prot_H-elongata_contig11904.1472.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig11904.1472.1
Unique Nameprot_H-elongata_contig11904.1472.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length362
Homology
BLAST of mRNA_H-elongata_contig11904.1472.1 vs. uniprot
Match: D7FWP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWP8_ECTSI)

HSP 1 Score: 287 bits (735), Expect = 6.130e-92
Identity = 148/311 (47.59%), Postives = 206/311 (66.24%), Query Frame = 0
Query:   52 MIDEQPLQFMRLAGVAEAPGLHENVAQHCSMTFTSKNRLIFTQAKHSAELGVPSMGCCHAFIPCFHDQWSSRSWSSFYASIHASEVLQVFVQQTLTTKYHKTECACHDICAELCL-VGGYMRTDKDIEGMMQTLGDHDPDGLMKKFDKTRTMRHALVVRYVDCATNSVRQTVALAHPNSPANDLYQMARSIEEKITLRSADWFKNKTLPTPLPVNAFQKDGASIPLLKRRSYKVLLAVLLFIALLTLPFNATAGVFMIIAVLIAFGGSYVNLGKAVAKA---GGFGPTSSGISLPL-TQGFAGFVYLVSFF 357
            M  E  +  + LAG+ +APGL++ V Q C + FT++ RL+FTQA HSAE+G+P M C  + + CFHD+WS R W+S+YASI ASEVLQVFVQQTLTT Y  + C   D    LC   GG ++++KDI G+ QTLGDHDP   M ++DKTR MRHALV+RY+DCA+NSV++T  +A  ++PA+ LY+MAR+I+  IT+++ +W  +K+LP PL    F+       L+K++ YK+L+ +LL ++L+    N TA VFM+IAV  A  G+Y      V +A    GFG   SG    + T  F   VYL+SFF
Sbjct:    1 MKGEHAVNVLDLAGMEDAPGLYDTVTQQCRVVFTNEKRLVFTQANHSAEVGLPKMNCLASLLTCFHDRWSRRKWTSYYASIKASEVLQVFVQQTLTTSYQTSTCTFTDFLDVLCCPTGGTLKSEKDINGVTQTLGDHDPGSCMTRWDKTRFMRHALVIRYLDCASNSVQETTLMALASTPASKLYEMARAIDTNITIKANNWLSHKSLPNPLAAQPFRNQTPPQALIKQKPYKILVFILLVVSLIFFAINPTAAVFMLIAVFAAVFGAYSGSKSPVMRARKSAGFGMFGSGSKTTVSTNAFGLAVYLLSFF 311          
BLAST of mRNA_H-elongata_contig11904.1472.1 vs. uniprot
Match: A0A6H5KA59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA59_9PHAE)

HSP 1 Score: 284 bits (727), Expect = 4.050e-90
Identity = 145/318 (45.60%), Postives = 202/318 (63.52%), Query Frame = 0
Query:    3 PENYKQIQLSKGDPATSSLQKWDNLCVSKHIGAIASSMATQDEIDSFVLMIDEQPLQFMRLAGVAEAPGLHENVAQHCSMTFTSKNRLIFTQAKHSAELGVPSMGCCHAFIPCFHDQWSSRSWSSFYASIHASEVLQVFVQQTLTTKYHKTECACHDICAELCL-VGGYMRTDKDIEGMMQTLGDHDPDGLMKKFDKTRTMRHALVVRYVDCATNSVRQTVALAHPNSPANDLYQMARSIEEKITLRSADWFKNKTLPTPLPVNAFQKDGASIPLLKRRSYKVLLAVLLFIALLTLPFNATAGVFMIIAVLIAFGGSY 319
            P + K +Q++ G  A   L++WD  C +KH+ AI  S+ T D++  F LM  E+ +  + LAG+ +APGL +++ Q C + FT+K RLIFTQA HSA +G+P M C  + + C HD+WS R+W+++ A+I+ASEVLQVFV Q L+T Y  + C  +DI   LC   GG M ++KDI+G+ QTLGDHDP   M ++DKTR MRHALV+RYVDCA++SV +T A+AHP+ PA+ LY+MARSIE  IT+R  DW K+K+LPT L  + F                                + TA VFM+ AVL+A  G+Y
Sbjct:    6 PSSRKMLQMTSGVAA--DLEEWDIECATKHLDAIKDSVTTHDDLHEFTLMKGEKVVNALDLAGLVDAPGLFDDLTQRCRVVFTNKKRLIFTQANHSAVVGLPKMRCLASLLTCCHDRWSRRTWTAYCATINASEVLQVFVHQELSTSYQTSTCTFNDILEFLCCPTGGSMYSEKDIDGVTQTLGDHDPGDCMSRWDKTRFMRHALVIRYVDCASHSVLETRAMAHPSVPASQLYEMARSIEANITVRMTDWTKSKSLPTALDASRFDNSSPXXXXXXXXXXXXXXXXXXXXXXXXXAVDTTAAVFMVFAVLVALYGAY 321          
BLAST of mRNA_H-elongata_contig11904.1472.1 vs. uniprot
Match: D7FH32_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH32_ECTSI)

HSP 1 Score: 252 bits (644), Expect = 1.630e-76
Identity = 151/359 (42.06%), Postives = 202/359 (56.27%), Query Frame = 0
Query:    3 PENYKQIQLSKGDPATSSLQKWDNLCVSKHIGAIASSMATQDEIDSFVLMIDEQPLQFMRLAGVAEAPGLHENVAQHCSMTFTSKNRLIFTQAKHSAELGVPSMGCCHAFIPCFHDQWSSRSWSSFYASIHASEVLQVFVQQTLTTKYHKTECACHDICAELCL-VGGYMRTDKDIEGMMQTLGDHDPDGLMKKFDKTRTMRHALVVRYVDCATNSVRQTVALAHPNSPANDLYQMARSIEEKITLRSADWFKNKTLPTPLPVNAFQKDGASIPLLKRRSYKVLLAVLLFIALLTLPFNATAGVFMIIAVLIAFGGSYVNLG---KAVAKAGGFGPTSSGISLPLTQGFAGFVYLVSFF 357
            P + K +Q++ G  A   L+KWD  C  KH+ AI  S+ T D++  F  M  E+ +  + LAG+ EAPG+ + V Q C + FT+K RLIFTQ                                          VLQVFVQQ LTT Y  + C  +DI   LC   GG M ++K+I G+ QTLGDHDP   M ++DKTR MRHALV+RYVDCA+NSV++T A+AHP+ PA+ LY+MARSIE  IT+R+ADW K K+LPT L   +F     S PL KR+SYK L+ +LL ++L+    N TA VFM ++VL A  G+Y       K V  AG +   ++      + G    VY +SFF
Sbjct:  138 PSSRKMLQMTSGVAA--DLEKWDIECARKHLDAIKDSVTTHDDLHQFTFMKGEKVVNALDLAGLEEAPGVFDEVTQRCRVVFTNKKRLIFTQ------------------------------------------VLQVFVQQKLTTSYQTSTCTFNDILDFLCCPTGGTMYSEKNIHGVTQTLGDHDPGDCMSRWDKTRHMRHALVIRYVDCASNSVKETTAMAHPSIPASQLYEMARSIEANITIRTADWMKCKSLPTALNAGSFNNSPPSPPLFKRKSYKGLMFLLLIVSLIFFAVNPTAAVFMFLSVLAALFGAYSGSKTQQKRVRNAGSWILNAASKRTLGSNGAGAGVYALSFF 452          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11904.1472.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FWP8_ECTSI6.130e-9247.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KA59_9PHAE4.050e-9045.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH32_ECTSI1.630e-7642.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..283
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 284..317
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 337..358
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 359..361
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 318..336
NoneNo IPR availableTMHMMTMhelixcoord: 284..315
NoneNo IPR availableTMHMMTMhelixcoord: 335..357

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11904contigH-elongata_contig11904:2537..6779 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11904.1472.1mRNA_H-elongata_contig11904.1472.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig11904 2220..7728 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig11904.1472.1 ID=prot_H-elongata_contig11904.1472.1|Name=mRNA_H-elongata_contig11904.1472.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=362bp
MTPENYKQIQLSKGDPATSSLQKWDNLCVSKHIGAIASSMATQDEIDSFV
LMIDEQPLQFMRLAGVAEAPGLHENVAQHCSMTFTSKNRLIFTQAKHSAE
LGVPSMGCCHAFIPCFHDQWSSRSWSSFYASIHASEVLQVFVQQTLTTKY
HKTECACHDICAELCLVGGYMRTDKDIEGMMQTLGDHDPDGLMKKFDKTR
TMRHALVVRYVDCATNSVRQTVALAHPNSPANDLYQMARSIEEKITLRSA
DWFKNKTLPTPLPVNAFQKDGASIPLLKRRSYKVLLAVLLFIALLTLPFN
ATAGVFMIIAVLIAFGGSYVNLGKAVAKAGGFGPTSSGISLPLTQGFAGF
VYLVSFFGSTF*
back to top