mRNA_H-elongata_contig11904.1472.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig11904.1472.1 vs. uniprot
Match: D7FWP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWP8_ECTSI) HSP 1 Score: 288 bits (736), Expect = 2.560e-89 Identity = 148/311 (47.59%), Postives = 206/311 (66.24%), Query Frame = 3
Query: 462 MIDEQPLQFMRLAGVAEAPGLHENVAQHCSMTFTSKNRLIFTQAKHSAELGVPSMGCCHAFIPCFHDQWSSRSWSSFYASIHASEVLQVFVQQTLTTKYHKTECACHDICAELCL-VGGYMRTDKDIEGMMQTLGDHDPDGLMKKFDKTRTMRHALVVRYVDCATNSVRQTVALAHPNSPANDLYQMARSIEEKITLRSADWFKNKTLPTPLPVNAFQKDGASIPLLKRRSYKVLLAVLLFIALLTLPFNATAGVFMIIAVLIAFGGSYVNLGKAVAKA---GGFGPTSSGISLPL-TQGFAGFVYLVSFF 1379
M E + + LAG+ +APGL++ V Q C + FT++ RL+FTQA HSAE+G+P M C + + CFHD+WS R W+S+YASI ASEVLQVFVQQTLTT Y + C D LC GG ++++KDI G+ QTLGDHDP M ++DKTR MRHALV+RY+DCA+NSV++T +A ++PA+ LY+MAR+I+ IT+++ +W +K+LP PL F+ L+K++ YK+L+ +LL ++L+ N TA VFM+IAV A G+Y V +A GFG SG + T F VYL+SFF
Sbjct: 1 MKGEHAVNVLDLAGMEDAPGLYDTVTQQCRVVFTNEKRLVFTQANHSAEVGLPKMNCLASLLTCFHDRWSRRKWTSYYASIKASEVLQVFVQQTLTTSYQTSTCTFTDFLDVLCCPTGGTLKSEKDINGVTQTLGDHDPGSCMTRWDKTRFMRHALVIRYLDCASNSVQETTLMALASTPASKLYEMARAIDTNITIKANNWLSHKSLPNPLAAQPFRNQTPPQALIKQKPYKILVFILLVVSLIFFAINPTAAVFMLIAVFAAVFGAYSGSKSPVMRARKSAGFGMFGSGSKTTVSTNAFGLAVYLLSFF 311
BLAST of mRNA_H-elongata_contig11904.1472.1 vs. uniprot
Match: A0A6H5KA59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA59_9PHAE) HSP 1 Score: 286 bits (731), Expect = 5.870e-88 Identity = 145/323 (44.89%), Postives = 205/323 (63.47%), Query Frame = 3
Query: 300 VPVMTPENYKQIQLSKGDPATSSLQKWDNLCVSKHIGAIASSMATQDEIDSFVLMIDEQPLQFMRLAGVAEAPGLHENVAQHCSMTFTSKNRLIFTQAKHSAELGVPSMGCCHAFIPCFHDQWSSRSWSSFYASIHASEVLQVFVQQTLTTKYHKTECACHDICAELCL-VGGYMRTDKDIEGMMQTLGDHDPDGLMKKFDKTRTMRHALVVRYVDCATNSVRQTVALAHPNSPANDLYQMARSIEEKITLRSADWFKNKTLPTPLPVNAFQKDGASIPLLKRRSYKVLLAVLLFIALLTLPFNATAGVFMIIAVLIAFGGSY 1265
+P + P + K +Q++ G + L++WD C +KH+ AI S+ T D++ F LM E+ + + LAG+ +APGL +++ Q C + FT+K RLIFTQA HSA +G+P M C + + C HD+WS R+W+++ A+I+ASEVLQVFV Q L+T Y + C +DI LC GG M ++KDI+G+ QTLGDHDP M ++DKTR MRHALV+RYVDCA++SV +T A+AHP+ PA+ LY+MARSIE IT+R DW K+K+LPT L + F + TA VFM+ AVL+A G+Y
Sbjct: 1 MPQIDPSSRKMLQMTSG--VAADLEEWDIECATKHLDAIKDSVTTHDDLHEFTLMKGEKVVNALDLAGLVDAPGLFDDLTQRCRVVFTNKKRLIFTQANHSAVVGLPKMRCLASLLTCCHDRWSRRTWTAYCATINASEVLQVFVHQELSTSYQTSTCTFNDILEFLCCPTGGSMYSEKDIDGVTQTLGDHDPGDCMSRWDKTRFMRHALVIRYVDCASHSVLETRAMAHPSVPASQLYEMARSIEANITVRMTDWTKSKSLPTALDASRFDNSSPXXXXXXXXXXXXXXXXXXXXXXXXXAVDTTAAVFMVFAVLVALYGAY 321
BLAST of mRNA_H-elongata_contig11904.1472.1 vs. uniprot
Match: D7FH32_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH32_ECTSI) HSP 1 Score: 278 bits (710), Expect = 1.190e-83 Identity = 180/460 (39.13%), Postives = 245/460 (53.26%), Query Frame = 3
Query: 48 RAPPRYD---NAPRAQTQASPSHIEAVPG-------AQPP--SVYQGLLNGAPVVVRPADDDPVFFHSEDYPFTIEQFDRKKEETLGVNVDQLPGNVPVMTPENYKQIQLSKGDPATSSLQKWDNLCVSKHIGAIASSMATQDEIDSFVLMIDEQPLQFMRLAGVAEAPGLHENVAQHCSMTFTSKNRLIFTQAKHSAELGVPSMGCCHAFIPCFHDQWSSRSWSSFYASIHASEVLQVFVQQTLTTKYHKTECACHDICAELCL-VGGYMRTDKDIEGMMQTLGDHDPDGLMKKFDKTRTMRHALVVRYVDCATNSVRQTVALAHPNSPANDLYQMARSIEEKITLRSADWFKNKTLPTPLPVNAFQKDGASIPLLKRRSYKVLLAVLLFIALLTLPFNATAGVFMIIAVLIAFGGSYVNLG---KAVAKAGGFGPTSSGISLPLTQGFAGFVYLVSFF 1379
R PP YD A TQ P++ PP + +G GAP A+ D +F ++ YPFT QFDR++E LG + P + + P + K +Q++ G + L+KWD C KH+ AI S+ T D++ F M E+ + + LAG+ EAPG+ + V Q C + FT+K RLIFTQ VLQVFVQQ LTT Y + C +DI LC GG M ++K+I G+ QTLGDHDP M ++DKTR MRHALV+RYVDCA+NSV++T A+AHP+ PA+ LY+MARSIE IT+R+ADW K K+LPT L +F S PL KR+SYK L+ +LL ++L+ N TA VFM ++VL A G+Y K V AG + ++ + G VY +SFF
Sbjct: 42 RTPPPYDADDGDSSAVTQGPPTYXXXXXXXXXXAYEVPPPRMTAARGTAIGAPA----AEVDEAYFFTDVYPFTAAQFDRERENLLGHHTGLDP-KMAQIDPSSRKMLQMTSG--VAADLEKWDIECARKHLDAIKDSVTTHDDLHQFTFMKGEKVVNALDLAGLEEAPGVFDEVTQRCRVVFTNKKRLIFTQ------------------------------------------VLQVFVQQKLTTSYQTSTCTFNDILDFLCCPTGGTMYSEKNIHGVTQTLGDHDPGDCMSRWDKTRHMRHALVIRYVDCASNSVKETTAMAHPSIPASQLYEMARSIEANITIRTADWMKCKSLPTALNAGSFNNSPPSPPLFKRKSYKGLMFLLLIVSLIFFAVNPTAAVFMFLSVLAALFGAYSGSKTQQKRVRNAGSWILNAASKRTLGSNGAGAGVYALSFF 452 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11904.1472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11904.1472.1 >prot_H-elongata_contig11904.1472.1 ID=prot_H-elongata_contig11904.1472.1|Name=mRNA_H-elongata_contig11904.1472.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=362bp MTPENYKQIQLSKGDPATSSLQKWDNLCVSKHIGAIASSMATQDEIDSFVback to top mRNA from alignment at H-elongata_contig11904:2220..7728- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig11904.1472.1 ID=mRNA_H-elongata_contig11904.1472.1|Name=mRNA_H-elongata_contig11904.1472.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5509bp|location=Sequence derived from alignment at H-elongata_contig11904:2220..7728- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig11904:2220..7728- >mRNA_H-elongata_contig11904.1472.1 ID=mRNA_H-elongata_contig11904.1472.1|Name=mRNA_H-elongata_contig11904.1472.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2172bp|location=Sequence derived from alignment at H-elongata_contig11904:2220..7728- (Himanthalia elongata Himel1 dioecious)back to top |