mRNA_H-elongata_contig1188.1455.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1188.1455.1
Unique NamemRNA_H-elongata_contig1188.1455.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1188.1455.1 vs. uniprot
Match: UPI001C988E4D (hypothetical protein n=3 Tax=Bacteria TaxID=2 RepID=UPI001C988E4D)

HSP 1 Score: 100 bits (249), Expect = 9.810e-23
Identity = 55/129 (42.64%), Postives = 78/129 (60.47%), Query Frame = 1
Query:   13 EPRNRRQAMESLEWDDWWKAEETEMRGMVENCVYKQVARPKDKLVVGTKMLYKREVGQDDKVEKYKCRLVAQGFWQVEGVH*TEKYSPTPSTASIRMLLAIAAAKDDELCHFDAEQVFLKANIDEELYI 399
            +P     AM  ++   W +A ++EM  M  N V+  V  P+  + +G K +YKR++G D KVE YK RLVA+G+ Q +GV   E +SP     SIR+LLAIAA  D E+C  D +  FL  NI+E+LY+
Sbjct:   88 DPTTYEGAMLDIDSSRWQEAMKSEMDSMYSNGVWTLVDPPEGIVPIGCKWIYKRKIGSDGKVETYKARLVAKGYNQKQGVDYEETFSPVAMLKSIRILLAIAAYYDYEICQMDVKTAFLNGNIEEDLYM 216          
BLAST of mRNA_H-elongata_contig1188.1455.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 102 bits (253), Expect = 1.510e-22
Identity = 52/131 (39.69%), Postives = 83/131 (63.36%), Query Frame = 1
Query:    7 IPEPRNRRQAMESLEWDDWWKAEETEMRGMVENCVYKQVARPKDKLVVGTKMLYKREVGQDDKVEKYKCRLVAQGFWQVEGVH*TEKYSPTPSTASIRMLLAIAAAKDDELCHFDAEQVFLKANIDEELYI 399
            + +P +   AM   +  +W KA E E+    +  V+++V RP+D+ ++G+K ++K + G D +VEKYK RLVAQGF QVEG+   E ++P   + SIR+LLA+AA  D E+   D +  FL   ++EE+Y+
Sbjct:  992 LGDPLSYVDAMSQEDAAEWRKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYM 1122          
BLAST of mRNA_H-elongata_contig1188.1455.1 vs. uniprot
Match: UPI001C97B5BC (DDE-type integrase/transposase/recombinase n=2 Tax=Actinobacteria TaxID=201174 RepID=UPI001C97B5BC)

HSP 1 Score: 100 bits (249), Expect = 5.030e-22
Identity = 55/129 (42.64%), Postives = 78/129 (60.47%), Query Frame = 1
Query:   13 EPRNRRQAMESLEWDDWWKAEETEMRGMVENCVYKQVARPKDKLVVGTKMLYKREVGQDDKVEKYKCRLVAQGFWQVEGVH*TEKYSPTPSTASIRMLLAIAAAKDDELCHFDAEQVFLKANIDEELYI 399
            +P     AM  ++   W +A E+EM  M  N V+  V  P+  + +G K +YKR++G D KVE YK RLVA+G+ Q +GV   + +SP     SIR+LLAIAA  D E+C  D +  FL  NI+E+LY+
Sbjct:  480 DPTTYEGAMLDIDSTRWQQAMESEMDSMYSNQVWTLVNPPEGIVPIGCKWIYKRKIGSDGKVETYKARLVAKGYNQKQGVDYEDTFSPVAMLKSIRILLAIAAHYDYEICQMDVKTAFLNGNIEEDLYM 608          
BLAST of mRNA_H-elongata_contig1188.1455.1 vs. uniprot
Match: A0A1C7MSU6_GRIFR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MSU6_GRIFR)

HSP 1 Score: 98.6 bits (244), Expect = 2.350e-21
Identity = 52/131 (39.69%), Postives = 83/131 (63.36%), Query Frame = 1
Query:    7 IPEPRNRRQAMESLEWDDWWKAEETEMRGMVENCVYKQVARPKDKLVVGTKMLYKREVGQDDKVEKYKCRLVAQGFWQVEGVH*TEKYSPTPSTASIRMLLAIAAAKDDELCHFDAEQVFLKANIDEELYI 399
            + +P++  +AM   + + W  A   E+   V+  +Y +V RP+D+ VVG K +++ + G D ++EKYK R+VA+GF QVEGV  T+ ++P    ASIR LLA+AA  D E+   D +  FL  N+DEE+++
Sbjct:  279 LDDPQSYEEAMSRPDAERWKAACAEELLTFVKAELYDEVERPRDRKVVGCKWVFRIKRGPDGEIEKYKARVVAKGFTQVEGVDYTDTFAPVTKFASIRALLALAAKLDLEIHQMDVKSAFLNGNLDEEIFM 409          
BLAST of mRNA_H-elongata_contig1188.1455.1 vs. uniprot
Match: A0A7D9D6Q5_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D6Q5_PARCT)

HSP 1 Score: 95.9 bits (237), Expect = 2.110e-20
Identity = 51/132 (38.64%), Postives = 83/132 (62.88%), Query Frame = 1
Query:    4 DIPEPRNRRQAMESLEWDDWWKAEETEMRGMVENCVYKQVARPKDKLVVGTKMLYKREVGQDDKVEKYKCRLVAQGFWQVEGVH*TEKYSPTPSTASIRMLLAIAAAKDDELCHFDAEQVFLKANIDEELYI 399
            DI EP N  +A       +W +A ++E   ++EN  ++ V+ PK K VVG+K ++K +  ++  V++YK RLVAQG+ Q EGV  +E +SP     +IR LLA++ AK+ E+   D +  FL+ N++EE+Y+
Sbjct:  806 DINEPINMDEAFSGEHSAEWKQATDSENNSLIENETWELVSLPKGKNVVGSKWVFKVKTDENGCVQRYKARLVAQGYTQAEGVDYSEVFSPVVRNTTIRSLLALSNAKNWEVHQMDVKTAFLQGNLEEEIYM 937          
BLAST of mRNA_H-elongata_contig1188.1455.1 vs. uniprot
Match: A0A1V9YIL7_9STRA (RNA-dependent DNA polymerase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YIL7_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.030e-19
Identity = 49/131 (37.40%), Postives = 80/131 (61.07%), Query Frame = 1
Query:    7 IPEPRNRRQAMESLEWDDWWKAEETEMRGMVENCVYKQVARPKDKLVVGTKMLYKREVGQDDKVEKYKCRLVAQGFWQVEGVH*TEKYSPTPSTASIRMLLAIAAAKDDELCHFDAEQVFLKANIDEELYI 399
            + EPRN  +A+   +  +W  A ++E+  +++N  ++ VA+P D  +VG K +YK +   + +VE++K RLVAQGF Q  GV  TE +SP     S+R+LL IA   D  + H D  Q ++KA++D  +Y+
Sbjct: 1239 VNEPRNPSEALNGPQAKEWQTAMQSEIDNLIQNGTWELVAKPTDTNIVGHKWVYKVKFDSNGEVERFKARLVAQGFSQRYGVDFTETFSPVIRQPSVRILLVIATHLDVPVLHLDVPQAYVKADLDTTVYM 1369          
BLAST of mRNA_H-elongata_contig1188.1455.1 vs. uniprot
Match: A0A5N6LDI3_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LDI3_9ASTR)

HSP 1 Score: 93.2 bits (230), Expect = 1.560e-19
Identity = 49/133 (36.84%), Postives = 77/133 (57.89%), Query Frame = 1
Query:    1 LDIPEPRNRRQAMESLEWDDWWKAEETEMRGMVENCVYKQVARPKDKLVVGTKMLYKREVGQDDKVEKYKCRLVAQGFWQVEGVH*TEKYSPTPSTASIRMLLAIAAAKDDELCHFDAEQVFLKANIDEELYI 399
            +D  EP   R AM   ++D W +A   EM+ M +N V++ V  P    VVG+K ++K++      ++ YK RLVA+G+ Q +GV   E +SP     SIR+L AIAA  D E+C  D +  FL   ++E++++
Sbjct:   40 VDSDEPTTYRDAMSKPDFDKWKEAMNIEMQSMYDNQVWELVTPPIKSKVVGSKWVFKKKTDMHGNLDTYKARLVAKGYTQTQGVDYDETFSPVAMLKSIRILFAIAAYYDYEICQMDVKTAFLNGYLEEDVHM 172          
BLAST of mRNA_H-elongata_contig1188.1455.1 vs. uniprot
Match: A0A6S7GWB8_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GWB8_PARCT)

HSP 1 Score: 92.8 bits (229), Expect = 2.430e-19
Identity = 51/132 (38.64%), Postives = 78/132 (59.09%), Query Frame = 1
Query:    4 DIPEPRNRRQAMESLEWDDWWKAEETEMRGMVENCVYKQVARPKDKLVVGTKMLYKREVGQDDKVEKYKCRLVAQGFWQVEGVH*TEKYSPTPSTASIRMLLAIAAAKDDELCHFDAEQVFLKANIDEELYI 399
            DI EPRN  +A  +     W KA ++E   ++EN  ++ V  P DK +VG++ ++K +   D  VEK+K RLVAQG+ Q EG+   E +SP     SIR LLA+A   D E+   D +  FL+ ++ +E+Y+
Sbjct:  549 DINEPRNISEAWSNEYNTQWKKATDSEFNALMENGTWELVPPPDDKNIVGSRWVFKVKRKADGSVEKFKARLVAQGYSQTEGIDYNEVFSPVVRNTSIRSLLALANILDWEIHQMDVKTAFLQGDLTDEIYM 680          
BLAST of mRNA_H-elongata_contig1188.1455.1 vs. uniprot
Match: M4CW55_BRARP (Integrase catalytic domain-containing protein n=1 Tax=Brassica rapa subsp. pekinensis TaxID=51351 RepID=M4CW55_BRARP)

HSP 1 Score: 92.8 bits (229), Expect = 2.550e-19
Identity = 51/131 (38.93%), Postives = 78/131 (59.54%), Query Frame = 1
Query:    7 IPEPRNRRQAMESLEWDDWWKAEETEMRGMVENCVYKQVARPKDKLVVGTKMLYKREVGQDDKVEKYKCRLVAQGFWQVEGVH*TEKYSPTPSTASIRMLLAIAAAKDDELCHFDAEQVFLKANIDEELYI 399
            IPEPRN  QA +  EW D   A   E+  + EN  +   + P+ K  VG K ++K ++  D  +E+YK RLVA+G+ Q EG+   E +SP    +++++LLA+AAAK+  L   D    FL  ++DEE+Y+
Sbjct:  713 IPEPRNFDQACKLKEWCD---AMGIEITALEENNTWLVCSLPEGKRAVGCKWVFKVKLNADGTLERYKARLVAKGYTQQEGIDYVETFSPVAKLSTVKLLLAVAAAKNWSLSQLDVSNAFLNGDLDEEIYM 840          
BLAST of mRNA_H-elongata_contig1188.1455.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT)

HSP 1 Score: 92.4 bits (228), Expect = 3.500e-19
Identity = 51/132 (38.64%), Postives = 77/132 (58.33%), Query Frame = 1
Query:    4 DIPEPRNRRQAMESLEWDDWWKAEETEMRGMVENCVYKQVARPKDKLVVGTKMLYKREVGQDDKVEKYKCRLVAQGFWQVEGVH*TEKYSPTPSTASIRMLLAIAAAKDDELCHFDAEQVFLKANIDEELYI 399
            DI EPRN  +A  +     W KA ++E   ++EN  ++ V  P DK +VG++ ++K +   D  VEK+K RLVAQG+ Q EG+   E +SP     SIR LLA+A   D E+   D    FL+ ++ +E+Y+
Sbjct:  829 DINEPRNISEAWSNEYNTQWKKATDSEFNALMENGTWELVPPPDDKNIVGSRWVFKVKRKADGSVEKFKARLVAQGYSQTEGIDYNEVFSPVVRNTSIRSLLALANILDWEIHQMDVRTAFLQGDLTDEIYM 960          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1188.1455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C988E4D9.810e-2342.64hypothetical protein n=3 Tax=Bacteria TaxID=2 RepI... [more]
A0A0C2WN23_AMAMK1.510e-2239.69Integrase catalytic domain-containing protein (Fra... [more]
UPI001C97B5BC5.030e-2242.64DDE-type integrase/transposase/recombinase n=2 Tax... [more]
A0A1C7MSU6_GRIFR2.350e-2139.69Retrovirus-related Pol polyprotein from transposon... [more]
A0A7D9D6Q5_PARCT2.110e-2038.64Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A1V9YIL7_9STRA1.030e-1937.40RNA-dependent DNA polymerase n=1 Tax=Achlya hypogy... [more]
A0A5N6LDI3_9ASTR1.560e-1936.84Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A6S7GWB8_PARCT2.430e-1938.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
M4CW55_BRARP2.550e-1938.93Integrase catalytic domain-containing protein n=1 ... [more]
A0A7D9IUY0_PARCT3.500e-1938.64Retrovirus-related Pol poly from transposon TNT 1-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1188contigH-elongata_contig1188:13373..13771 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score62.0
Seed ortholog evalue1.3e-07
Seed eggNOG ortholog400682.PAC_15728798
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,COG2801@1,KOG0017@2759
COG Functional cat.J
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size399
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1188.1455.1prot_H-elongata_contig1188.1455.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1188 13514..13735 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929695.102836-UTR-H-elongata_contig1188:13372..135131622929695.102836-UTR-H-elongata_contig1188:13372..13513Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1188 13373..13513 -
1691679121.985856-UTR-H-elongata_contig1188:13372..135131691679121.985856-UTR-H-elongata_contig1188:13372..13513Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1188 13373..13513 -
1622929695.1351612-UTR-H-elongata_contig1188:13735..137711622929695.1351612-UTR-H-elongata_contig1188:13735..13771Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1188 13736..13771 -
1691679122.0067523-UTR-H-elongata_contig1188:13735..137711691679122.0067523-UTR-H-elongata_contig1188:13735..13771Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1188 13736..13771 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929695.120083-CDS-H-elongata_contig1188:13513..137351622929695.120083-CDS-H-elongata_contig1188:13513..13735Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1188 13514..13735 -
1691679121.99739-CDS-H-elongata_contig1188:13513..137351691679121.99739-CDS-H-elongata_contig1188:13513..13735Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1188 13514..13735 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1188.1455.1

>prot_H-elongata_contig1188.1455.1 ID=prot_H-elongata_contig1188.1455.1|Name=mRNA_H-elongata_contig1188.1455.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MESLEWDDWWKAEETEMRGMVENCVYKQVARPKDKLVVGTKMLYKREVGQ
DDKVEKYKCRLVAQGFWQVEGVH*
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mRNA from alignment at H-elongata_contig1188:13373..13771-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1188.1455.1 ID=mRNA_H-elongata_contig1188.1455.1|Name=mRNA_H-elongata_contig1188.1455.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=399bp|location=Sequence derived from alignment at H-elongata_contig1188:13373..13771- (Himanthalia elongata Himel1 dioecious)
CTGGATATACCGGAACCGAGGAATCGGCGGCAGGCGATGGAATCGCTGGA ATGGGACGATTGGTGGAAAGCAGAGGAAACAGAAATGCGTGGCATGGTCG AGAACTGCGTTTATAAGCAGGTTGCTCGGCCGAAGGATAAGCTCGTGGTT GGCACAAAAATGCTCTACAAACGAGAGGTTGGACAGGACGACAAGGTCGA GAAATACAAGTGCCGGCTTGTAGCTCAAGGGTTCTGGCAGGTGGAAGGTG TGCACTAGACGGAAAAATACTCGCCCACACCATCGACCGCGTCAATCCGG ATGCTTTTGGCCATAGCAGCGGCCAAGGACGATGAGCTGTGCCATTTCGA CGCGGAGCAGGTGTTCTTGAAAGCGAACATCGATGAGGAGTTATATATA
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Coding sequence (CDS) from alignment at H-elongata_contig1188:13373..13771-

>mRNA_H-elongata_contig1188.1455.1 ID=mRNA_H-elongata_contig1188.1455.1|Name=mRNA_H-elongata_contig1188.1455.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig1188:13373..13771- (Himanthalia elongata Himel1 dioecious)
ATGGAATCGCTGGAATGGGACGATTGGTGGAAAGCAGAGGAAACAGAAAT
GCGTGGCATGGTCGAGAACTGCGTTTATAAGCAGGTTGCTCGGCCGAAGG
ATAAGCTCGTGGTTGGCACAAAAATGCTCTACAAACGAGAGGTTGGACAG
GACGACAAGGTCGAGAAATACAAGTGCCGGCTTGTAGCTCAAGGGTTCTG
GCAGGTGGAAGGTGTGCACTAGATGGAATCGCTGGAATGGGACGATTGGT
GGAAAGCAGAGGAAACAGAAATGCGTGGCATGGTCGAGAACTGCGTTTAT
AAGCAGGTTGCTCGGCCGAAGGATAAGCTCGTGGTTGGCACAAAAATGCT
CTACAAACGAGAGGTTGGACAGGACGACAAGGTCGAGAAATACAAGTGCC
GGCTTGTAGCTCAAGGGTTCTGGCAGGTGGAAGGTGTGCACTAG
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