC 90039 / CBS 2479 / JCM 2466 / KCTC 7840 / NBRC 103889/ NCYC 2677 / UAMH 7654) TaxID=1186058 RepID=J6ETL0_TRIAS)

HSP 1 Score: 103 bits (258), Expect = 3.490e-24
Identity = 52/69 (75.36%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:    4 AREKIAREDRQRDTLRSPIVCIMGHVDTGKTKLLDKIRQTSVQEGEAGGITQQIGATFFAKDTLCEKVQ 210
            AR K A   + +  LRSPI CI+GHVDTGKTKLLDKIRQTSVQEGEAGGITQQIGATFF K+ L EK Q
Sbjct:  611 ARRKAAEAAQDKTDLRSPICCILGHVDTGKTKLLDKIRQTSVQEGEAGGITQQIGATFFPKEALVEKTQ 679
[Close]
BLAST of mRNA_H-elongata_contig119849.1531.1 vs. uniprot
Match: A0A836CHS5_9STRA (Tr-type G domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHS5_9STRA)

HSP 1 Score: 103 bits (257), Expect = 4.720e-24
Identity = 50/55 (90.91%), Postives = 54/55 (98.18%), Query Frame = 1 
Query:   43 TLRSPIVCIMGHVDTGKTKLLDKIRQTSVQEGEAGGITQQIGATFFAKDTLCEKV 207
            +LRSPIVCIMGHVDTGKTKLLDKIRQT+VQEGEAGGITQQIGATFFAK+TL +KV
Sbjct:  423 SLRSPIVCIMGHVDTGKTKLLDKIRQTNVQEGEAGGITQQIGATFFAKETLKDKV 477
[Close]
BLAST of mRNA_H-elongata_contig119849.1531.1 vs. uniprot
Match: A0A427XWH0_9TREE (Eukaryotic translation initiation factor 5B n=1 Tax=Apiotrichum porosum TaxID=105984 RepID=A0A427XWH0_9TREE)

HSP 1 Score: 103 bits (257), Expect = 4.740e-24
Identity = 51/72 (70.83%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:    7 REKIAREDRQRDTLRSPIVCIMGHVDTGKTKLLDKIRQTSVQEGEAGGITQQIGATFFAKDTLCEKVQCCRR 222
            R K A  ++ +  LRSPI CI+GHVDTGKTKLLDKIRQTSVQEGEAGGITQQIGATFF ++ L EK Q   R
Sbjct:  599 RRKAAEANQDKTDLRSPICCILGHVDTGKTKLLDKIRQTSVQEGEAGGITQQIGATFFPREALVEKTQVVNR 670
[Close]
BLAST of mRNA_H-elongata_contig119849.1531.1 vs. uniprot
Match: U6LJX5_9EIME (Translation initiation factor IF-2, putative n=1 Tax=Eimeria brunetti TaxID=51314 RepID=U6LJX5_9EIME)

HSP 1 Score: 103 bits (256), Expect = 6.360e-24
Identity = 51/75 (68.00%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:    1 LAREKIAREDRQRDTLRSPIVCIMGHVDTGKTKLLDKIRQTSVQEGEAGGITQQIGATFFAKDTLCEKVQCCRRV 225
            +A+ K   + +Q+ +LRSPI CIMGHVDTGKTKLLDK+R+T+VQ GEAGGITQQIGATFF K+ L E  QCC+RV
Sbjct:  622 VAKLKTLNKSKQQPSLRSPICCIMGHVDTGKTKLLDKLRRTNVQLGEAGGITQQIGATFFPKEALLE--QCCKRV 694
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119849.1531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4N8_9PHAE4.470e-3187.14Tr-type G domain-containing protein n=2 Tax=Ectoca... [more]
A0A0J1B300_9TREE9.990e-2571.23Eukaryotic translation initiation factor 5B n=1 Ta... [more]
A0A7S3ZUV1_9STRA1.850e-2475.71Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S3JXB3_9STRA3.460e-2472.60Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A0L0T397_ALLM33.460e-2468.00Eukaryotic translation initiation factor 5B n=1 Ta... [more]
K1VJM2_TRIAC3.470e-2475.36Eukaryotic translation initiation factor 5B n=1 Ta... [more]
J6ETL0_TRIAS3.490e-2475.36Eukaryotic translation initiation factor 5B n=1 Ta... [more]
A0A836CHS5_9STRA4.720e-2490.91Tr-type G domain-containing protein n=1 Tax=Tribon... [more]
A0A427XWH0_9TREE4.740e-2470.83Eukaryotic translation initiation factor 5B n=1 Ta... [more]
U6LJX5_9EIME6.360e-2468.00Translation initiation factor IF-2, putative n=1 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119849contigH-elongata_contig119849:662..1721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.8
Seed ortholog evalue1.8e-26
Seed eggNOG ortholog2880.D8LKY1
Preferred nameFUN12
KEGG koko:K03243,ko:K12834
KEGG Pathwayko03013,ko03040,map03013,map03040
KEGG ModuleM00352
GOsGO:0000166,GO:0000462,GO:0001732,GO:0001882,GO:0001883,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010608,GO:0015935,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019222,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030490,GO:0030684,GO:0030687,GO:0031323,GO:0031326,GO:0031369,GO:0032268,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033290,GO:0034248,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0035770,GO:0036094,GO:0036464,GO:0042254,GO:0042255,GO:0042274,GO:0043021,GO:0043022,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0070993,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG0532@1,KOG1144@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03012,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929702.1350195-CDS-H-elongata_contig119849:661..8041622929702.1350195-CDS-H-elongata_contig119849:661..804Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119849 662..804 -
1691679124.7196467-CDS-H-elongata_contig119849:661..8041691679124.7196467-CDS-H-elongata_contig119849:661..804Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119849 662..804 -
1622929702.1484678-CDS-H-elongata_contig119849:1633..17211622929702.1484678-CDS-H-elongata_contig119849:1633..1721Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119849 1634..1721 -
1691679124.7318652-CDS-H-elongata_contig119849:1633..17211691679124.7318652-CDS-H-elongata_contig119849:1633..1721Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119849 1634..1721 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119849.1531.1prot_H-elongata_contig119849.1531.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119849 662..1721 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119849.1531.1

>prot_H-elongata_contig119849.1531.1 ID=prot_H-elongata_contig119849.1531.1|Name=mRNA_H-elongata_contig119849.1531.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
LAREKIAREDRQRDTLRSPIVCIMGHVDTGKTKLLDKIRQTSVQEGEAGG
ITQQIGATFFAKDTLCEKVQCCRRVQ*
back to top

mRNA from alignment at H-elongata_contig119849:662..1721-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119849.1531.1 ID=mRNA_H-elongata_contig119849.1531.1|Name=mRNA_H-elongata_contig119849.1531.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1060bp|location=Sequence derived from alignment at H-elongata_contig119849:662..1721- (Himanthalia elongata Himel1 dioecious)
TTAGCGCGGGAGAAAATCGCGCGGGAAGATCGTCAGCGGGACACCCTGCG
GTCTCCAATCGTTTGCATCATGGGCCACGTCGATACGGGTAAGCGAGCGT
GGCCGTATTGGTATTGTTAAGCAAAGGCGCTAAAGATAACCCGCGAACCT
GGGGGCGATTTATTTAACCGCATGGGCATGGTTTGTTTTGTCTCCCCTAG
GAAAGCAACGTTATCGAGTGAGCGTCGAGCTGAATTACTTTCGTAGCAAC
CGCTTGGCTATTGTCCAGCCGTGGAGAGGTTTGATATTGTAGTGATTTAG
AGGCGTGTACTTTTCGTTACGTCGGCTTCTGCGCTCAAGAGCATGTGGGT
TAGTGTATGATACGTGATACAGTAGTTCACAAGTACGATTCGGGATTGGT
GCACGATACGTGGTGAACGATACGTGGTCGTGGGTGCCATTGGTAGGATT
ATTTTTTAGCCATCCATTATTTATTCTAGACGTCAGATTTGTGGACGCAG
CAGCCGGGGTAGGGTCGCACAGGATTTCTCCACCTTTACCTGCGGTGCTT
GCCTTTATCATTATTATCTTTATCATCATTATTATCATTAGTTTTTTATT
GCGAGAAGGATTTAGCCATTCCTTTCCCTCGTCGACCGTGAAGTTGAAAA
TTGTATACCCACGAAATGAATGTTCTCCACCCTTTGGGCATGATGTGAGA
AAAGAAAATCACAGTTCGTGTGACTGCACCGAGGTTCGAACTTACGTCCC
GACGTGAGGAGGCTTCGAGGTTATCAACTGAACCACCGGGGCATTTCCAT
TGGACCCGGTGATTTGTGGTCGTTAATGCTTGACGTGTACGTAGCATGAT
CCGTTTACACGTATGATGAAAGTACACGTAGGATATGTTTACACGTATGA
TACGTTGACGCTAACAGGCAAGACGAAGCTGCTTGACAAGATTCGCCAAA
CAAGCGTTCAGGAAGGGGAGGCCGGAGGAATCACGCAGCAGATCGGTGCC
ACCTTTTTCGCCAAGGACACACTGTGCGAAAAGGTACAGTGCTGCAGAAG
AGTACAGTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig119849:662..1721-

>mRNA_H-elongata_contig119849.1531.1 ID=mRNA_H-elongata_contig119849.1531.1|Name=mRNA_H-elongata_contig119849.1531.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig119849:662..1721- (Himanthalia elongata Himel1 dioecious)
TTAGCGCGGGAGAAAATCGCGCGGGAAGATCGTCAGCGGGACACCCTGCG
GTCTCCAATCGTTTGCATCATGGGCCACGTCGATACGGTTAGCGCGGGAG
AAAATCGCGCGGGAAGATCGTCAGCGGGACACCCTGCGGTCTCCAATCGT
TTGCATCATGGGCCACGTCGATACGGGCAAGACGAAGCTGCTTGACAAGA
TTCGCCAAACAAGCGTTCAGGAAGGGGAGGCCGGAGGAATCACGCAGCAG
ATCGGTGCCACCTTTTTCGCCAAGGACACACTGTGCGAAAAGGTACAGTG
CTGCAGAAGAGTACAGTAAGCAAGACGAAGCTGCTTGACAAGATTCGCCA
AACAAGCGTTCAGGAAGGGGAGGCCGGAGGAATCACGCAGCAGATCGGTG
CCACCTTTTTCGCCAAGGACACACTGTGCGAAAAGGTACAGTGCTGCAGA
AGAGTACAGTAA
back to top