mRNA_H-elongata_contig119600.1510.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119600.1510.1
Unique NamemRNA_H-elongata_contig119600.1510.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig119600.1510.1 vs. uniprot
Match: UPI001F8D56D1 (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001F8D56D1)

HSP 1 Score: 58.9 bits (141), Expect = 1.780e-7
Identity = 29/113 (25.66%), Postives = 58/113 (51.33%), Query Frame = 1
Query:    7 AESPGEAWSKLVQHYHASGLKERRRLIVDFYTMKMELDEHPRNFLLRVDQMVKELKRVERPMDPKDVNIVILSGLTSQYDAEVRMLESLSDWTTLDWIERAVINQFNRLESEK 345
            A+S  EAW+ L + Y   GL  +  L+   +  K+        +L ++ ++  +L  +E P+D + + ++ILSGLTS YD  +  +E+     T + +   ++ +  R E ++
Sbjct:   72 AKSAYEAWNNLKKTYEGKGLCRKLGLLRSLFGTKLADSNSMDGYLNKIKEVAHQLSEIESPLDDEFIAVIILSGLTSDYDPLIMAIENSGQKLTTEHVSAKLLQETQRREDKQ 184          
BLAST of mRNA_H-elongata_contig119600.1510.1 vs. uniprot
Match: UPI00103FEA55 (uncharacterized protein LOC114361313 n=2 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103FEA55)

HSP 1 Score: 56.6 bits (135), Expect = 9.870e-7
Identity = 31/112 (27.68%), Postives = 56/112 (50.00%), Query Frame = 1
Query:    7 AESPGEAWSKLVQHYHASGLKERRRLIVDFYTMKMELDEHPRNFLLRVDQMVKELKRVERPMDPKDVNIVILSGLTSQYDAEVRMLESLSDWTTLDWIERAVINQFNRLESE 342
            A+S  EAW+ L + Y   GL  R  L+   +  K+        +L ++ ++  +L  +E P+D + V ++ILSGLT  YD  +  +E  S   + + I   ++ +  R E +
Sbjct:   74 AKSAHEAWTILQKTYEGRGLSRRLGLLRSLFNTKLSECSSMEVYLNKIKEISHQLSEIESPLDDELVAVIILSGLTDDYDPLIMAIEHSSSKLSTEVISTKLLQETQRREEK 185          
BLAST of mRNA_H-elongata_contig119600.1510.1 vs. uniprot
Match: A0A2H1WMK4_SPOFR (SFRICE_021333 n=1 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A2H1WMK4_SPOFR)

HSP 1 Score: 55.5 bits (132), Expect = 2.220e-6
Identity = 28/112 (25.00%), Postives = 57/112 (50.89%), Query Frame = 1
Query:    7 AESPGEAWSKLVQHYHASGLKERRRLIVDFYTMKMELDEHPRNFLLRVDQMVKELKRVERPMDPKDVNIVILSGLTSQYDAEVRMLESLSDWTTLDWIERAVINQFNRLESE 342
            A+S  EAW  L + Y   GL  R  L+   +  K+  +     +L ++ ++  +L  +E P+D + V +++LSGLT  YD  +  +E  +   + + I + ++ +  + E +
Sbjct:   77 AKSAHEAWKILQKAYEGRGLSRRLGLLRSLFNTKLSENSSMEVYLNKIKEISHQLNEIESPLDDEFVAVIMLSGLTDDYDPLIMAIEHSTSKLSTEIISQKLLQETQKREEK 188          
BLAST of mRNA_H-elongata_contig119600.1510.1 vs. uniprot
Match: A0A2H1VB05_SPOFR (SFRICE_041671 (Fragment) n=1 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A2H1VB05_SPOFR)

HSP 1 Score: 53.5 bits (127), Expect = 2.590e-6
Identity = 26/87 (29.89%), Postives = 47/87 (54.02%), Query Frame = 1
Query:    7 AESPGEAWSKLVQHYHASGLKERRRLIVDFYTMKMELDEHPRNFLLRVDQMVKELKRVERPMDPKDVNIVILSGLTSQYDAEVRMLE 267
            A+S  EAW  L + Y   GL  R  L+   ++ K+  +     +L ++ ++  +L  +E P+D + V +++LSGLT  YD  +  +E
Sbjct:   46 AKSAHEAWKILQKAYEGRGLSRRLGLLRSLFSTKLSENSSMEVYLNKIKEISHQLNEIESPLDDEFVAVIMLSGLTDDYDPLIMAIE 132          
BLAST of mRNA_H-elongata_contig119600.1510.1 vs. uniprot
Match: A0A0J7K5G8_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K5G8_LASNI)

HSP 1 Score: 54.7 bits (130), Expect = 5.240e-6
Identity = 32/123 (26.02%), Postives = 65/123 (52.85%), Query Frame = 1
Query:    7 AESPGEAWSKLVQHYHASGLKERRRLIVDFYTMKMELDEHPRNFLLRVDQMVKELKRVERPMDPKDVNIVILSGLTSQYDAEVRMLESLSDWTTLDWIERAVINQFNRLESEKSAAGSKAMFA 375
            AES  EAW  L + Y   GL  R  L+     M ++   +  +++  +  + ++L  +  P+D + + +++LSGLT  Y+  +  LES +   T D+++  ++   +   S  S++G KA+++
Sbjct:   79 AESAREAWLNLQKAYEDKGLSRRLALLRTLAGMILQNFRNMESYVNEIMSVSQKLADMNAPLDDEFIAVIMLSGLTEDYNPMIMALESANVGLTSDFVKAKLLQ--DTKHSISSSSGDKALYS 199          
BLAST of mRNA_H-elongata_contig119600.1510.1 vs. uniprot
Match: UPI00103F0D66 (uncharacterized protein LOC114362197 n=1 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103F0D66)

HSP 1 Score: 53.1 bits (126), Expect = 6.110e-6
Identity = 28/90 (31.11%), Postives = 47/90 (52.22%), Query Frame = 1
Query:    7 AESPGEAWSKLVQHYHASGLKERRRLIVDFYTMKMELDEHPRNFLLRVDQMVKELKRVERPMDPKDVNIVILSGLTSQYDAEVRMLESLS 276
            A+S  EAW+ L + Y   GL  R  L+   +  K+        +L ++ ++  +L  +E P+D + V ++ILSGLT  YD  +  +E  S
Sbjct:   74 AKSAHEAWTILQKTYEGRGLSRRLGLLRSLFNTKLSECSSMEVYLNKIKEISHQLSEIESPLDDELVAVIILSGLTDDYDPLIMAIEHSS 163          
BLAST of mRNA_H-elongata_contig119600.1510.1 vs. uniprot
Match: X1XSQ9_ACYPI (CCHC-type domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1XSQ9_ACYPI)

HSP 1 Score: 52.8 bits (125), Expect = 1.710e-5
Identity = 35/131 (26.72%), Postives = 68/131 (51.91%), Query Frame = 1
Query:   28 WSKLVQHYHASGLKERRRLIVDFYTMKMELDEHPRNFLLRVDQMVKELKRVERPMDPKDVNIVILSGLTSQYDAEVRMLESLSDWT-TLDWIERAVINQF-NRLESE--KSAAGSKAMFAGRGNDHGSNPP 408
            W KL+  +   G+  R  L+    T+K   +E   N+L+R D +V++LK     ++   +  ++L  L   Y   V  +E+LS+ + T+D+++  +++++  R+ S+  KSA  S + F+     H  N P
Sbjct:   55 WDKLIATFERKGVSSRLYLLKRLLTIKYNEEEPIENYLIRFDDLVRQLKSAGGKIEEDFLACLLLLSLPESYGIVVTAIETLSNNSITVDFVKCRLMDEYLKRINSDHVKSAVDSSSAFSSMIKCHECNEP 185          
BLAST of mRNA_H-elongata_contig119600.1510.1 vs. uniprot
Match: UPI00193D6898 (uncharacterized protein LOC113006278 n=1 Tax=Solenopsis invicta TaxID=13686 RepID=UPI00193D6898)

HSP 1 Score: 53.1 bits (126), Expect = 2.020e-5
Identity = 32/116 (27.59%), Postives = 63/116 (54.31%), Query Frame = 1
Query:    7 AESPGEAWSKLVQHYHASGLKERRRLIVDFYTMKMELDEHPRNFLLRVDQMVKELKRVERPMDPKDVNIVILSGLTSQYDAEVRMLESLSDWTTLDWIERAVIN--QFNRLESEKS 348
            AE+  EAWS L + Y   GL  R  L+     MK++  ++   ++  +  + ++L  ++  +D + V +++LSGLT  Y+  V  LES +   T D+++  ++   +++   SEK+
Sbjct:   79 AENAKEAWSNLQKAYEDKGLSRRLTLLRTLSGMKLQNFKNMELYVSEIMSISQKLADMDAALDDEFVAVIMLSGLTEDYNPMVMALESANIRLTSDFVKAKLLQDIKYSNSSSEKA 194          
BLAST of mRNA_H-elongata_contig119600.1510.1 vs. uniprot
Match: A0A2A4K3A2_HELVI (CCHC-type domain-containing protein n=1 Tax=Heliothis virescens TaxID=7102 RepID=A0A2A4K3A2_HELVI)

HSP 1 Score: 52.0 bits (123), Expect = 4.410e-5
Identity = 28/113 (24.78%), Postives = 59/113 (52.21%), Query Frame = 1
Query:    7 AESPGEAWSKLVQHYHASGLKERRRLIVDFYTMKMELDEHPRNFLLRVDQMVKELKRVERPMDPKDVNIVILSGLTSQYDAEVRMLESLSDWTTLDWIERAVINQFNRLESEK 345
            A++  EAW  L + +   GL  R  L+   +  K+  +     +L ++  + ++L  +  P+D + V +++LSGLTS +D  +  LE+ +     D ++  ++ +F R E ++
Sbjct:   77 AKTAFEAWHNLQRAFEDKGLCRRLSLLRSLFGTKLGENTSMEGYLSKITNLSQQLSDIGFPLDDEFVAVLMLSGLTSDFDPLIMALENSNTKLHSDTVKGKLLQEFQRREEKE 189          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119600.1510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
UPI001F8D56D11.780e-725.66Uncharacterized protein n=1 Tax=Spodoptera exigua ... [more]
UPI00103FEA559.870e-727.68uncharacterized protein LOC114361313 n=2 Tax=Ostri... [more]
A0A2H1WMK4_SPOFR2.220e-625.00SFRICE_021333 n=1 Tax=Spodoptera frugiperda TaxID=... [more]
A0A2H1VB05_SPOFR2.590e-629.89SFRICE_041671 (Fragment) n=1 Tax=Spodoptera frugip... [more]
A0A0J7K5G8_LASNI5.240e-626.02Retrovirus-related pol polyprotein from transposon... [more]
UPI00103F0D666.110e-631.11uncharacterized protein LOC114362197 n=1 Tax=Ostri... [more]
X1XSQ9_ACYPI1.710e-526.72CCHC-type domain-containing protein n=1 Tax=Acyrth... [more]
UPI00193D68982.020e-527.59uncharacterized protein LOC113006278 n=1 Tax=Solen... [more]
A0A2A4K3A2_HELVI4.410e-524.78CCHC-type domain-containing protein n=1 Tax=Heliot... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119600contigH-elongata_contig119600:1257..1664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size408
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929700.3069644-CDS-H-elongata_contig119600:1256..16641622929700.3069644-CDS-H-elongata_contig119600:1256..1664Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119600 1257..1664 -
1691679124.0071762-CDS-H-elongata_contig119600:1256..16641691679124.0071762-CDS-H-elongata_contig119600:1256..1664Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119600 1257..1664 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119600.1510.1prot_H-elongata_contig119600.1510.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119600 1257..1664 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119600.1510.1

>prot_H-elongata_contig119600.1510.1 ID=prot_H-elongata_contig119600.1510.1|Name=mRNA_H-elongata_contig119600.1510.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
QEAESPGEAWSKLVQHYHASGLKERRRLIVDFYTMKMELDEHPRNFLLRV
DQMVKELKRVERPMDPKDVNIVILSGLTSQYDAEVRMLESLSDWTTLDWI
ERAVINQFNRLESEKSAAGSKAMFAGRGNDHGSNPP
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mRNA from alignment at H-elongata_contig119600:1257..1664-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119600.1510.1 ID=mRNA_H-elongata_contig119600.1510.1|Name=mRNA_H-elongata_contig119600.1510.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=408bp|location=Sequence derived from alignment at H-elongata_contig119600:1257..1664- (Himanthalia elongata Himel1 dioecious)
CAAGAAGCTGAGTCGCCCGGGGAAGCGTGGTCAAAGCTCGTGCAGCACTA CCACGCCAGCGGCCTCAAGGAACGACGCCGCCTCATTGTGGACTTCTATA CGATGAAGATGGAACTCGACGAGCATCCGCGCAATTTTTTGCTGCGGGTG GACCAGATGGTCAAGGAACTGAAAAGAGTGGAGCGACCGATGGACCCGAA GGACGTGAACATCGTAATTCTCAGCGGCCTCACCTCCCAGTACGACGCCG AGGTTCGAATGCTGGAGAGTTTATCAGACTGGACCACTCTAGATTGGATA GAACGAGCTGTCATCAACCAGTTCAATCGCCTGGAGTCTGAAAAATCTGC AGCTGGGAGTAAGGCTATGTTCGCGGGACGCGGCAATGACCATGGATCGA ACCCCCCC
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Coding sequence (CDS) from alignment at H-elongata_contig119600:1257..1664-

>mRNA_H-elongata_contig119600.1510.1 ID=mRNA_H-elongata_contig119600.1510.1|Name=mRNA_H-elongata_contig119600.1510.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig119600:1257..1664- (Himanthalia elongata Himel1 dioecious)
CAAGAAGCTGAGTCGCCCGGGGAAGCGTGGTCAAAGCTCGTGCAGCACTA
CCACGCCAGCGGCCTCAAGGAACGACGCCGCCTCATTGTGGACTTCTATA
CGATGAAGATGGAACTCGACGAGCATCCGCGCAATTTTTTGCTGCGGGTG
GACCAGATGGTCAAGGAACTGAAAAGAGTGGAGCGACCGATGGACCCGAA
GGACGTGAACATCGTAATTCTCAGCGGCCTCACCTCCCAGTACGACGCCG
AGGTTCGAATGCTGGAGAGTTTATCAGACTGGACCACTCTAGATTGGATA
GAACGAGCTGTCATCAACCAGTTCAATCGCCTGGAGTCTGAAAAATCTGC
AGCTGGGAGTAAGGCTATGTTCGCGGGACGCGGCAATGACCATGGATCGA
ACCCCCCCCAAGAAGCTGAGTCGCCCGGGGAAGCGTGGTCAAAGCTCGTG
CAGCACTACCACGCCAGCGGCCTCAAGGAACGACGCCGCCTCATTGTGGA
CTTCTATACGATGAAGATGGAACTCGACGAGCATCCGCGCAATTTTTTGC
TGCGGGTGGACCAGATGGTCAAGGAACTGAAAAGAGTGGAGCGACCGATG
GACCCGAAGGACGTGAACATCGTAATTCTCAGCGGCCTCACCTCCCAGTA
CGACGCCGAGGTTCGAATGCTGGAGAGTTTATCAGACTGGACCACTCTAG
ATTGGATAGAACGAGCTGTCATCAACCAGTTCAATCGCCTGGAGTCTGAA
AAATCTGCAGCTGGGAGTAAGGCTATGTTCGCGGGACGCGGCAATGACCA
TGGATCGAACCCCCCC
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