mRNA_H-elongata_contig11956.1505.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11956.1505.1
Unique NamemRNA_H-elongata_contig11956.1505.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig11956.1505.1 vs. uniprot
Match: D7FJI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJI2_ECTSI)

HSP 1 Score: 363 bits (932), Expect = 2.770e-115
Identity = 305/593 (51.43%), Postives = 338/593 (57.00%), Query Frame = 1 
Query:    7 QEPVSGLSDIRTKIEHLGLGGAMVDLGCGSVDAQPSEGGGVLLMVTGSITISGMDPRQFCQTFFLARQFQDTDRHNYFVRNDIFRFLDTLPEVVQAAIVSREEVEGAPGCS--DTAAAANVGQGLGGWEHPGAATMDADSEAPVVSEAPTLASASVANPTTVSDVTPASADIVDGVAPHPESQVAAPFSASPTVAVETAPAAAVN--VPLAIVGDRKAIAAGSGGVVEASELDNGVVGKAPTGKVASIATDVPVVHSPEKDNAVRSAPTSPVLPPPTAAALPVASPAPTSAAAAPSTP----------------MTYASLAKSWATIAAVGGDAPAPPLSVAGGAPXXXXXXXXXXXXXXXXXXXATATPASNGGWGISDVAAG--LKVEQVSVGDRG----QASSRPSPSTGK--KGLRPHIPHHASPAVAASAXXXREAAAAGNGEILPATSLFVRKVDMTIEKEDMIVHFSKYGEVTGISMNPTRGYAFIDYRTHECVQRALSTKEHVVNRKLLVVEERHSPIVQRNSRGEHGFRLEGGRNGPRGRGMGGRDXXXXXXXXXXXXXXXXXXVGRDHRADSKDGGYKPRGRA 1701
            +EPVSGL DI+ KI+HLGLGGA VDLGCGSVDAQPSEGGGVLLMVTGSITI+  DPRQFCQTFFLARQ QD DRHNYFVRNDIFRFLD LPEVVQAA+ +R+E +G+   S    A  ++  + +G      A T     + PV    P   +AS      V + +P +  +  G AP  ESQVAA   A                  P A+ G                 LDNG   K P  KV                      P SPV      A+ P  S   T  AAA                    MTYASLAKSWAT+AA  G              XXXXXXXXXXXXXXXXXXX         G     VA G  L +EQ  VG  G    Q  SRPS +TGK  KG   +IPHHASPAVAASAXXX EAAAAGNGEI+PATSLFVRKVDMTI++++MI HFS YGEVTGISMNPTRGYAFIDYRT+ECVQ ALSTKEH VNRKLLVVEERHSP+VQRNSRGEHG    GGR G              X              GRD     KDGGY+ RGRA
Sbjct:   52 EEPVSGLEDIKAKIKHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIANTDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEVVQAALKARDEEDGSTARSALPPAEESSKPESVGEETVAAAVTQVHVQDTPV----PQQTTASPVATAAVPESSPPA--MAAGAAPPSESQVAASTDAXXXXXXXXXXXXXXXXXAPAAVAG-----------------LDNGSADKTPAAKV----------------------PPSPV-----GASTPAES---TETAAAEXXXXXXXXXXXXXXXXXXXMTYASLAKSWATVAADSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG----AVAGGAVLTIEQP-VGQPGPGVVQHGSRPSSATGKGQKGPGAYIPHHASPAVAASAXXXXEAAAAGNGEIMPATSLFVRKVDMTIDRDEMIAHFSAYGEVTGISMNPTRGYAFIDYRTNECVQIALSTKEHYVNRKLLVVEERHSPMVQRNSRGEHG----GGRGGX----XXXXXRVSSXRDGRDGDRRPTGRGGRDRPDGPKDGGYRARGRA 578
[Close]
BLAST of mRNA_H-elongata_contig11956.1505.1 vs. uniprot
Match: A0A6H5L110_9PHAE (NTF2 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L110_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 3.970e-48
Identity = 88/106 (83.02%), Postives = 96/106 (90.57%), Query Frame = 1 
Query:    7 QEPVSGLSDIRTKIEHLGLGGAMVDLGCGSVDAQPSEGGGVLLMVTGSITISGMDPRQFCQTFFLARQFQDTDRHNYFVRNDIFRFLDTLPEVVQAAIVSREEVEG 324
            +EPVSGL DI+ KI+HLGLGGA VDLGCGSVDAQPSEGGGVLLMVTGSITI+  DPRQFCQTFFLARQ QD DRHNYFVRNDIFRFLD LPEVVQAA+ +R+E +G
Sbjct:   52 EEPVSGLEDIKAKIKHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIANTDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEVVQAALKARDEEDG 157
[Close]
BLAST of mRNA_H-elongata_contig11956.1505.1 vs. uniprot
Match: A0A835Z9L7_9STRA (NTF2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9L7_9STRA)

HSP 1 Score: 122 bits (305), Expect = 3.670e-27
Identity = 62/108 (57.41%), Postives = 77/108 (71.30%), Query Frame = 1 
Query:    7 QEPVSGLSDIRTKIEHLGLGGAMVDLGCGSVDAQPSEGGGVLLMVTGSITISGMDPRQFCQTFFLARQFQDTDRHNYFVRNDIFRFLDTLPEVVQAAIVSREEVEGAP 330
            ++PV+GL +I+ KI  LGL  A VDL CGSVDAQPS   G++LMVTGSI + G   RQF QTFFLA Q Q   RHNY V NDIFR LDT+P+V++AA+ +    + AP
Sbjct:   54 EDPVTGLENIKAKILSLGLADATVDLDCGSVDAQPSVDDGIILMVTGSIKLQGQRLRQFAQTFFLALQLQKNGRHNYVVMNDIFRLLDTIPDVLKAAVDAHATPDHAP 161
[Close]
BLAST of mRNA_H-elongata_contig11956.1505.1 vs. uniprot
Match: A0A835YRG6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRG6_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.850e-24
Identity = 58/98 (59.18%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:    7 QEPVSGLSDIRTKIEHLGLGGAMVDLGCGSVDAQPSEGGGVLLMVTGSITISGMDPRQFCQTFFLARQFQDTDRHNYFVRNDIFRFLDTLPEVVQAAI 300
            ++PV GL +I+ KI  LGL  A VDL CGSVD Q S+ G +LLMVTG+IT+ G  PRQF QTF LA   Q   RHN+FV ND+FR LDT+PEV++AA+
Sbjct:   51 EQPVMGLENIKEKIRGLGLADATVDLDCGSVDIQASQNGSILLMVTGAITLRGQAPRQFAQTFLLATHRQMDGRHNFFVLNDVFRLLDTIPEVLEAAL 148
[Close]
BLAST of mRNA_H-elongata_contig11956.1505.1 vs. uniprot
Match: D7FSS4_ECTSI (Poly(A)-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSS4_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 4.920e-16
Identity = 50/97 (51.55%), Postives = 68/97 (70.10%), Query Frame = 1 
Query: 1243 AAAAGNGEILPA--TSLFVRKVDMTIEKEDMIVHFSKYGEVTGISMNPTRGYAFIDYRTHECVQRALSTKEHVVNRKLLVVEERHSPIVQRNSRGEH 1527
            AAAAG  +  PA  T+LFVRK+DM +++ED+I HFS +G+V  +SMNP+RGYAF+D  +H+ V RA+ T EH V RK L VE +  P   + SRG +
Sbjct:  305 AAAAGWRQRDPAGPTTLFVRKIDMKVDREDVIKHFSIFGQVLSVSMNPSRGYAFVDLDSHDAVLRAVRTAEHTVGRKTLQVEVKKEPATPK-SRGNN 400
[Close]
BLAST of mRNA_H-elongata_contig11956.1505.1 vs. uniprot
Match: A0A6H5L5V4_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5V4_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 7.400e-16
Identity = 47/92 (51.09%), Postives = 65/92 (70.65%), Query Frame = 1 
Query: 1243 AAAAGNGEILPA--TSLFVRKVDMTIEKEDMIVHFSKYGEVTGISMNPTRGYAFIDYRTHECVQRALSTKEHVVNRKLLVVEERHSPIVQRN 1512
            AAAAG  +  PA  T+LFVRK+DM +++ED+I HFS +G+V  +SMNP+RGYAF+D  +H+ V RA+ T EH V RK L VE +  P   ++
Sbjct:  424 AAAAGWRQRDPAGPTTLFVRKIDMKVDREDVIKHFSSFGKVLSVSMNPSRGYAFVDLDSHDAVLRAVRTAEHTVGRKTLQVEVKKEPATPKS 515
[Close]
BLAST of mRNA_H-elongata_contig11956.1505.1 vs. uniprot
Match: A0A7S2GVT4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GVT4_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.370e-13
Identity = 46/98 (46.94%), Postives = 60/98 (61.22%), Query Frame = 1 
Query:    7 QEPVSGLSDIRTKIEHLGLGGAMVDLGCGSVDAQPSEGGGVLLMVTGSITISGMDPRQFCQTFFLARQFQDTDRHN--YFVRNDIFRFLDTLPEVVQA 294
            ++PV G+  I+ KI   G   A+ +L  GS+DAQPS+ GGVLLMVTG+IT     PRQF Q+FFLA Q      +   YFV ND FR +   P V+ +
Sbjct:   56 EDPVMGMEQIKAKIAERGCLNAIFNLEHGSIDAQPSKDGGVLLMVTGTITKKNAPPRQFVQSFFLAEQQNSIKTYPPAYFVLNDTFRIVTPPPNVINS 153
[Close]
BLAST of mRNA_H-elongata_contig11956.1505.1 vs. uniprot
Match: A0A7S3Y115_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y115_HETAK)

HSP 1 Score: 77.4 bits (189), Expect = 4.200e-13
Identity = 47/93 (50.54%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:   10 EPVSGLSDIRTKIEHLGLGGAMVDLGCGSVDAQPSEGGGVLLMVTGSITIS-GMDPRQ-FCQTFFLA-----RQFQDTDRHNYFVRNDIFRFL 267
            EPV+G+  I+TKI  LGL GA V++G GSVDAQ S  GGV+++VTG+I ++ G  P Q F QTFFLA     +Q +     +YFV ND  RF+
Sbjct:   50 EPVTGIEAIKTKITGLGLEGAKVEVGQGSVDAQASRDGGVVMLVTGTIALATGQQPAQAFAQTFFLAPQVVVQQGRTAPVPSYFVLNDTLRFV 142
[Close]
BLAST of mRNA_H-elongata_contig11956.1505.1 vs. uniprot
Match: A0A7S2RRZ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RRZ8_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 8.250e-13
Identity = 46/101 (45.54%), Postives = 57/101 (56.44%), Query Frame = 1 
Query:    7 QEPVSGLSDIRTKIEHLGLGGAMVDLGCGSVDAQPSEGGGVLLMVTGSITISGMDPRQFCQTFFLARQFQDTDRH-NYFVRNDIFRFLDTLPEVVQAAIVS 306
            Q PV G+  I+  I   G    ++DL  GSVDAQPS+ GGVLL+VTG +T     PRQF QTFFLA Q        +Y++ ND  R LD +     AA  S
Sbjct:   97 QGPVGGMQKIKEVIRQRGSEHWVLDLESGSVDAQPSKDGGVLLLVTGILTTQNQPPRQFVQTFFLASQASTNGTSASYYILNDTLRILDPVHPPPAAAAAS 197
[Close]
BLAST of mRNA_H-elongata_contig11956.1505.1 vs. uniprot
Match: A0A6U5KB31_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5KB31_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.500e-11
Identity = 44/93 (47.31%), Postives = 59/93 (63.44%), Query Frame = 1 
Query:   10 EPVSGLSDIRTKIEHLGLGGAMVDLGCGSVDAQPSEGGGVLLMVTGSITISGMD----PRQFCQTFFLARQFQDTDRHNYFVRNDIFRFLDTL 276
            EPV G  +IR+    L L  A VDL  GS+DAQ S+ GGVL++VTG IT+  +     PR F  TFFL+R+     + +++V NDIFRFLD +
Sbjct:   68 EPVVGSDEIRSTFSSLRLSDAQVDLEDGSLDAQDSKEGGVLIVVTGKITLMDVQEFAYPRHFVHTFFLSRE----GKKHFYVLNDIFRFLDNM 156
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11956.1505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJI2_ECTSI2.770e-11551.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L110_9PHAE3.970e-4883.02NTF2 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A835Z9L7_9STRA3.670e-2757.41NTF2 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A835YRG6_9STRA1.850e-2459.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FSS4_ECTSI4.920e-1651.55Poly(A)-binding protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5V4_9PHAE7.400e-1651.09RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2GVT4_9STRA3.370e-1346.94Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3Y115_HETAK4.200e-1350.54Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2RRZ8_9STRA8.250e-1345.54Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A6U5KB31_9STRA2.500e-1147.31Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11956contigH-elongata_contig11956:1172..6126 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score365.2
Seed ortholog evalue5.7e-98
Seed eggNOG ortholog2880.D7FJI2
Preferred nameG3BP2
KEGG koko:K14050,ko:K14328,ko:K17265,ko:K19718
KEGG Pathwayko03013,ko03015,ko04139,map03013,map03015,map04139
KEGG ModuleM00430
GOsGO:0000003,GO:0000375,GO:0000377,GO:0000398,GO:0000932,GO:0001654,GO:0001736,GO:0001738,GO:0001745,GO:0001751,GO:0001752,GO:0001754,GO:0002009,GO:0002064,GO:0002065,GO:0002066,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003678,GO:0003723,GO:0003724,GO:0003729,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006396,GO:0006397,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006914,GO:0006996,GO:0007154,GO:0007163,GO:0007164,GO:0007165,GO:0007253,GO:0007264,GO:0007265,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007389,GO:0007399,GO:0007423,GO:0008026,GO:0008069,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009056,GO:0009653,GO:0009798,GO:0009887,GO:0009888,GO:0009889,GO:0009893,GO:0009950,GO:0009953,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010604,GO:0010628,GO:0010646,GO:0010648,GO:0016043,GO:0016070,GO:0016071,GO:0016236,GO:0016318,GO:0016333,GO:0016334,GO:0016462,GO:0016579,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023052,GO:0023057,GO:0030111,GO:0030154,GO:0030159,GO:0030178,GO:0030182,GO:0030707,GO:0030855,GO:0031323,GO:0031326,GO:0032088,GO:0032386,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032508,GO:0032879,GO:0032947,GO:0032991,GO:0033036,GO:0034063,GO:0034517,GO:0034622,GO:0034641,GO:0035556,GO:0035770,GO:0035973,GO:0036211,GO:0036464,GO:0040008,GO:0042067,GO:0042623,GO:0042706,GO:0042994,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043433,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0044877,GO:0045165,GO:0045185,GO:0045570,GO:0045571,GO:0045926,GO:0046483,GO:0046530,GO:0046552,GO:0046620,GO:0046621,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048592,GO:0048609,GO:0048638,GO:0048640,GO:0048663,GO:0048699,GO:0048729,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051090,GO:0051093,GO:0051171,GO:0051179,GO:0051220,GO:0051235,GO:0051239,GO:0051241,GO:0051252,GO:0051276,GO:0051704,GO:0051716,GO:0060255,GO:0060341,GO:0060429,GO:0060627,GO:0060628,GO:0060828,GO:0061912,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070035,GO:0070646,GO:0070647,GO:0070925,GO:0071103,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090090,GO:0090304,GO:0090596,GO:0097159,GO:0140097,GO:0140098,GO:1901360,GO:1901363,GO:1901564,GO:1903506,GO:1905538,GO:1990861,GO:1990904,GO:2000026,GO:2000112,GO:2000156,GO:2001141
EggNOG free text desc.ras GTPase-activating protein-binding protein
EggNOG OGsKOG0116@1,KOG0116@2759
EC2.5.1.60,3.6.4.12,3.6.4.13
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01006,ko03019,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNuclear transport factor 2
Ec32 orthologEc-04_006210.1
Exons10
Model size1713
Cds size1713
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11956.1505.1prot_H-elongata_contig11956.1505.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11956 1172..6126 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929699.4425554-CDS-H-elongata_contig11956:1171..12831622929699.4425554-CDS-H-elongata_contig11956:1171..1283Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11956 1172..1283 -
1691679123.6504912-CDS-H-elongata_contig11956:1171..12831691679123.6504912-CDS-H-elongata_contig11956:1171..1283Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11956 1172..1283 -
1622929699.4682746-CDS-H-elongata_contig11956:1518..15781622929699.4682746-CDS-H-elongata_contig11956:1518..1578Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11956 1519..1578 -
1691679123.662543-CDS-H-elongata_contig11956:1518..15781691679123.662543-CDS-H-elongata_contig11956:1518..1578Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11956 1519..1578 -
1622929699.4899647-CDS-H-elongata_contig11956:1991..20931622929699.4899647-CDS-H-elongata_contig11956:1991..2093Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11956 1992..2093 -
1691679123.6707609-CDS-H-elongata_contig11956:1991..20931691679123.6707609-CDS-H-elongata_contig11956:1991..2093Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11956 1992..2093 -
1622929699.5089362-CDS-H-elongata_contig11956:2423..25631622929699.5089362-CDS-H-elongata_contig11956:2423..2563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11956 2424..2563 -
1691679123.6792102-CDS-H-elongata_contig11956:2423..25631691679123.6792102-CDS-H-elongata_contig11956:2423..2563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11956 2424..2563 -
1622929699.522579-CDS-H-elongata_contig11956:2784..29131622929699.522579-CDS-H-elongata_contig11956:2784..2913Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11956 2785..2913 -
1691679123.6880112-CDS-H-elongata_contig11956:2784..29131691679123.6880112-CDS-H-elongata_contig11956:2784..2913Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11956 2785..2913 -
1622929699.536425-CDS-H-elongata_contig11956:3405..38491622929699.536425-CDS-H-elongata_contig11956:3405..3849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11956 3406..3849 -
1691679123.699759-CDS-H-elongata_contig11956:3405..38491691679123.699759-CDS-H-elongata_contig11956:3405..3849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11956 3406..3849 -
1622929699.5482721-CDS-H-elongata_contig11956:4316..46011622929699.5482721-CDS-H-elongata_contig11956:4316..4601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11956 4317..4601 -
1691679123.7130673-CDS-H-elongata_contig11956:4316..46011691679123.7130673-CDS-H-elongata_contig11956:4316..4601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11956 4317..4601 -
1622929699.5614653-CDS-H-elongata_contig11956:5081..52311622929699.5614653-CDS-H-elongata_contig11956:5081..5231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11956 5082..5231 -
1691679123.7225688-CDS-H-elongata_contig11956:5081..52311691679123.7225688-CDS-H-elongata_contig11956:5081..5231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11956 5082..5231 -
1622929699.5763724-CDS-H-elongata_contig11956:5533..57031622929699.5763724-CDS-H-elongata_contig11956:5533..5703Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11956 5534..5703 -
1691679123.7299728-CDS-H-elongata_contig11956:5533..57031691679123.7299728-CDS-H-elongata_contig11956:5533..5703Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11956 5534..5703 -
1622929699.590998-CDS-H-elongata_contig11956:6005..61261622929699.590998-CDS-H-elongata_contig11956:6005..6126Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11956 6006..6126 -
1691679123.737331-CDS-H-elongata_contig11956:6005..61261691679123.737331-CDS-H-elongata_contig11956:6005..6126Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11956 6006..6126 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11956.1505.1

>prot_H-elongata_contig11956.1505.1 ID=prot_H-elongata_contig11956.1505.1|Name=mRNA_H-elongata_contig11956.1505.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=571bp
MGQEPVSGLSDIRTKIEHLGLGGAMVDLGCGSVDAQPSEGGGVLLMVTGS
ITISGMDPRQFCQTFFLARQFQDTDRHNYFVRNDIFRFLDTLPEVVQAAI
VSREEVEGAPGCSDTAAAANVGQGLGGWEHPGAATMDADSEAPVVSEAPT
LASASVANPTTVSDVTPASADIVDGVAPHPESQVAAPFSASPTVAVETAP
AAAVNVPLAIVGDRKAIAAGSGGVVEASELDNGVVGKAPTGKVASIATDV
PVVHSPEKDNAVRSAPTSPVLPPPTAAALPVASPAPTSAAAAPSTPMTYA
SLAKSWATIAAVGGDAPAPPLSVAGGAPASSSSSPSGAGSVSASGNGATA
TPASNGGWGISDVAAGLKVEQVSVGDRGQASSRPSPSTGKKGLRPHIPHH
ASPAVAASAAAAREAAAAGNGEILPATSLFVRKVDMTIEKEDMIVHFSKY
GEVTGISMNPTRGYAFIDYRTHECVQRALSTKEHVVNRKLLVVEERHSPI
VQRNSRGEHGFRLEGGRNGPRGRGMGGRDGRYGFDRRSIGGRGGRSGVGR
DHRADSKDGGYKPRGRAMPT*
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mRNA from alignment at H-elongata_contig11956:1172..6126-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11956.1505.1 ID=mRNA_H-elongata_contig11956.1505.1|Name=mRNA_H-elongata_contig11956.1505.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4955bp|location=Sequence derived from alignment at H-elongata_contig11956:1172..6126- (Himanthalia elongata Himel1 dioecious)
ATGGGGCAGGAGCCGGTTTCTGGCCTCTCTGATATACGCACCAAAATCGA
GCACCTCGGCCTGGGAGGTGCCATGGTCGATCTAGGCTGCGGTTCTGTTG
ACGCCCAGCCTTCCGAAGGAGGTGAGAAGATGGTTTCTAACCAACAACCT
CGAAATCCGGTTGAGTGGTAATAAACGTTCATTAAAATCAAACCCACTGG
GCTACAGTTGGTAACTAGCCACGCGCGACTGTTGTCAGGTCAGTGGTCAT
GGGCACAATAATGTAATTGGCAAAAAAAAAGAATAATTCCTGTGTTCAGG
TTTTATACACATGGTGTTTCGGCCGATCCACTATCGGGGTATGTTTGACA
TTCTTACCCCTAGTGTATATGTCGCTGCTGAGCTGTATCCCCGCTATTCA
TGCCGCTGCGTCCTCTATGGCAGGCGGGGTGCTTCTAATGGTGACTGGGT
CTATTACCATATCTGGTATGGACCCTCGGCAGTTTTGCCAAACATTCTTC
CTTGCGAGGCAATTTCAAGACACAGATCGTCACAACTACTTCGTTCGAAA
TGATATATTTCGCTTCTTAGACACTCTTCCAGAAGTCGTCCAGGTGTGTA
CAGGGTAACATCATGCAACGATGCCTCGTCTTGTATCTCATATTTGACGT
CACTTTAAGGATGATATTTTAAAATTATTTATGTTTTCTAAAAAGATTCT
TGATCGTTCTCGTTCAAGGGTTGGAGGCGGTATGATTGGCCGATGTTTGG
GGGGTAAGGTGAATATCCCGCTGGTTGTTCCTTAAAAACCTATTTTTGTT
CGGGACATGTTTAACCTGTTAGCAGCTAGGCTAAGCTTACGAGCGCGCAG
GGTTTTCTCATTTCCTTATCCCGTCCTATCCCATTTTTACGACAGGCTGC
AATCGTCTCCCGAGAAGAGGTGGAGGGAGCTCCCGGTTGCTCGGATACTG
CTGCTGCCGCCAATGTGGGCCAGGGGTTGGGAGGTTGGGAGCACCCGGGT
GCTGCCACGATGGACGCTGACTCGGAAGCTCCTGTAGTCTCTGAGGTGTG
ATATATAGAGTAATGTACTGGAGATAAGAAGGAATAGATCCATGCTGTGC
GTCTGTCTTAACATGAATGTCGATTTTCCTATTTTTTTCCAAACTACCTT
ATGCTAAACCTGAACAAAACTACTCGAGACAAAAGACCAGTACACTATAC
CTATTAATACTTCATTCAGAAGTTGGCGTTGGGGGGGGGTTAGAGTGTCT
CTTCAGGCAGACACAGATGCATATACGTACTGTTTTTATTAAGACTTGCG
ATGGTTCTGACAGCTTCGTTCGTCTAATGCACAAAAGAGAAACAGTGATG
TTTAAAGCGTTCACCTCCTCCCTATTTTTACTTGTTTTAATGTAGTATCT
TGTTTAGTAAGTATGCGCTAGATAATCTTAGAGAGCTCTTCCTAATTATC
AGACTTTCCACGTTGACTCGCCCCCCTCATCTACCCTCCGTAATATTACT
TTTTCTTTGAAACCCGTTTGTTCAGGCTCCCACGCTCGCCTCCGCCTCAG
TAGCAAACCCCACGACTGTTTCAGACGTGACCCCGGCTTCGGCTGACATA
GTGGATGGTGTAGCACCCCATCCAGAGTCCCAGGTGGCAGCTCCCTTCTC
GGCGTCCCCAACTGTTGCGGTGGAGACTGCCCCGGCCGCGGCCGTTAATG
TTCCTCTAGCTATCGTTGGGGACAGGAAAGCTATTGCTGCCGGTTCCGGG
GGTGTGGTAGAGGCGTCAGAGTTGGACAACGGGGTGGTGGGCAAAGCTCC
CACGGGGAAGGTAAGCTAAGAGCATTCTCCTTTCATTTAGAGAGGGGGGG
GGGGTGGCTGTGGATAGTGGAGGCCTAGTTGTATTATCTATCTATGTTGC
ACCATTTACGAAGCTGGAGCAATCCTCACGGCGCTAAGAAGGTGTGGATG
TTCAGAGGGTTGGAATGAGTTCAAGGTTTTTCTAATAAAAATAAAATATA
TTCTTCTATAATGGTGCATTATATTTTATACAAAATGGTACCGGGTACAA
AGACTATAACGATGTAGTGATAAGTAGTTAATTTGGTACAAAACATATTT
TTGCTCTTTTTGTTATCGAGAAGACGAGCGACATCCCGGCGGCGATGGAC
ATAACATCCGCGTCTAAGAATGACGCCCCGTCAAGCAGATTTGGCGCCGT
GTTACGTTATCTACTACCGATAGTGGTTTCAAGGTGATCGCCTCCTGCGC
ACCCCCACCGTCCATTTTCCACCCCAGGTGGCTTCCATCGCAACAGACGT
TCCCGTCGTACATTCTCCAGAGAAGGATAACGCCGTCCGTTCTGCGCCGA
CATCTCCCGTGTTGCCGCCACCTACGGCGGCAGCTTTACCAGTTGCCTCC
CCCGCCCCGACCTCCGCCGCAGCCGCTCCTTCAACGCCCATGACGTACGC
CTCTCTGGCGAAATCTTGGGCGACCATCGCTGCCGTCGGCGGGGATGCTC
CAGCCCCTCCCCTCTCGGTGGCCGGGGGGGCTCCCGCCTCCTCTTCTTCC
AGCCCCTCGGGTGCCGGTTCGGTGTCCGCCAGTGGCAATGGAGCAACAGC
GACACCCGCGAGTAACGGGGGTTGGGGAATCTCTGATGTCGCTGCGGGGT
TGAAGGTGGAGCAAGTTTCGGTTGGCGACCGAGGACAGGCGTCCTCTCGT
CCGTCCCCTTCGACCGGCAAGGTGTGTTTCCCCGGTTTGTCAGTTGAGCC
TTCTATTGGATATTGGGTATTGAGAATTGGATACTAAGAGGATAATAGAC
AATTTCGGAAATGCCTTGAAAAAAACTCACATTTATCTAAAATTTTGTAA
AAAAGACACAAGGAAGCTCCGTATGAAGATAATCCAAGATGTTCATTCTT
ATACGGCGGCGGAACAGCGTTTGAAGTCGCTGTTTATTACGCCGCATTTT
GAGGGTTTTCCTCCCCTAACATATTTTGGGGTATCATGGTGATATATTGA
GGACTATTGGCTCAGTGCCGGCGGACTCTCGGTAGTAAATGCCATCGGTA
CTCAATTGCGAGGCAACCAAATCCGGTTGATCTTACTCTGCTAAATGTGA
TGACCACACATGTTGCACTCTGCCACGTAGCAGGGGATACATAAAAAAAA
GCCTTGGCGTGTAATTTTATAGCGTTTTTGCTTTGCTTTGTTTGTTTTTT
CCGCCACGGACAGAAGGGGCTACGTCCGCACATCCCCCACCACGCATCCC
CCGCGGTGGCTGCCTCTGCCGCCGCCGCTCGTGAGGCTGCCGCAGCCGGG
AATGGGGAAATCCTTCCGGCAACTTCTCTTTTCGTAAGAAAGGTATGACA
TATTTTTTTGCTATAATCCGGGGTTGTTTCGGGCGAGGCCATTTTAAATG
GGATTGGTTATCGAAGACCAGCGGATTGTCTCTCAGGCCTGCCTGCGTGT
GTAATTTCAGGAATGTCATACGGAGAGATGTTCTAATCGTCATCAAACCT
CTTTTTGAAACCCCCGTCGGCGGATGTTTAAATCGCTACTCGTTGACCTG
GTGACCCTGACAGGTGGACATGACCATCGAAAAAGAAGATATGATTGTTC
ACTTTTCGAAGTATGGTGAAGTGACGGGCATCTCAATGAATCCTACCCGA
GGATATGCCTTTATCGACTACCGCACCCATGAGTGCGTTCAGCGTGCTTT
GAGGTAAATTTTATTTTGGCGTTTTTGCCAGGGGGTCAGGGTGTGTAATA
GCAACCGGGAGTTAACAAATAGTTATTTGAGGCAGTGATGTTGTTGTTGT
TGTTGTTGTTGTTGTTTCTCGCATTCAGCGCATTGGTTGCCAACCCGAAA
ATAACTACTTTACACGGTGGCCAATCCCGCTCGTGGTTAGCCTTGAAAGC
ATATAAACGCTGGTTTGAATCCCGTCTCAACGGTGAATTTGTACACGAAA
AATCTCGTTTCCTTTGGTTATAATTAAGGCGTTTTCTCTCACCGTATGTT
TTCATGCTGGATGTTGCGTATGATGTATGGCAGCACAAAGGAACACGTTG
TCAACCGCAAGCTGCTAGTGGTCGAAGAGCGGCACTCGCCAATCGTACAA
CGGAACTCCAGGGGTGAGCATGGGTTTAGGCTTGAGTATCGATAAGGCAA
GCAGACAAACGGTAAATTTTATCGAATGCCGGATTGCCGAGTGCTGGGGA
TGCCAAGCCTCGAGATCTCTTCCGCGCGAGCTTGACGTCCGACACTAATC
CCCTATTTTTAACACTCATTTACGTCGTCGCTGCATCTCTGCTAGTACCT
CATTCCTTGAGATCACTCGCGTGAGAATATTGCTCGATACATTCGTACGT
ATGAAGACTGTAGCTGCGGTTAAACCCGTTTTTCAAATGGAAGCATCCAA
CTATTTGTTTCTCGTCCGCCTTGATGGCTCAACGAGGCGTTAAGTTCACG
CAATTGTTGCCCCTTCGACGATTTGTCCCAACCTAGTGTAGATTATCCTA
AAACTATCGCGTTGACCTTCTCTATCCTGCCTCAGATCATTCCGGTAGGG
GAGGCCGCAACGGACCTCGTGGGCGCGGTATGGGCGGCCGGGATGGCAGG
TACGGTTTGTGTTGACAAATCCAGTTGATGTTTCGAACTCCTGAGTCTAC
GTAAAATGATCGGAACGAGGGGTCTATGTGATCGCTTGTCGTGAAGGGGG
TGTCTGAGCCTGAATCTTAATATACTATGATGTAATAAGATTTAAATTAT
TGATTAGTATAACGACAAATTCCAATTTTGTTTGTTCACGTGCTCGGCTT
TACACCGCTGTCTGTATGTGCGTGCTAGGGACGGCGAACGCAGCGACCGT
CGTTCTATAGGTGGGCGAGGGGGACGCAGCGGGGTGGGTAGGGATCACCG
TGCTGATTCCAAAGATGGCGGTTACAAACCGAGAGGACGGGCAATGCCGA
CCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig11956:1172..6126-

>mRNA_H-elongata_contig11956.1505.1 ID=mRNA_H-elongata_contig11956.1505.1|Name=mRNA_H-elongata_contig11956.1505.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3426bp|location=Sequence derived from alignment at H-elongata_contig11956:1172..6126- (Himanthalia elongata Himel1 dioecious)
ATGGGGCAGGAGCCGGTTTCTGGCCTCTCTGATATACGCACCAAAATCGA
GCACCTCGGCCTGGGAGGTGCCATGGTCGATCTAGGCTGCGGTTCTGTTG
ACGCCCAGCCTTCCGAAGGAGATGGGGCAGGAGCCGGTTTCTGGCCTCTC
TGATATACGCACCAAAATCGAGCACCTCGGCCTGGGAGGTGCCATGGTCG
ATCTAGGCTGCGGTTCTGTTGACGCCCAGCCTTCCGAAGGAGGCGGGGTG
CTTCTAATGGTGACTGGGTCTATTACCATATCTGGTATGGACCCTCGGCA
GTTTTGCCAAACATTCTTCCTTGCGAGGCAATTTCAAGACACAGATCGTC
ACAACTACTTCGTTCGAAATGATATATTTCGCTTCTTAGACACTCTTCCA
GAAGTCGTCCAGGCGGGGTGCTTCTAATGGTGACTGGGTCTATTACCATA
TCTGGTATGGACCCTCGGCAGTTTTGCCAAACATTCTTCCTTGCGAGGCA
ATTTCAAGACACAGATCGTCACAACTACTTCGTTCGAAATGATATATTTC
GCTTCTTAGACACTCTTCCAGAAGTCGTCCAGGCTGCAATCGTCTCCCGA
GAAGAGGTGGAGGGAGCTCCCGGTTGCTCGGATACTGCTGCTGCCGCCAA
TGTGGGCCAGGGGTTGGGAGGTTGGGAGCACCCGGGTGCTGCCACGATGG
ACGCTGACTCGGAAGCTCCTGTAGTCTCTGAGGCTGCAATCGTCTCCCGA
GAAGAGGTGGAGGGAGCTCCCGGTTGCTCGGATACTGCTGCTGCCGCCAA
TGTGGGCCAGGGGTTGGGAGGTTGGGAGCACCCGGGTGCTGCCACGATGG
ACGCTGACTCGGAAGCTCCTGTAGTCTCTGAGGCTCCCACGCTCGCCTCC
GCCTCAGTAGCAAACCCCACGACTGTTTCAGACGTGACCCCGGCTTCGGC
TGACATAGTGGATGGTGTAGCACCCCATCCAGAGTCCCAGGTGGCAGCTC
CCTTCTCGGCGTCCCCAACTGTTGCGGTGGAGACTGCCCCGGCCGCGGCC
GTTAATGTTCCTCTAGCTATCGTTGGGGACAGGAAAGCTATTGCTGCCGG
TTCCGGGGGTGTGGTAGAGGCGTCAGAGTTGGACAACGGGGTGGTGGGCA
AAGCTCCCACGGGGAAGGCTCCCACGCTCGCCTCCGCCTCAGTAGCAAAC
CCCACGACTGTTTCAGACGTGACCCCGGCTTCGGCTGACATAGTGGATGG
TGTAGCACCCCATCCAGAGTCCCAGGTGGCAGCTCCCTTCTCGGCGTCCC
CAACTGTTGCGGTGGAGACTGCCCCGGCCGCGGCCGTTAATGTTCCTCTA
GCTATCGTTGGGGACAGGAAAGCTATTGCTGCCGGTTCCGGGGGTGTGGT
AGAGGCGTCAGAGTTGGACAACGGGGTGGTGGGCAAAGCTCCCACGGGGA
AGGTGGCTTCCATCGCAACAGACGTTCCCGTCGTACATTCTCCAGAGAAG
GATAACGCCGTCCGTTCTGCGCCGACATCTCCCGTGTTGCCGCCACCTAC
GGCGGCAGCTTTACCAGTTGCCTCCCCCGCCCCGACCTCCGCCGCAGCCG
CTCCTTCAACGCCCATGACGTACGCCTCTCTGGCGAAATCTTGGGCGACC
ATCGCTGCCGTCGGCGGGGATGCTCCAGCCCCTCCCCTCTCGGTGGCCGG
GGGGGCTCCCGCCTCCTCTTCTTCCAGCCCCTCGGGTGCCGGTTCGGTGT
CCGCCAGTGGCAATGGAGCAACAGCGACACCCGCGAGTAACGGGGGTTGG
GGAATCTCTGATGTCGCTGCGGGGTTGAAGGTGGAGCAAGTTTCGGTTGG
CGACCGAGGACAGGCGTCCTCTCGTCCGTCCCCTTCGACCGGCAAGGTGG
CTTCCATCGCAACAGACGTTCCCGTCGTACATTCTCCAGAGAAGGATAAC
GCCGTCCGTTCTGCGCCGACATCTCCCGTGTTGCCGCCACCTACGGCGGC
AGCTTTACCAGTTGCCTCCCCCGCCCCGACCTCCGCCGCAGCCGCTCCTT
CAACGCCCATGACGTACGCCTCTCTGGCGAAATCTTGGGCGACCATCGCT
GCCGTCGGCGGGGATGCTCCAGCCCCTCCCCTCTCGGTGGCCGGGGGGGC
TCCCGCCTCCTCTTCTTCCAGCCCCTCGGGTGCCGGTTCGGTGTCCGCCA
GTGGCAATGGAGCAACAGCGACACCCGCGAGTAACGGGGGTTGGGGAATC
TCTGATGTCGCTGCGGGGTTGAAGGTGGAGCAAGTTTCGGTTGGCGACCG
AGGACAGGCGTCCTCTCGTCCGTCCCCTTCGACCGGCAAGAAGGGGCTAC
GTCCGCACATCCCCCACCACGCATCCCCCGCGGTGGCTGCCTCTGCCGCC
GCCGCTCGTGAGGCTGCCGCAGCCGGGAATGGGGAAATCCTTCCGGCAAC
TTCTCTTTTCGTAAGAAAGAAGGGGCTACGTCCGCACATCCCCCACCACG
CATCCCCCGCGGTGGCTGCCTCTGCCGCCGCCGCTCGTGAGGCTGCCGCA
GCCGGGAATGGGGAAATCCTTCCGGCAACTTCTCTTTTCGTAAGAAAGGT
GGACATGACCATCGAAAAAGAAGATATGATTGTTCACTTTTCGAAGTATG
GTGAAGTGACGGGCATCTCAATGAATCCTACCCGAGGATATGCCTTTATC
GACTACCGCACCCATGAGTGCGTTCAGCGTGCTTTGAGGTGGACATGACC
ATCGAAAAAGAAGATATGATTGTTCACTTTTCGAAGTATGGTGAAGTGAC
GGGCATCTCAATGAATCCTACCCGAGGATATGCCTTTATCGACTACCGCA
CCCATGAGTGCGTTCAGCGTGCTTTGAGCACAAAGGAACACGTTGTCAAC
CGCAAGCTGCTAGTGGTCGAAGAGCGGCACTCGCCAATCGTACAACGGAA
CTCCAGGGGTGAGCATGGGTTTAGGCTTGACACAAAGGAACACGTTGTCA
ACCGCAAGCTGCTAGTGGTCGAAGAGCGGCACTCGCCAATCGTACAACGG
AACTCCAGGGGTGAGCATGGGTTTAGGCTTGAGGGAGGCCGCAACGGACC
TCGTGGGCGCGGTATGGGCGGCCGGGATGGCAGGTACGGTTTGGGAGGCC
GCAACGGACCTCGTGGGCGCGGTATGGGCGGCCGGGATGGCAGGTACGGT
TTCGACCGTCGTTCTATAGGTGGGCGAGGGGGACGCAGCGGGGTGGGTAG
GGATCACCGTGCTGATTCCAAAGATGGCGGTTACAAACCGAGAGGACGGG
CAATGCCGACCTAGCGACCGTCGTTCTATAGGTGGGCGAGGGGGACGCAG
CGGGGTGGGTAGGGATCACCGTGCTGATTCCAAAGATGGCGGTTACAAAC
CGAGAGGACGGGCAATGCCGACCTAG
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