mRNA_H-elongata_contig119453.1497.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119453.1497.1
Unique NamemRNA_H-elongata_contig119453.1497.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig119453.1497.1 vs. uniprot
Match: A0A6H5L5Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Z3_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 4.540e-59
Identity = 88/134 (65.67%), Postives = 106/134 (79.10%), Query Frame = 1
Query:   19 ADHSNKVNKAIHLACIWPILWTTLALMTHVPIGKLTPDILKSLPLREEAWNLHLGLGIVLVYVIVYCVMDPFAGGLASLLVITSYLTANLWMADGGSTALVGGVNVAGWLAQFYGHFVHEGRSPALLDNLFQVR 420
            ADHSN+VNK IHL CIWPI+WT  ALMT    GKL  ++L+ LPLR+EAWNLHLG  +V+VY+ VY VMDPFAGG+ASL++ ++YLT+NLWMA GGS  L    ++  WLAQFYGH  HEGR+PALLDNLFQ R
Sbjct:   15 ADHSNRVNKFIHLLCIWPIIWTGCALMTQCSFGKLPSEVLEQLPLRDEAWNLHLGTPVVMVYIFVYLVMDPFAGGVASLMMASTYLTSNLWMAGGGSARLATAAHIGCWLAQFYGHAAHEGRAPALLDNLFQAR 148          
BLAST of mRNA_H-elongata_contig119453.1497.1 vs. uniprot
Match: D7FJ56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ56_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 6.380e-56
Identity = 84/131 (64.12%), Postives = 101/131 (77.10%), Query Frame = 1
Query:   25 HSNKVNKAIHLACIWPILWTTLALMTHVPIGKLTPDILKSLPLREEAWNLHLGLGIVLVYVIVYCVMDPFAGGLASLLVITSYLTANLWMADGGSTALVGGVNVAGWLAQFYGHFVHEGRSPALLDNLFQV 417
            HSN+VNK IHL CIWPI+WT  ALMT    GKL  ++L+ LPLR+EAWNLHLG  +V+VY+ VY VMDPFAGG+AS ++ ++YLT NLWMA GGS  L    ++  WLAQFYGH  HEGR+PALLDNLFQ 
Sbjct:   23 HSNRVNKFIHLLCIWPIIWTGCALMTQCSFGKLPAEVLEQLPLRDEAWNLHLGTPVVMVYIFVYLVMDPFAGGVASFMMASTYLTTNLWMAGGGSARLATAAHIGCWLAQFYGHAAHEGRAPALLDNLFQA 153          
BLAST of mRNA_H-elongata_contig119453.1497.1 vs. uniprot
Match: A0A835ZKQ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKQ2_9STRA)

HSP 1 Score: 102 bits (254), Expect = 2.100e-24
Identity = 62/144 (43.06%), Postives = 82/144 (56.94%), Query Frame = 1
Query:   19 ADHSNKVNKAIHLACIWPILWTTLALMTHV-PIGKLTPDILKSLPLREEAWNLHLGLGIVLVYVIVYCVMDPFAGGLASLLVITSYLTANLWMA--------DGG--STALVGGVNVAGWLAQFYGHFVHEGRSPALLDNLFQV 417
            A H N VN+AIH+ CIWPI+WT  AL   + P   +   ++   P   +A  LH+G  I   YV++Y +M+P  G  A+LLV+   L+AN + A        D G  + A V   +V  WLAQFYGH  HE R PAL+DNLFQ 
Sbjct:   18 AYHRNTVNEAIHMVCIWPIVWTMFALFRMLGPTAPVPHALVDMAPALGDALVLHIGWLIAAAYVLLYPLMEPRMGTAAALLVVCCLLSANQFAAWADRQPESDTGLSAAAYVAVAHVVCWLAQFYGHAAHEKRKPALMDNLFQA 161          
BLAST of mRNA_H-elongata_contig119453.1497.1 vs. uniprot
Match: A0A4Y7T5X7_9AGAR (DUF962-domain-containing protein n=1 Tax=Coprinellus micaceus TaxID=71717 RepID=A0A4Y7T5X7_9AGAR)

HSP 1 Score: 87.8 bits (216), Expect = 6.020e-19
Identity = 55/131 (41.98%), Postives = 73/131 (55.73%), Query Frame = 1
Query:   19 ADHSNKVNKAIHLACIWPILWTTLALMTHVPIGKLTPDILKSL-PLREEAWNLHLGLGIVLVYVIVYCVMDPFAGGLASLLVITSYLTANLWMADGGSTALVGGVNVAGWLAQFYGHFVHEGRSPALLDNL 408
            A HSNKVN AIH+ C+  ILW+  AL+   P+ +  P I   L PL   A  L++G          Y +++PFA  L    +  S LTA  +   G    + G ++V  W+AQFYGH VHE R+PALLDNL
Sbjct:   16 AYHSNKVNVAIHITCVPLILWSAYALVAPFPVPEFFPKIHYVLSPLPPVAAALYIGY---------YFLLEPFAALLYVPQLTLSLLTATAFSYRGDHNLIAGALHVFTWIAQFYGHGVHEKRAPALLDNL 137          
BLAST of mRNA_H-elongata_contig119453.1497.1 vs. uniprot
Match: A0A4Q2DMD9_9AGAR (Uncharacterized protein n=1 Tax=Candolleomyces aberdarensis TaxID=2316362 RepID=A0A4Q2DMD9_9AGAR)

HSP 1 Score: 85.9 bits (211), Expect = 3.960e-18
Identity = 52/131 (39.69%), Postives = 74/131 (56.49%), Query Frame = 1
Query:   19 ADHSNKVNKAIHLACIWPILWTTLALMTHVPIGKLTPDILKSLPLREE-AWNLHLGLGIVLVYVIVYCVMDPFAGGLASLLVITSYLTANLWMADGGSTALVGGVNVAGWLAQFYGHFVHEGRSPALLDNL 408
            A HSNKVN  IH+ C+  ILW+ LAL +  P+    P I    P+ E   ++L+    +  +Y+  Y +++PFA  L    +  S LTA  +        + GG++   W+AQFYGH VHE R+PALLDNL
Sbjct:   17 AYHSNKVNVLIHVICVPIILWSALALFSPFPVPAFFPKI--HYPINEYLVFDLNWPAVVASLYIGYYFLLEPFAALLYVPQLTLSLLTATAFSYRADHVLIAGGLHAFSWVAQFYGHGVHERRAPALLDNL 145          
BLAST of mRNA_H-elongata_contig119453.1497.1 vs. uniprot
Match: A0A553PRT3_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553PRT3_TIGCA)

HSP 1 Score: 85.1 bits (209), Expect = 9.080e-18
Identity = 57/147 (38.78%), Postives = 81/147 (55.10%), Query Frame = 1
Query:   25 HSNKVNKAIHLACIWPILWTTLALM--------THVPIGKLTPDILKSLPLREEAWNLHLGLGIVLVYVIVYCVMDPFAGGLASLLVITSY-----LTANLWMADG---GSTALVGGVNVAGWLAQFYGHFVHEGRSPALLDNLFQV 417
            H+N+VN AIHL C+WPIL T + L+        TH+P+    P  L++LP   +A  L+L L + ++Y++ Y  M+P AGGL +L+V   Y     + +  W   G      A V  +    W  QF GH V EGR+PALLD+L Q 
Sbjct:   21 HANRVNVAIHLVCVWPILATAMLLLQLSSYCFLTHLPM----PHALQNLPFGLQA-PLNLALVMAIIYIVSYFAMEPIAGGLGALMVAGLYFGTWKMVSEDWYVGGYPIWQAAWV--IFFLAWTFQFIGHGVFEGRAPALLDSLDQA 160          
BLAST of mRNA_H-elongata_contig119453.1497.1 vs. uniprot
Match: A0A5C3L200_9AGAR (DUF962-domain-containing protein n=1 Tax=Coprinopsis marcescibilis TaxID=230819 RepID=A0A5C3L200_9AGAR)

HSP 1 Score: 83.2 bits (204), Expect = 5.080e-17
Identity = 50/130 (38.46%), Postives = 72/130 (55.38%), Query Frame = 1
Query:   19 ADHSNKVNKAIHLACIWPILWTTLALMTHVPIGKLTPDILKSLPLREEAWNLHLGLGIVLVYVIVYCVMDPFAGGLASLLVITSYLTANLWMADGGSTALVGGVNVAGWLAQFYGHFVHEGRSPALLDNL 408
            A HSNKVN  IH+ C+  ILWT  AL   +P  +  PDI   L  +   ++L+    +  +Y+  Y +++P A  L    ++ S LTA  +        L G ++   W+AQFYGH +HE R+PALLDNL
Sbjct:   17 AYHSNKVNVLIHIICVPLILWTAFALTAPLPTLRFFPDIHYELH-KYLVFDLNWPAIVAALYIGYYLILEPVAAILYVPQMVLSVLTATAFSYRDDHVLLSGLLHAVSWIAQFYGHGIHEKRAPALLDNL 145          
BLAST of mRNA_H-elongata_contig119453.1497.1 vs. uniprot
Match: W4GGH2_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GGH2_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.950e-16
Identity = 52/133 (39.10%), Postives = 78/133 (58.65%), Query Frame = 1
Query:   25 HSNKVNKAIHLACIWPILWTTLALM-THVPIGKLTPDILKSLPLREEAWNLHLGLGIVLVYVIVYCVMDPFAGGLASLLVITSYLTANLWMADGGSTA------LVGGVNVAGWLAQFYGHFVHEGRSPALLD 402
            HS+  NK +HL CIWPIL + + L+ T  P      D+ ++L     A    +G   VL+YV+ Y V+DP+AG LA+ L+++ Y+ +N+ +AD  +        L  G++V  W+ QF GH V E R+PALLD
Sbjct:   28 HSDPTNKTLHLLCIWPILLSAIFLLCTTAPFV----DVAQALHPYVVANAALVG---VLIYVLWYIVLDPYAGTLAAALIVSMYVWSNVVIADAVAATGESPWRLALGIHVTAWIIQFIGHGVFEKRAPALLD 153          
BLAST of mRNA_H-elongata_contig119453.1497.1 vs. uniprot
Match: A0A8J2JI70_9HEXA (Hypothetical protein n=2 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2JI70_9HEXA)

HSP 1 Score: 80.9 bits (198), Expect = 3.200e-16
Identity = 53/139 (38.13%), Postives = 74/139 (53.24%), Query Frame = 1
Query:   25 HSNKVNKAIHLACIWPILWTTLALMTHVPIGKLTPDILKSLPLREEAWNLHLGLGIVLVYVIVYCVMDPFAGGLASLLVITSYLTANLWMADGGST--------ALVGGVNVAGWLAQFYGHFVHEGRSPALLDNLFQV 417
            H +K+NK IH+ C+WPILW+ +    + PI  + PD L +L     A  L+L   + L Y   Y +M+  AG  A+ LV  S L +  +     +         ALV  ++V  W+AQF GH   EGR+PALLDNL Q 
Sbjct:   17 HHDKINKLIHIVCVWPILWSAMVFCQYAPI--VAPDSLNNLV--SFAHPLNLAFIVALFYATCYILMEQKAGTFAAGLVFLSLLFSRSFFLTAEAKYGHPAWVIALV--IHVGCWIAQFVGHGKFEGRAPALLDNLVQA 149          
BLAST of mRNA_H-elongata_contig119453.1497.1 vs. uniprot
Match: A0A3M7N857_9EURO (Uncharacterized protein (Fragment) n=1 Tax=Chaetothyriales sp. CBS 132003 TaxID=2249419 RepID=A0A3M7N857_9EURO)

HSP 1 Score: 83.6 bits (205), Expect = 5.190e-16
Identity = 58/134 (43.28%), Postives = 77/134 (57.46%), Query Frame = 1
Query:   34 KVNKAIHLACIWPILWTTLALMTHVPIGKLTPDILKSLPLREEAWNLHLGLGIV--LVYVIVYCVMDPFAGGLASLLVITSYLTANLWMADGGSTALVG--GVNVAGWLAQFYGHFVHEGRSPALLDNLFQVRF 423
            KVN AIH+ C+  IL T + L T+   G L P     LP   +   L   LG++  LVY ++Y +++P AGGL S+L++T     N      G TA     G++VA W+AQF GH   EGR+PALLDNLFQ  F
Sbjct:    3 KVNIAIHITCVPVILLTAILLCTNT--GPLYP-----LPEYLQVPYLPPNLGVIVSLVYAVLYILLEPVAGGLLSVLLLTGTAYVNHLAGKYGMTANYWALGIHVASWIAQFIGHGKFEGRAPALLDNLFQAFF 129          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119453.1497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5Z3_9PHAE4.540e-5965.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJ56_ECTSI6.380e-5664.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZKQ2_9STRA2.100e-2443.06Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4Y7T5X7_9AGAR6.020e-1941.98DUF962-domain-containing protein n=1 Tax=Coprinell... [more]
A0A4Q2DMD9_9AGAR3.960e-1839.69Uncharacterized protein n=1 Tax=Candolleomyces abe... [more]
A0A553PRT3_TIGCA9.080e-1838.78Uncharacterized protein n=1 Tax=Tigriopus californ... [more]
A0A5C3L200_9AGAR5.080e-1738.46DUF962-domain-containing protein n=1 Tax=Coprinops... [more]
W4GGH2_9STRA2.950e-1639.10Uncharacterized protein n=5 Tax=Aphanomyces astaci... [more]
A0A8J2JI70_9HEXA3.200e-1638.13Hypothetical protein n=2 Tax=Allacma fusca TaxID=3... [more]
A0A3M7N857_9EURO5.190e-1643.28Uncharacterized protein (Fragment) n=1 Tax=Chaetot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119453contigH-elongata_contig119453:514..1244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.1
Seed ortholog evalue4.5e-44
Seed eggNOG ortholog2880.D7FJ56
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006629,GO:0006643,GO:0006665,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016042,GO:0030149,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046466,GO:0046519,GO:0046521,GO:0071704,GO:0097164,GO:0098827,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.sphingoid catabolic process
EggNOG OGsCOG4539@1,KOG3292@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionProtein of unknown function DUF962
Ec32 orthologEc-10_000180.1
Exons2
Model size423
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929698.9450705-CDS-H-elongata_contig119453:513..7331622929698.9450705-CDS-H-elongata_contig119453:513..733Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119453 514..733 +
1691679123.4536266-CDS-H-elongata_contig119453:513..7331691679123.4536266-CDS-H-elongata_contig119453:513..733Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119453 514..733 +
1622929698.9649603-CDS-H-elongata_contig119453:1041..12441622929698.9649603-CDS-H-elongata_contig119453:1041..1244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119453 1042..1244 +
1691679123.4694076-CDS-H-elongata_contig119453:1041..12441691679123.4694076-CDS-H-elongata_contig119453:1041..1244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119453 1042..1244 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119453.1497.1prot_H-elongata_contig119453.1497.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119453 514..1244 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119453.1497.1

>prot_H-elongata_contig119453.1497.1 ID=prot_H-elongata_contig119453.1497.1|Name=mRNA_H-elongata_contig119453.1497.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
RVRVSTADHSNKVNKAIHLACIWPILWTTLALMTHVPIGKLTPDILKSLP
LREEAWNLHLGLGIVLVYVIVYCVMDPFAGGLASLLVITSYLTANLWMAD
GGSTALVGGVNVAGWLAQFYGHFVHEGRSPALLDNLFQVRF
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mRNA from alignment at H-elongata_contig119453:514..1244+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119453.1497.1 ID=mRNA_H-elongata_contig119453.1497.1|Name=mRNA_H-elongata_contig119453.1497.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=731bp|location=Sequence derived from alignment at H-elongata_contig119453:514..1244+ (Himanthalia elongata Himel1 dioecious)
CGCGTCCGTGTTTCTACCGCAGACCACAGCAATAAAGTTAATAAGGCGAT TCACCTCGCCTGCATCTGGCCAATTTTATGGACAACGCTGGCGCTCATGA CCCATGTTCCGATCGGGAAGTTGACTCCAGATATACTGAAATCGCTTCCT CTGAGGGAAGAGGCTTGGAATCTCCATCTTGGATTAGGGATTGTGCTCGT TTACGTCATCGTCTACTGCGGTGAGTCCAACGTTTGGTAAAGAGAACAAA TTGTGAGCGACTTGATAGCCCCTTGACTAGTCTCTTTAGTGTACCCACCT CGTCGGCGAGGGACTATGTCGACTCTGGATAATGCCGTGTGGGTCTCCCT GGCCATGAGAGCATGATGGTGTCGGCCATGAGAGCATGATGGTGGCGGCC ATCCCTTACTAAATATTACATGGTCGCAAGAAATTCGACTCTATTACGCT CGACCCCATACGTTCGCTCGAAAGGTTTTACTATGCTTTTGTTACCCTTT ACGTTTTGCTAACCCTCATTGCATAAAGTGATGGACCCGTTTGCGGGGGG ACTAGCATCACTACTGGTTATCACTTCCTACCTCACGGCTAACTTATGGA TGGCCGATGGCGGCTCTACAGCGCTGGTTGGGGGCGTGAATGTGGCGGGA TGGCTCGCACAGTTTTACGGGCATTTCGTGCACGAGGGCAGGTCACCCGC ACTGTTAGACAACCTGTTCCAGGTGAGGTTT
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Coding sequence (CDS) from alignment at H-elongata_contig119453:514..1244+

>mRNA_H-elongata_contig119453.1497.1 ID=mRNA_H-elongata_contig119453.1497.1|Name=mRNA_H-elongata_contig119453.1497.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig119453:514..1244+ (Himanthalia elongata Himel1 dioecious)
CGCGTCCGTGTTTCTACCGCAGACCACAGCAATAAAGTTAATAAGGCGAT
TCACCTCGCCTGCATCTGGCCAATTTTATGGACAACGCTGGCGCTCATGA
CCCATGTTCCGATCGGGAAGTTGACTCCAGATATACTGAAATCGCTTCCT
CTGAGGGAAGAGGCTTGGAATCTCCATCTTGGATTAGGGATTGTGCTCGT
TTACGTCATCGTCTACTGCGCGCGTCCGTGTTTCTACCGCAGACCACAGC
AATAAAGTTAATAAGGCGATTCACCTCGCCTGCATCTGGCCAATTTTATG
GACAACGCTGGCGCTCATGACCCATGTTCCGATCGGGAAGTTGACTCCAG
ATATACTGAAATCGCTTCCTCTGAGGGAAGAGGCTTGGAATCTCCATCTT
GGATTAGGGATTGTGCTCGTTTACGTCATCGTCTACTGCGTGATGGACCC
GTTTGCGGGGGGACTAGCATCACTACTGGTTATCACTTCCTACCTCACGG
CTAACTTATGGATGGCCGATGGCGGCTCTACAGCGCTGGTTGGGGGCGTG
AATGTGGCGGGATGGCTCGCACAGTTTTACGGGCATTTCGTGCACGAGGG
CAGGTCACCCGCACTGTTAGACAACCTGTTCCAGGTGAGGTTTTGATGGA
CCCGTTTGCGGGGGGACTAGCATCACTACTGGTTATCACTTCCTACCTCA
CGGCTAACTTATGGATGGCCGATGGCGGCTCTACAGCGCTGGTTGGGGGC
GTGAATGTGGCGGGATGGCTCGCACAGTTTTACGGGCATTTCGTGCACGA
GGGCAGGTCACCCGCACTGTTAGACAACCTGTTCCAGGTGAGGTTT
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