mRNA_H-elongata_contig118929.1467.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig118929.1467.1
Unique NamemRNA_H-elongata_contig118929.1467.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig118929.1467.1 vs. uniprot
Match: A0A6H5JX67_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX67_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 3.160e-11
Identity = 42/108 (38.89%), Postives = 59/108 (54.63%), Query Frame = 1 
Query:    7 SYLEVLLRTDCE-SIEVSVMKRILHYAGRVTRMHDDRLPNIVMRSEMVGGKRKRGQPAKRLEHRVTEYCNAFGI-DPK---CWMRAAQDAPEWHRKVETGAEVFISAW 315
            S+ + L++  CE +IE +V KR L +AG VTRM D+RLP  ++   M GG   RG   +    R+ E   AF + D K    W  +A+D   W+ KVE GA  F+  W
Sbjct:   39 SHAQALIQAGCEETIEATVRKRRLCFAGFVTRMEDNRLPKRMLLGAMAGGVGYRGGQERDWVSRLGEGLVAFNMGDDKEGGKWKESAKDPEVWYNKVEDGAAWFMRKW 146
[Close]
BLAST of mRNA_H-elongata_contig118929.1467.1 vs. uniprot
Match: A0A6H5KSH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSH7_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 3.770e-11
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 1 
Query:    7 SYLEVLLRTDCE-SIEVSVMKRILHYAGRVTRMHDDRLPNIVMRSEMVGGKRKRGQPAKRLEHRVTEYCNAFGIDPKC----WMRAAQDAPEWHRKVETGAEVFISAW 315
            SY + L++  CE +IE +V KR L +AG V RM D+RLP  ++   M GG   RG       +R+ E   AFG+  +     W  +A+D   W+ K+E GA  F+  W
Sbjct:  151 SYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKW 258
[Close]
BLAST of mRNA_H-elongata_contig118929.1467.1 vs. uniprot
Match: A0A6H5KB07_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB07_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 4.250e-11
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 1 
Query:    7 SYLEVLLRTDCE-SIEVSVMKRILHYAGRVTRMHDDRLPNIVMRSEMVGGKRKRGQPAKRLEHRVTEYCNAFGIDPKC----WMRAAQDAPEWHRKVETGAEVFISAW 315
            SY + L++  CE +IE +V KR L +AG V RM D+RLP  ++   M GG   RG       +R+ E   AFG+  +     W  +A+D   W+ K+E GA  F+  W
Sbjct:  181 SYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKW 288
[Close]
BLAST of mRNA_H-elongata_contig118929.1467.1 vs. uniprot
Match: A0A6H5L5T8_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5T8_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 5.150e-11
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 1 
Query:    7 SYLEVLLRTDCE-SIEVSVMKRILHYAGRVTRMHDDRLPNIVMRSEMVGGKRKRGQPAKRLEHRVTEYCNAFGIDPKC----WMRAAQDAPEWHRKVETGAEVFISAW 315
            SY + L++  CE +IE +V KR L +AG V RM D+RLP  ++   M GG   RG       +R+ E   AFG+  +     W  +A+D   W+ K+E GA  F+  W
Sbjct:  271 SYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKW 378
[Close]
BLAST of mRNA_H-elongata_contig118929.1467.1 vs. uniprot
Match: A0A6H5LD24_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD24_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 5.350e-11
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 1 
Query:    7 SYLEVLLRTDCE-SIEVSVMKRILHYAGRVTRMHDDRLPNIVMRSEMVGGKRKRGQPAKRLEHRVTEYCNAFGIDPKC----WMRAAQDAPEWHRKVETGAEVFISAW 315
            SY + L++  CE +IE +V KR L +AG V RM D+RLP  ++   M GG   RG       +R+ E   AFG+  +     W  +A+D   W+ K+E GA  F+  W
Sbjct:  360 SYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKW 467
[Close]
BLAST of mRNA_H-elongata_contig118929.1467.1 vs. uniprot
Match: A0A6H5JHY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY4_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 5.490e-11
Identity = 44/134 (32.84%), Postives = 66/134 (49.25%), Query Frame = 1 
Query:    7 SYLEVLLRTDCE-SIEVSVMKRILHYAGRVTRMHDDRLPNIVMRSEMVGGKRKRGQPAKRLEHRVTEYCNAFGIDPKC----WMRAAQDAPEWHRKVETGAEVFISAWSTNRVNEINARHAKEPFASLPFELLL 393
            SY + L++  CE +IE +V KR L +AG V RM D+RLP  ++   M GG   RG        R+ E   AF +  +     W  +A+D   W+ KVE GA  F+  W    V    +    + F +L  E+++
Sbjct:  322 SYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDGAAWFMRKWHRQEVGVTLSNTVGQVFCTLLNEIIV 455
[Close]
BLAST of mRNA_H-elongata_contig118929.1467.1 vs. uniprot
Match: A0A6H5JF72_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF72_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 5.520e-11
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 1 
Query:    7 SYLEVLLRTDCE-SIEVSVMKRILHYAGRVTRMHDDRLPNIVMRSEMVGGKRKRGQPAKRLEHRVTEYCNAFGIDPKC----WMRAAQDAPEWHRKVETGAEVFISAW 315
            SY + L++  CE +IE +V KR L +AG V RM D+RLP  ++   M GG   RG       +R+ E   AFG+  +     W  +A+D   W+ K+E GA  F+  W
Sbjct:  450 SYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKW 557
[Close]
BLAST of mRNA_H-elongata_contig118929.1467.1 vs. uniprot
Match: A0A6H5KKB2_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB2_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 5.590e-11
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 1 
Query:    7 SYLEVLLRTDCE-SIEVSVMKRILHYAGRVTRMHDDRLPNIVMRSEMVGGKRKRGQPAKRLEHRVTEYCNAFGIDPKC----WMRAAQDAPEWHRKVETGAEVFISAW 315
            SY + L++  CE +IE +V KR L +AG V RM D+RLP  ++   M GG   RG       +R+ E   AFG+  +     W  +A+D   W+ K+E GA  F+  W
Sbjct:  515 SYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKW 622
[Close]
BLAST of mRNA_H-elongata_contig118929.1467.1 vs. uniprot
Match: A0A6H5LM52_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LM52_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 5.780e-11
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 1 
Query:    7 SYLEVLLRTDCE-SIEVSVMKRILHYAGRVTRMHDDRLPNIVMRSEMVGGKRKRGQPAKRLEHRVTEYCNAFGIDPKC----WMRAAQDAPEWHRKVETGAEVFISAW 315
            SY + L++  CE +IE +V KR L +AG V RM D+RLP  ++   M GG   RG       +R+ E   AFG+  +     W  +A+D   W+ K+E GA  F+  W
Sbjct:  780 SYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKW 887
[Close]
BLAST of mRNA_H-elongata_contig118929.1467.1 vs. uniprot
Match: A0A6H5K8Z5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z5_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 5.780e-11
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 1 
Query:    7 SYLEVLLRTDCE-SIEVSVMKRILHYAGRVTRMHDDRLPNIVMRSEMVGGKRKRGQPAKRLEHRVTEYCNAFGIDPKC----WMRAAQDAPEWHRKVETGAEVFISAW 315
            SY + L++  CE +IE +V KR L +AG V RM D+RLP  ++   M GG   RG       +R+ E   AFG+  +     W  +A+D   W+ K+E GA  F+  W
Sbjct:  793 SYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKW 900
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118929.1467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JX67_9PHAE3.160e-1138.89Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KSH7_9PHAE3.770e-1137.04Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB07_9PHAE4.250e-1137.04Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L5T8_9PHAE5.150e-1137.04Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LD24_9PHAE5.350e-1137.04Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JHY4_9PHAE5.490e-1132.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF72_9PHAE5.520e-1137.04Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KKB2_9PHAE5.590e-1137.04Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LM52_9PHAE5.780e-1137.04Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K8Z5_9PHAE5.780e-1137.04Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118929contigH-elongata_contig118929:193..594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score62.8
Seed ortholog evalue1.4e-07
Seed eggNOG ortholog7739.XP_002599408.1
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs3A35Z@33154,3BQYF@33208,3D7GC@33213,48EZY@7711,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelChordata
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size402
Cds size402
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929696.157317-CDS-H-elongata_contig118929:192..5941622929696.157317-CDS-H-elongata_contig118929:192..594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118929 193..594 -
1691679122.4380953-CDS-H-elongata_contig118929:192..5941691679122.4380953-CDS-H-elongata_contig118929:192..594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118929 193..594 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118929.1467.1prot_H-elongata_contig118929.1467.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig118929 193..594 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig118929.1467.1

>prot_H-elongata_contig118929.1467.1 ID=prot_H-elongata_contig118929.1467.1|Name=mRNA_H-elongata_contig118929.1467.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
MFSYLEVLLRTDCESIEVSVMKRILHYAGRVTRMHDDRLPNIVMRSEMVG
GKRKRGQPAKRLEHRVTEYCNAFGIDPKCWMRAAQDAPEWHRKVETGAEV
FISAWSTNRVNEINARHAKEPFASLPFELLLCRF
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mRNA from alignment at H-elongata_contig118929:193..594-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig118929.1467.1 ID=mRNA_H-elongata_contig118929.1467.1|Name=mRNA_H-elongata_contig118929.1467.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=402bp|location=Sequence derived from alignment at H-elongata_contig118929:193..594- (Himanthalia elongata Himel1 dioecious)
ATGTTCTCATACCTTGAGGTCCTCCTTAGGACTGACTGTGAGAGCATTGA
GGTTTCTGTGATGAAGCGCATCCTCCACTACGCCGGCCGCGTCACGCGCA
TGCACGACGATCGTCTCCCCAACATCGTCATGCGTAGTGAAATGGTCGGA
GGGAAGAGAAAACGGGGCCAGCCTGCGAAACGCCTCGAACATCGTGTCAC
GGAATACTGCAATGCCTTTGGAATTGACCCCAAGTGTTGGATGCGGGCCG
CCCAAGATGCACCTGAGTGGCACCGTAAAGTAGAGACCGGAGCTGAAGTC
TTCATATCGGCCTGGTCCACCAACCGTGTGAACGAGATCAACGCCCGCCA
CGCAAAGGAACCTTTCGCTTCTTTGCCGTTTGAGCTCCTATTATGTCGAT
TT
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Coding sequence (CDS) from alignment at H-elongata_contig118929:193..594-

>mRNA_H-elongata_contig118929.1467.1 ID=mRNA_H-elongata_contig118929.1467.1|Name=mRNA_H-elongata_contig118929.1467.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig118929:193..594- (Himanthalia elongata Himel1 dioecious)
ATGTTCTCATACCTTGAGGTCCTCCTTAGGACTGACTGTGAGAGCATTGA
GGTTTCTGTGATGAAGCGCATCCTCCACTACGCCGGCCGCGTCACGCGCA
TGCACGACGATCGTCTCCCCAACATCGTCATGCGTAGTGAAATGGTCGGA
GGGAAGAGAAAACGGGGCCAGCCTGCGAAACGCCTCGAACATCGTGTCAC
GGAATACTGCAATGCCTTTGGAATTGACCCCAAGTGTTGGATGCGGGCCG
CCCAAGATGCACCTGAGTGGCACCGTAAAGTAGAGACCGGAGCTGAAGTC
TTCATATCGGCCTGGTCCACCAACCGTGTGAACGAGATCAACGCCCGCCA
CGCAAAGGAACCTTTCGCTTCTTTGCCGTTTGAGCTCCTATTATGTCGAT
TTATGTTCTCATACCTTGAGGTCCTCCTTAGGACTGACTGTGAGAGCATT
GAGGTTTCTGTGATGAAGCGCATCCTCCACTACGCCGGCCGCGTCACGCG
CATGCACGACGATCGTCTCCCCAACATCGTCATGCGTAGTGAAATGGTCG
GAGGGAAGAGAAAACGGGGCCAGCCTGCGAAACGCCTCGAACATCGTGTC
ACGGAATACTGCAATGCCTTTGGAATTGACCCCAAGTGTTGGATGCGGGC
CGCCCAAGATGCACCTGAGTGGCACCGTAAAGTAGAGACCGGAGCTGAAG
TCTTCATATCGGCCTGGTCCACCAACCGTGTGAACGAGATCAACGCCCGC
CACGCAAAGGAACCTTTCGCTTCTTTGCCGTTTGAGCTCCTATTATGTCG
ATTT
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