mRNA_H-elongata_contig119338.1488.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119338.1488.1
Unique NamemRNA_H-elongata_contig119338.1488.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig119338.1488.1 vs. uniprot
Match: D8LE09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE09_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 5.340e-21
Identity = 39/55 (70.91%), Postives = 45/55 (81.82%), Query Frame = 1
Query:   13 DRRCADCGGPCADWASVSHGAFVCLNCAGHHRALGLHVAFTRSLTMDRWTGEENR 177
            + RCADCG PCADWASV+HG+FVCL CAG  R+LG+HV FTRSL MD+WT E  R
Sbjct:  362 NSRCADCGAPCADWASVAHGSFVCLKCAGQQRSLGMHVIFTRSLVMDKWTDESLR 416          
BLAST of mRNA_H-elongata_contig119338.1488.1 vs. uniprot
Match: A0A6H5K7B0_9PHAE (Arf-GAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7B0_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 6.770e-21
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 1
Query:   19 RCADCGGPCADWASVSHGAFVCLNCAGHHRALGLHVAFTRSLTMDRWTG 165
            RCADCG PCADWASV+HG+FVCL CAG HR+LG+ V FTRSL MD+WTG
Sbjct:  482 RCADCGAPCADWASVAHGSFVCLKCAGQHRSLGMQVIFTRSLVMDKWTG 530          
BLAST of mRNA_H-elongata_contig119338.1488.1 vs. uniprot
Match: Q01CE5_OSTTA (Arf GTPase activating protein n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=Q01CE5_OSTTA)

HSP 1 Score: 82.0 bits (201), Expect = 1.120e-16
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 1
Query:   13 DRRCADCGGPCADWASVSHGAFVCLNCAGHHRALGLHVAFTRSLTMDRWTGEE 171
            +R CADCGG   DWASV+HGAF+CL+C+G HR+LG+HV+F RS TMD W+ ++
Sbjct:   12 NRSCADCGGANPDWASVNHGAFLCLSCSGIHRSLGVHVSFVRSATMDSWSVDQ 64          
BLAST of mRNA_H-elongata_contig119338.1488.1 vs. uniprot
Match: C1E391_MICCC (Arf-GAP domain-containing protein (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E391_MICCC)

HSP 1 Score: 76.6 bits (187), Expect = 1.800e-16
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 1
Query:   13 DRRCADCGGPCADWASVSHGAFVCLNCAGHHRALGLHVAFTRSLTMDRWTGEENR 177
            ++ CADC     DWASV HG F+CLNC+G HR+LG+HV+F RS TMD WT  E R
Sbjct:   23 NQVCADCPTRNPDWASVKHGIFICLNCSGIHRSLGVHVSFVRSATMDTWTQAEAR 77          
BLAST of mRNA_H-elongata_contig119338.1488.1 vs. uniprot
Match: A0A7S0IGQ4_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0IGQ4_MICPS)

HSP 1 Score: 77.4 bits (189), Expect = 2.090e-16
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 1
Query:   13 DRRCADCGGPCADWASVSHGAFVCLNCAGHHRALGLHVAFTRSLTMDRWTGEENR 177
            ++ CADC     DWASV HG F+CLNC+G HR+LG+HV+F RS TMD WT  E R
Sbjct:   37 NQVCADCPARNPDWASVKHGIFICLNCSGIHRSLGVHVSFVRSATMDTWTKAEAR 91          
BLAST of mRNA_H-elongata_contig119338.1488.1 vs. uniprot
Match: A0A4P9Z5F0_9FUNG (Arf-GAP domain-containing protein n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9Z5F0_9FUNG)

HSP 1 Score: 76.6 bits (187), Expect = 2.370e-16
Identity = 29/53 (54.72%), Postives = 40/53 (75.47%), Query Frame = 1
Query:   13 DRRCADCGGPCADWASVSHGAFVCLNCAGHHRALGLHVAFTRSLTMDRWTGEE 171
            +R C DCG P   WASV+ G F C++C+G HRALG+HV+F RS+TMD+W  ++
Sbjct:   19 NRTCIDCGAPSPQWASVTLGTFFCIDCSGQHRALGVHVSFVRSITMDKWAPDQ 71          
BLAST of mRNA_H-elongata_contig119338.1488.1 vs. uniprot
Match: A0A1E3HWG2_9TREE (ADP-ribosylation factor GTPase-activating protein 1 n=2 Tax=Cryptococcus depauperatus TaxID=5208 RepID=A0A1E3HWG2_9TREE)

HSP 1 Score: 80.5 bits (197), Expect = 3.230e-16
Identity = 30/56 (53.57%), Postives = 42/56 (75.00%), Query Frame = 1
Query:   13 DRRCADCGGPCADWASVSHGAFVCLNCAGHHRALGLHVAFTRSLTMDRWTGEENRG 180
            ++ C DC  PC  WASVS+G F+CL C+G HR LG+H++F RS+TMD+W+ E+  G
Sbjct:   19 NKVCVDCSAPCPQWASVSYGIFICLECSGVHRGLGVHISFVRSITMDKWSDEQLGG 74          
BLAST of mRNA_H-elongata_contig119338.1488.1 vs. uniprot
Match: A0A2G4SQF8_RHIZD (Arf GTPase activating protein n=3 Tax=Rhizopus microsporus TaxID=58291 RepID=A0A2G4SQF8_RHIZD)

HSP 1 Score: 75.1 bits (183), Expect = 6.750e-16
Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 1
Query:   13 DRRCADCGGPCADWASVSHGAFVCLNCAGHHRALGLHVAFTRSLTMDRWTGEE 171
            +R C DC  P   WASVS+G F+CLNC+G HR+ G+H++F RS+TMD+W  ++
Sbjct:   16 NRLCFDCSAPNPQWASVSYGIFICLNCSGVHRSFGVHISFVRSITMDKWFDDQ 68          
BLAST of mRNA_H-elongata_contig119338.1488.1 vs. uniprot
Match: G7E0V5_MIXOS (Arf-GAP domain-containing protein n=1 Tax=Mixia osmundae (strain CBS 9802 / IAM 14324 / JCM 22182 / KY 12970) TaxID=764103 RepID=G7E0V5_MIXOS)

HSP 1 Score: 79.0 bits (193), Expect = 1.310e-15
Identity = 30/55 (54.55%), Postives = 42/55 (76.36%), Query Frame = 1
Query:   13 DRRCADCGGPCADWASVSHGAFVCLNCAGHHRALGLHVAFTRSLTMDRWTGEENR 177
            ++ C DC  P   WASVSHG ++CLNC+G HR+LG+H++F RSLTMD+W+  + R
Sbjct:   19 NKLCCDCKAPMPQWASVSHGTYICLNCSGVHRSLGVHISFVRSLTMDKWSEAQVR 73          
BLAST of mRNA_H-elongata_contig119338.1488.1 vs. uniprot
Match: A0A4D9D8B9_9STRA (Arf-GAP domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D8B9_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.380e-15
Identity = 31/55 (56.36%), Postives = 44/55 (80.00%), Query Frame = 1
Query:   13 DRRCADCGGPCADWASVSHGAFVCLNCAGHHRALGLHVAFTRSLTMDRWTGEENR 177
            ++ CADC  P   WASVS+G+F+CL+C+G HRALG+H++F RS+TMD WT ++ R
Sbjct:   19 NKVCADCPAPNPQWASVSYGSFICLDCSGQHRALGVHLSFVRSITMDSWTDKQIR 73          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119338.1488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE09_ECTSI5.340e-2170.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7B0_9PHAE6.770e-2177.55Arf-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
Q01CE5_OSTTA1.120e-1662.26Arf GTPase activating protein n=2 Tax=Ostreococcus... [more]
C1E391_MICCC1.800e-1660.00Arf-GAP domain-containing protein (Fragment) n=1 T... [more]
A0A7S0IGQ4_MICPS2.090e-1660.00Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A4P9Z5F0_9FUNG2.370e-1654.72Arf-GAP domain-containing protein n=1 Tax=Syncepha... [more]
A0A1E3HWG2_9TREE3.230e-1653.57ADP-ribosylation factor GTPase-activating protein ... [more]
A0A2G4SQF8_RHIZD6.750e-1652.83Arf GTPase activating protein n=3 Tax=Rhizopus mic... [more]
G7E0V5_MIXOS1.310e-1554.55Arf-GAP domain-containing protein n=1 Tax=Mixia os... [more]
A0A4D9D8B9_9STRA1.380e-1556.36Arf-GAP domain-containing protein n=2 Tax=Monodops... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119338contigH-elongata_contig119338:1484..1684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue2.2e-17
Seed eggNOG ortholog2880.D8LE09
EggNOG free text desc.GTPase activator activity
EggNOG OGsCOG5347@1,KOG0704@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929698.064092-CDS-H-elongata_contig119338:1483..16841622929698.064092-CDS-H-elongata_contig119338:1483..1684Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119338 1484..1684 -
1691679123.1050427-CDS-H-elongata_contig119338:1483..16841691679123.1050427-CDS-H-elongata_contig119338:1483..1684Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119338 1484..1684 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119338.1488.1prot_H-elongata_contig119338.1488.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119338 1484..1684 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119338.1488.1

>prot_H-elongata_contig119338.1488.1 ID=prot_H-elongata_contig119338.1488.1|Name=mRNA_H-elongata_contig119338.1488.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
NYIYDRRCADCGGPCADWASVSHGAFVCLNCAGHHRALGLHVAFTRSLTM
DRWTGEENRGGVSCLEK
back to top

mRNA from alignment at H-elongata_contig119338:1484..1684-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119338.1488.1 ID=mRNA_H-elongata_contig119338.1488.1|Name=mRNA_H-elongata_contig119338.1488.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig119338:1484..1684- (Himanthalia elongata Himel1 dioecious)
AATTATATATATGACAGACGATGTGCGGATTGTGGAGGGCCGTGCGCGGA TTGGGCGTCGGTTTCTCATGGGGCTTTCGTGTGCCTCAACTGCGCTGGGC ATCATCGCGCCCTCGGGCTGCACGTGGCCTTCACCAGGTCTCTCACCATG GACCGCTGGACGGGTGAGGAAAACCGTGGAGGCGTGTCTTGTCTCGAGAA G
back to top

Coding sequence (CDS) from alignment at H-elongata_contig119338:1484..1684-

>mRNA_H-elongata_contig119338.1488.1 ID=mRNA_H-elongata_contig119338.1488.1|Name=mRNA_H-elongata_contig119338.1488.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig119338:1484..1684- (Himanthalia elongata Himel1 dioecious)
AATTATATATATGACAGACGATGTGCGGATTGTGGAGGGCCGTGCGCGGA
TTGGGCGTCGGTTTCTCATGGGGCTTTCGTGTGCCTCAACTGCGCTGGGC
ATCATCGCGCCCTCGGGCTGCACGTGGCCTTCACCAGGTCTCTCACCATG
GACCGCTGGACGGGTGAGGAAAACCGTGGAGGCGTGTCTTGTCTCGAGAA
GAATTATATATATGACAGACGATGTGCGGATTGTGGAGGGCCGTGCGCGG
ATTGGGCGTCGGTTTCTCATGGGGCTTTCGTGTGCCTCAACTGCGCTGGG
CATCATCGCGCCCTCGGGCTGCACGTGGCCTTCACCAGGTCTCTCACCAT
GGACCGCTGGACGGGTGAGGAAAACCGTGGAGGCGTGTCTTGTCTCGAGA
AG
back to top