mRNA_H-elongata_contig118830.1456.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig118830.1456.1
Unique NamemRNA_H-elongata_contig118830.1456.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig118830.1456.1 vs. uniprot
Match: D8LK66_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK66_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 2.940e-24
Identity = 54/97 (55.67%), Postives = 64/97 (65.98%), Query Frame = 1 
Query:   31 PHVGHYRK-----PRGRGEDPSPRLGVSTPATIALRSLLKGGEVPPVGFAAASMIFTFVALLSWPGLYTTVNPTPEGDKDANIIDVFRMITTLVQRW 306
            P +G Y +     P G  +   P  G+S P  I LR+L KGGEVPPV FA  SMIFT  AL++W  LYT VNPT EGDK A ++D FRMITTL+QRW
Sbjct:  266 PLLGAYTRSATETPGGAAKALLPAWGISIPVGIFLRALSKGGEVPPVPFAVTSMIFTLAALMAWRQLYTAVNPTGEGDKQAGLLDGFRMITTLLQRW 362
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118830.1456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LK66_ECTSI2.940e-2455.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118830contigH-elongata_contig118830:1534..1842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.3
Seed ortholog evalue8.7e-21
Seed eggNOG ortholog2880.D8LK66
EggNOG free text desc.Protein of unknown function (DUF3054)
EggNOG OGs2CM8N@1,2QPMJ@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons1
Model size311
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929695.204638-CDS-H-elongata_contig118830:1533..18421622929695.204638-CDS-H-elongata_contig118830:1533..1842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118830 1534..1842 -
1691679122.0167956-CDS-H-elongata_contig118830:1533..18421691679122.0167956-CDS-H-elongata_contig118830:1533..1842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118830 1534..1842 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118830.1456.1prot_H-elongata_contig118830.1456.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig118830 1534..1842 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig118830.1456.1

>prot_H-elongata_contig118830.1456.1 ID=prot_H-elongata_contig118830.1456.1|Name=mRNA_H-elongata_contig118830.1456.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
LAGCIPSTRGPHVGHYRKPRGRGEDPSPRLGVSTPATIALRSLLKGGEVP
PVGFAAASMIFTFVALLSWPGLYTTVNPTPEGDKDANIIDVFRMITTLVQ
RW*
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mRNA from alignment at H-elongata_contig118830:1534..1842-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig118830.1456.1 ID=mRNA_H-elongata_contig118830.1456.1|Name=mRNA_H-elongata_contig118830.1456.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=309bp|location=Sequence derived from alignment at H-elongata_contig118830:1534..1842- (Himanthalia elongata Himel1 dioecious)
TTGGCTGGCTGTATCCCCTCTACTCGGGGCCCACACGTCGGCCACTACCG
CAAGCCTCGGGGACGCGGCGAAGATCCTAGTCCCCGCCTGGGAGTCTCGA
CACCCGCGACCATCGCCCTGCGAAGTCTGCTGAAGGGGGGCGAGGTTCCT
CCCGTGGGTTTCGCGGCGGCCTCGATGATCTTCACGTTTGTTGCCCTCCT
ATCGTGGCCAGGGCTGTACACCACGGTCAACCCCACGCCGGAGGGGGACA
AGGATGCGAACATTATCGACGTTTTCCGCATGATCACCACGCTGGTCCAG
CGTTGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig118830:1534..1842-

>mRNA_H-elongata_contig118830.1456.1 ID=mRNA_H-elongata_contig118830.1456.1|Name=mRNA_H-elongata_contig118830.1456.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig118830:1534..1842- (Himanthalia elongata Himel1 dioecious)
TTGGCTGGCTGTATCCCCTCTACTCGGGGCCCACACGTCGGCCACTACCG
CAAGCCTCGGGGACGCGGCGAAGATCCTAGTCCCCGCCTGGGAGTCTCGA
CACCCGCGACCATCGCCCTGCGAAGTCTGCTGAAGGGGGGCGAGGTTCCT
CCCGTGGGTTTCGCGGCGGCCTCGATGATCTTCACGTTTGTTGCCCTCCT
ATCGTGGCCAGGGCTGTACACCACGGTCAACCCCACGCCGGAGGGGGACA
AGGATGCGAACATTATCGACGTTTTCCGCATGATCACCACGCTGGTCCAG
CGTTGGTAGTTGGCTGGCTGTATCCCCTCTACTCGGGGCCCACACGTCGG
CCACTACCGCAAGCCTCGGGGACGCGGCGAAGATCCTAGTCCCCGCCTGG
GAGTCTCGACACCCGCGACCATCGCCCTGCGAAGTCTGCTGAAGGGGGGC
GAGGTTCCTCCCGTGGGTTTCGCGGCGGCCTCGATGATCTTCACGTTTGT
TGCCCTCCTATCGTGGCCAGGGCTGTACACCACGGTCAACCCCACGCCGG
AGGGGGACAAGGATGCGAACATTATCGACGTTTTCCGCATGATCACCACG
CTGGTCCAGCGTTGGTAG
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