prot_H-elongata_contig118830.1456.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig118830.1456.1
Unique Nameprot_H-elongata_contig118830.1456.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length103
Homology
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BLAST of mRNA_H-elongata_contig118830.1456.1 vs. uniprot
Match: D8LK66_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK66_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 2.940e-24
Identity = 54/97 (55.67%), Postives = 64/97 (65.98%), Query Frame = 0 
Query:   11 PHVGHYRK-----PRGRGEDPSPRLGVSTPATIALRSLLKGGEVPPVGFAAASMIFTFVALLSWPGLYTTVNPTPEGDKDANIIDVFRMITTLVQRW 102
            P +G Y +     P G  +   P  G+S P  I LR+L KGGEVPPV FA  SMIFT  AL++W  LYT VNPT EGDK A ++D FRMITTL+QRW
Sbjct:  266 PLLGAYTRSATETPGGAAKALLPAWGISIPVGIFLRALSKGGEVPPVPFAVTSMIFTLAALMAWRQLYTAVNPTGEGDKQAGLLDGFRMITTLLQRW 362
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118830.1456.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LK66_ECTSI2.940e-2455.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 70..102
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 49..69
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118830contigH-elongata_contig118830:1534..1842 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118830.1456.1mRNA_H-elongata_contig118830.1456.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig118830 1534..1842 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig118830.1456.1 ID=prot_H-elongata_contig118830.1456.1|Name=mRNA_H-elongata_contig118830.1456.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
LAGCIPSTRGPHVGHYRKPRGRGEDPSPRLGVSTPATIALRSLLKGGEVP
PVGFAAASMIFTFVALLSWPGLYTTVNPTPEGDKDANIIDVFRMITTLVQ
RW*
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