prot_H-elongata_contig11956.1505.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig11956.1505.1
Unique Nameprot_H-elongata_contig11956.1505.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length571
Homology
BLAST of mRNA_H-elongata_contig11956.1505.1 vs. uniprot
Match: D7FJI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJI2_ECTSI)

HSP 1 Score: 363 bits (932), Expect = 2.770e-115
Identity = 305/593 (51.43%), Postives = 338/593 (57.00%), Query Frame = 0
Query:    3 QEPVSGLSDIRTKIEHLGLGGAMVDLGCGSVDAQPSEGGGVLLMVTGSITISGMDPRQFCQTFFLARQFQDTDRHNYFVRNDIFRFLDTLPEVVQAAIVSREEVEGAPGCS--DTAAAANVGQGLGGWEHPGAATMDADSEAPVVSEAPTLASASVANPTTVSDVTPASADIVDGVAPHPESQVAAPFSASPTVAVETAPAAAVN--VPLAIVGDRKAIAAGSGGVVEASELDNGVVGKAPTGKVASIATDVPVVHSPEKDNAVRSAPTSPVLPPPTAAALPVASPAPTSAAAAPSTP----------------MTYASLAKSWATIAAVGGDAPAPPLSVAGGAPXXXXXXXXXXXXXXXXXXXATATPASNGGWGISDVAAG--LKVEQVSVGDRG----QASSRPSPSTGK--KGLRPHIPHHASPAVAASAXXXREAAAAGNGEILPATSLFVRKVDMTIEKEDMIVHFSKYGEVTGISMNPTRGYAFIDYRTHECVQRALSTKEHVVNRKLLVVEERHSPIVQRNSRGEHGFRLEGGRNGPRGRGMGGRDXXXXXXXXXXXXXXXXXXVGRDHRADSKDGGYKPRGRA 567
            +EPVSGL DI+ KI+HLGLGGA VDLGCGSVDAQPSEGGGVLLMVTGSITI+  DPRQFCQTFFLARQ QD DRHNYFVRNDIFRFLD LPEVVQAA+ +R+E +G+   S    A  ++  + +G      A T     + PV    P   +AS      V + +P +  +  G AP  ESQVAA   A                  P A+ G                 LDNG   K P  KV                      P SPV      A+ P  S   T  AAA                    MTYASLAKSWAT+AA  G              XXXXXXXXXXXXXXXXXXX         G     VA G  L +EQ  VG  G    Q  SRPS +TGK  KG   +IPHHASPAVAASAXXX EAAAAGNGEI+PATSLFVRKVDMTI++++MI HFS YGEVTGISMNPTRGYAFIDYRT+ECVQ ALSTKEH VNRKLLVVEERHSP+VQRNSRGEHG    GGR G              X              GRD     KDGGY+ RGRA
Sbjct:   52 EEPVSGLEDIKAKIKHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIANTDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEVVQAALKARDEEDGSTARSALPPAEESSKPESVGEETVAAAVTQVHVQDTPV----PQQTTASPVATAAVPESSPPA--MAAGAAPPSESQVAASTDAXXXXXXXXXXXXXXXXXAPAAVAG-----------------LDNGSADKTPAAKV----------------------PPSPV-----GASTPAES---TETAAAEXXXXXXXXXXXXXXXXXXXMTYASLAKSWATVAADSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG----AVAGGAVLTIEQP-VGQPGPGVVQHGSRPSSATGKGQKGPGAYIPHHASPAVAASAXXXXEAAAAGNGEIMPATSLFVRKVDMTIDRDEMIAHFSAYGEVTGISMNPTRGYAFIDYRTNECVQIALSTKEHYVNRKLLVVEERHSPMVQRNSRGEHG----GGRGGX----XXXXXRVSSXRDGRDGDRRPTGRGGRDRPDGPKDGGYRARGRA 578          
BLAST of mRNA_H-elongata_contig11956.1505.1 vs. uniprot
Match: A0A6H5L110_9PHAE (NTF2 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L110_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 3.970e-48
Identity = 88/106 (83.02%), Postives = 96/106 (90.57%), Query Frame = 0
Query:    3 QEPVSGLSDIRTKIEHLGLGGAMVDLGCGSVDAQPSEGGGVLLMVTGSITISGMDPRQFCQTFFLARQFQDTDRHNYFVRNDIFRFLDTLPEVVQAAIVSREEVEG 108
            +EPVSGL DI+ KI+HLGLGGA VDLGCGSVDAQPSEGGGVLLMVTGSITI+  DPRQFCQTFFLARQ QD DRHNYFVRNDIFRFLD LPEVVQAA+ +R+E +G
Sbjct:   52 EEPVSGLEDIKAKIKHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIANTDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEVVQAALKARDEEDG 157          
BLAST of mRNA_H-elongata_contig11956.1505.1 vs. uniprot
Match: A0A835Z9L7_9STRA (NTF2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9L7_9STRA)

HSP 1 Score: 122 bits (305), Expect = 3.670e-27
Identity = 62/108 (57.41%), Postives = 77/108 (71.30%), Query Frame = 0
Query:    3 QEPVSGLSDIRTKIEHLGLGGAMVDLGCGSVDAQPSEGGGVLLMVTGSITISGMDPRQFCQTFFLARQFQDTDRHNYFVRNDIFRFLDTLPEVVQAAIVSREEVEGAP 110
            ++PV+GL +I+ KI  LGL  A VDL CGSVDAQPS   G++LMVTGSI + G   RQF QTFFLA Q Q   RHNY V NDIFR LDT+P+V++AA+ +    + AP
Sbjct:   54 EDPVTGLENIKAKILSLGLADATVDLDCGSVDAQPSVDDGIILMVTGSIKLQGQRLRQFAQTFFLALQLQKNGRHNYVVMNDIFRLLDTIPDVLKAAVDAHATPDHAP 161          
BLAST of mRNA_H-elongata_contig11956.1505.1 vs. uniprot
Match: A0A835YRG6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRG6_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.850e-24
Identity = 58/98 (59.18%), Postives = 72/98 (73.47%), Query Frame = 0
Query:    3 QEPVSGLSDIRTKIEHLGLGGAMVDLGCGSVDAQPSEGGGVLLMVTGSITISGMDPRQFCQTFFLARQFQDTDRHNYFVRNDIFRFLDTLPEVVQAAI 100
            ++PV GL +I+ KI  LGL  A VDL CGSVD Q S+ G +LLMVTG+IT+ G  PRQF QTF LA   Q   RHN+FV ND+FR LDT+PEV++AA+
Sbjct:   51 EQPVMGLENIKEKIRGLGLADATVDLDCGSVDIQASQNGSILLMVTGAITLRGQAPRQFAQTFLLATHRQMDGRHNFFVLNDVFRLLDTIPEVLEAAL 148          
BLAST of mRNA_H-elongata_contig11956.1505.1 vs. uniprot
Match: D7FSS4_ECTSI (Poly(A)-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSS4_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 4.920e-16
Identity = 50/97 (51.55%), Postives = 68/97 (70.10%), Query Frame = 0
Query:  415 AAAAGNGEILPA--TSLFVRKVDMTIEKEDMIVHFSKYGEVTGISMNPTRGYAFIDYRTHECVQRALSTKEHVVNRKLLVVEERHSPIVQRNSRGEH 509
            AAAAG  +  PA  T+LFVRK+DM +++ED+I HFS +G+V  +SMNP+RGYAF+D  +H+ V RA+ T EH V RK L VE +  P   + SRG +
Sbjct:  305 AAAAGWRQRDPAGPTTLFVRKIDMKVDREDVIKHFSIFGQVLSVSMNPSRGYAFVDLDSHDAVLRAVRTAEHTVGRKTLQVEVKKEPATPK-SRGNN 400          
BLAST of mRNA_H-elongata_contig11956.1505.1 vs. uniprot
Match: A0A6H5L5V4_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5V4_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 7.400e-16
Identity = 47/92 (51.09%), Postives = 65/92 (70.65%), Query Frame = 0
Query:  415 AAAAGNGEILPA--TSLFVRKVDMTIEKEDMIVHFSKYGEVTGISMNPTRGYAFIDYRTHECVQRALSTKEHVVNRKLLVVEERHSPIVQRN 504
            AAAAG  +  PA  T+LFVRK+DM +++ED+I HFS +G+V  +SMNP+RGYAF+D  +H+ V RA+ T EH V RK L VE +  P   ++
Sbjct:  424 AAAAGWRQRDPAGPTTLFVRKIDMKVDREDVIKHFSSFGKVLSVSMNPSRGYAFVDLDSHDAVLRAVRTAEHTVGRKTLQVEVKKEPATPKS 515          
BLAST of mRNA_H-elongata_contig11956.1505.1 vs. uniprot
Match: A0A7S2GVT4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GVT4_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.370e-13
Identity = 46/98 (46.94%), Postives = 60/98 (61.22%), Query Frame = 0
Query:    3 QEPVSGLSDIRTKIEHLGLGGAMVDLGCGSVDAQPSEGGGVLLMVTGSITISGMDPRQFCQTFFLARQFQDTDRHN--YFVRNDIFRFLDTLPEVVQA 98
            ++PV G+  I+ KI   G   A+ +L  GS+DAQPS+ GGVLLMVTG+IT     PRQF Q+FFLA Q      +   YFV ND FR +   P V+ +
Sbjct:   56 EDPVMGMEQIKAKIAERGCLNAIFNLEHGSIDAQPSKDGGVLLMVTGTITKKNAPPRQFVQSFFLAEQQNSIKTYPPAYFVLNDTFRIVTPPPNVINS 153          
BLAST of mRNA_H-elongata_contig11956.1505.1 vs. uniprot
Match: A0A7S3Y115_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y115_HETAK)

HSP 1 Score: 77.4 bits (189), Expect = 4.200e-13
Identity = 47/93 (50.54%), Postives = 62/93 (66.67%), Query Frame = 0
Query:    4 EPVSGLSDIRTKIEHLGLGGAMVDLGCGSVDAQPSEGGGVLLMVTGSITIS-GMDPRQ-FCQTFFLA-----RQFQDTDRHNYFVRNDIFRFL 89
            EPV+G+  I+TKI  LGL GA V++G GSVDAQ S  GGV+++VTG+I ++ G  P Q F QTFFLA     +Q +     +YFV ND  RF+
Sbjct:   50 EPVTGIEAIKTKITGLGLEGAKVEVGQGSVDAQASRDGGVVMLVTGTIALATGQQPAQAFAQTFFLAPQVVVQQGRTAPVPSYFVLNDTLRFV 142          
BLAST of mRNA_H-elongata_contig11956.1505.1 vs. uniprot
Match: A0A7S2RRZ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RRZ8_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 8.250e-13
Identity = 46/101 (45.54%), Postives = 57/101 (56.44%), Query Frame = 0
Query:    3 QEPVSGLSDIRTKIEHLGLGGAMVDLGCGSVDAQPSEGGGVLLMVTGSITISGMDPRQFCQTFFLARQFQDTDRH-NYFVRNDIFRFLDTLPEVVQAAIVS 102
            Q PV G+  I+  I   G    ++DL  GSVDAQPS+ GGVLL+VTG +T     PRQF QTFFLA Q        +Y++ ND  R LD +     AA  S
Sbjct:   97 QGPVGGMQKIKEVIRQRGSEHWVLDLESGSVDAQPSKDGGVLLLVTGILTTQNQPPRQFVQTFFLASQASTNGTSASYYILNDTLRILDPVHPPPAAAAAS 197          
BLAST of mRNA_H-elongata_contig11956.1505.1 vs. uniprot
Match: A0A6U5KB31_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5KB31_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.500e-11
Identity = 44/93 (47.31%), Postives = 59/93 (63.44%), Query Frame = 0
Query:    4 EPVSGLSDIRTKIEHLGLGGAMVDLGCGSVDAQPSEGGGVLLMVTGSITISGMD----PRQFCQTFFLARQFQDTDRHNYFVRNDIFRFLDTL 92
            EPV G  +IR+    L L  A VDL  GS+DAQ S+ GGVL++VTG IT+  +     PR F  TFFL+R+     + +++V NDIFRFLD +
Sbjct:   68 EPVVGSDEIRSTFSSLRLSDAQVDLEDGSLDAQDSKEGGVLIVVTGKITLMDVQEFAYPRHFVHTFFLSRE----GKKHFYVLNDIFRFLDNM 156          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11956.1505.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJI2_ECTSI2.770e-11551.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L110_9PHAE3.970e-4883.02NTF2 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A835Z9L7_9STRA3.670e-2757.41NTF2 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A835YRG6_9STRA1.850e-2459.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FSS4_ECTSI4.920e-1651.55Poly(A)-binding protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5V4_9PHAE7.400e-1651.09RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2GVT4_9STRA3.370e-1346.94Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3Y115_HETAK4.200e-1350.54Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2RRZ8_9STRA8.250e-1345.54Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A6U5KB31_9STRA2.500e-1147.31Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 428..494
e-value: 4.5E-11
score: 52.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 429..481
e-value: 9.0E-8
score: 31.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 427..497
score: 11.861
IPR002075Nuclear transport factor 2PFAMPF02136NTF2coord: 2..88
e-value: 4.7E-12
score: 46.5
NoneNo IPR availableGENE3D3.10.450.50coord: 1..92
e-value: 1.5E-18
score: 69.1
NoneNo IPR availablePANTHERPTHR10693:SF20AT27578Pcoord: 3..552
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 425..498
e-value: 5.7E-13
score: 50.8
IPR039539Ras GTPase-activating protein-binding proteinPANTHERPTHR10693RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEINcoord: 3..552
IPR018222Nuclear transport factor 2, eukaryotePROSITEPS50177NTF2_DOMAINcoord: 32..88
score: 15.381
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 424..529
IPR032710NTF2-like domain superfamilySUPERFAMILY54427NTF2-likecoord: 6..88

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11956contigH-elongata_contig11956:1172..6126 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11956.1505.1mRNA_H-elongata_contig11956.1505.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig11956 1172..6126 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig11956.1505.1 ID=prot_H-elongata_contig11956.1505.1|Name=mRNA_H-elongata_contig11956.1505.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=571bp
MGQEPVSGLSDIRTKIEHLGLGGAMVDLGCGSVDAQPSEGGGVLLMVTGS
ITISGMDPRQFCQTFFLARQFQDTDRHNYFVRNDIFRFLDTLPEVVQAAI
VSREEVEGAPGCSDTAAAANVGQGLGGWEHPGAATMDADSEAPVVSEAPT
LASASVANPTTVSDVTPASADIVDGVAPHPESQVAAPFSASPTVAVETAP
AAAVNVPLAIVGDRKAIAAGSGGVVEASELDNGVVGKAPTGKVASIATDV
PVVHSPEKDNAVRSAPTSPVLPPPTAAALPVASPAPTSAAAAPSTPMTYA
SLAKSWATIAAVGGDAPAPPLSVAGGAPASSSSSPSGAGSVSASGNGATA
TPASNGGWGISDVAAGLKVEQVSVGDRGQASSRPSPSTGKKGLRPHIPHH
ASPAVAASAAAAREAAAAGNGEILPATSLFVRKVDMTIEKEDMIVHFSKY
GEVTGISMNPTRGYAFIDYRTHECVQRALSTKEHVVNRKLLVVEERHSPI
VQRNSRGEHGFRLEGGRNGPRGRGMGGRDGRYGFDRRSIGGRGGRSGVGR
DHRADSKDGGYKPRGRAMPT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR002075NTF2
IPR012677Nucleotide-bd_a/b_plait_sf
IPR039539Ras_GTPase_bind_prot
IPR018222Nuclear_transport_factor_2_euk
IPR035979RBD_domain_sf
IPR032710NTF2-like_dom_sf