mRNA_H-elongata_contig1188.1455.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1188.1455.1 vs. uniprot
Match: UPI001C988E4D (hypothetical protein n=3 Tax=Bacteria TaxID=2 RepID=UPI001C988E4D) HSP 1 Score: 100 bits (249), Expect = 9.810e-23 Identity = 55/129 (42.64%), Postives = 78/129 (60.47%), Query Frame = 1
Query: 13 EPRNRRQAMESLEWDDWWKAEETEMRGMVENCVYKQVARPKDKLVVGTKMLYKREVGQDDKVEKYKCRLVAQGFWQVEGVH*TEKYSPTPSTASIRMLLAIAAAKDDELCHFDAEQVFLKANIDEELYI 399
+P AM ++ W +A ++EM M N V+ V P+ + +G K +YKR++G D KVE YK RLVA+G+ Q +GV E +SP SIR+LLAIAA D E+C D + FL NI+E+LY+
Sbjct: 88 DPTTYEGAMLDIDSSRWQEAMKSEMDSMYSNGVWTLVDPPEGIVPIGCKWIYKRKIGSDGKVETYKARLVAKGYNQKQGVDYEETFSPVAMLKSIRILLAIAAYYDYEICQMDVKTAFLNGNIEEDLYM 216
BLAST of mRNA_H-elongata_contig1188.1455.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 102 bits (253), Expect = 1.510e-22 Identity = 52/131 (39.69%), Postives = 83/131 (63.36%), Query Frame = 1
Query: 7 IPEPRNRRQAMESLEWDDWWKAEETEMRGMVENCVYKQVARPKDKLVVGTKMLYKREVGQDDKVEKYKCRLVAQGFWQVEGVH*TEKYSPTPSTASIRMLLAIAAAKDDELCHFDAEQVFLKANIDEELYI 399
+ +P + AM + +W KA E E+ + V+++V RP+D+ ++G+K ++K + G D +VEKYK RLVAQGF QVEG+ E ++P + SIR+LLA+AA D E+ D + FL ++EE+Y+
Sbjct: 992 LGDPLSYVDAMSQEDAAEWRKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYM 1122
BLAST of mRNA_H-elongata_contig1188.1455.1 vs. uniprot
Match: UPI001C97B5BC (DDE-type integrase/transposase/recombinase n=2 Tax=Actinobacteria TaxID=201174 RepID=UPI001C97B5BC) HSP 1 Score: 100 bits (249), Expect = 5.030e-22 Identity = 55/129 (42.64%), Postives = 78/129 (60.47%), Query Frame = 1
Query: 13 EPRNRRQAMESLEWDDWWKAEETEMRGMVENCVYKQVARPKDKLVVGTKMLYKREVGQDDKVEKYKCRLVAQGFWQVEGVH*TEKYSPTPSTASIRMLLAIAAAKDDELCHFDAEQVFLKANIDEELYI 399
+P AM ++ W +A E+EM M N V+ V P+ + +G K +YKR++G D KVE YK RLVA+G+ Q +GV + +SP SIR+LLAIAA D E+C D + FL NI+E+LY+
Sbjct: 480 DPTTYEGAMLDIDSTRWQQAMESEMDSMYSNQVWTLVNPPEGIVPIGCKWIYKRKIGSDGKVETYKARLVAKGYNQKQGVDYEDTFSPVAMLKSIRILLAIAAHYDYEICQMDVKTAFLNGNIEEDLYM 608
BLAST of mRNA_H-elongata_contig1188.1455.1 vs. uniprot
Match: A0A1C7MSU6_GRIFR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MSU6_GRIFR) HSP 1 Score: 98.6 bits (244), Expect = 2.350e-21 Identity = 52/131 (39.69%), Postives = 83/131 (63.36%), Query Frame = 1
Query: 7 IPEPRNRRQAMESLEWDDWWKAEETEMRGMVENCVYKQVARPKDKLVVGTKMLYKREVGQDDKVEKYKCRLVAQGFWQVEGVH*TEKYSPTPSTASIRMLLAIAAAKDDELCHFDAEQVFLKANIDEELYI 399
+ +P++ +AM + + W A E+ V+ +Y +V RP+D+ VVG K +++ + G D ++EKYK R+VA+GF QVEGV T+ ++P ASIR LLA+AA D E+ D + FL N+DEE+++
Sbjct: 279 LDDPQSYEEAMSRPDAERWKAACAEELLTFVKAELYDEVERPRDRKVVGCKWVFRIKRGPDGEIEKYKARVVAKGFTQVEGVDYTDTFAPVTKFASIRALLALAAKLDLEIHQMDVKSAFLNGNLDEEIFM 409
BLAST of mRNA_H-elongata_contig1188.1455.1 vs. uniprot
Match: A0A7D9D6Q5_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D6Q5_PARCT) HSP 1 Score: 95.9 bits (237), Expect = 2.110e-20 Identity = 51/132 (38.64%), Postives = 83/132 (62.88%), Query Frame = 1
Query: 4 DIPEPRNRRQAMESLEWDDWWKAEETEMRGMVENCVYKQVARPKDKLVVGTKMLYKREVGQDDKVEKYKCRLVAQGFWQVEGVH*TEKYSPTPSTASIRMLLAIAAAKDDELCHFDAEQVFLKANIDEELYI 399
DI EP N +A +W +A ++E ++EN ++ V+ PK K VVG+K ++K + ++ V++YK RLVAQG+ Q EGV +E +SP +IR LLA++ AK+ E+ D + FL+ N++EE+Y+
Sbjct: 806 DINEPINMDEAFSGEHSAEWKQATDSENNSLIENETWELVSLPKGKNVVGSKWVFKVKTDENGCVQRYKARLVAQGYTQAEGVDYSEVFSPVVRNTTIRSLLALSNAKNWEVHQMDVKTAFLQGNLEEEIYM 937
BLAST of mRNA_H-elongata_contig1188.1455.1 vs. uniprot
Match: A0A1V9YIL7_9STRA (RNA-dependent DNA polymerase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YIL7_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 1.030e-19 Identity = 49/131 (37.40%), Postives = 80/131 (61.07%), Query Frame = 1
Query: 7 IPEPRNRRQAMESLEWDDWWKAEETEMRGMVENCVYKQVARPKDKLVVGTKMLYKREVGQDDKVEKYKCRLVAQGFWQVEGVH*TEKYSPTPSTASIRMLLAIAAAKDDELCHFDAEQVFLKANIDEELYI 399
+ EPRN +A+ + +W A ++E+ +++N ++ VA+P D +VG K +YK + + +VE++K RLVAQGF Q GV TE +SP S+R+LL IA D + H D Q ++KA++D +Y+
Sbjct: 1239 VNEPRNPSEALNGPQAKEWQTAMQSEIDNLIQNGTWELVAKPTDTNIVGHKWVYKVKFDSNGEVERFKARLVAQGFSQRYGVDFTETFSPVIRQPSVRILLVIATHLDVPVLHLDVPQAYVKADLDTTVYM 1369
BLAST of mRNA_H-elongata_contig1188.1455.1 vs. uniprot
Match: A0A5N6LDI3_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LDI3_9ASTR) HSP 1 Score: 93.2 bits (230), Expect = 1.560e-19 Identity = 49/133 (36.84%), Postives = 77/133 (57.89%), Query Frame = 1
Query: 1 LDIPEPRNRRQAMESLEWDDWWKAEETEMRGMVENCVYKQVARPKDKLVVGTKMLYKREVGQDDKVEKYKCRLVAQGFWQVEGVH*TEKYSPTPSTASIRMLLAIAAAKDDELCHFDAEQVFLKANIDEELYI 399
+D EP R AM ++D W +A EM+ M +N V++ V P VVG+K ++K++ ++ YK RLVA+G+ Q +GV E +SP SIR+L AIAA D E+C D + FL ++E++++
Sbjct: 40 VDSDEPTTYRDAMSKPDFDKWKEAMNIEMQSMYDNQVWELVTPPIKSKVVGSKWVFKKKTDMHGNLDTYKARLVAKGYTQTQGVDYDETFSPVAMLKSIRILFAIAAYYDYEICQMDVKTAFLNGYLEEDVHM 172
BLAST of mRNA_H-elongata_contig1188.1455.1 vs. uniprot
Match: A0A6S7GWB8_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GWB8_PARCT) HSP 1 Score: 92.8 bits (229), Expect = 2.430e-19 Identity = 51/132 (38.64%), Postives = 78/132 (59.09%), Query Frame = 1
Query: 4 DIPEPRNRRQAMESLEWDDWWKAEETEMRGMVENCVYKQVARPKDKLVVGTKMLYKREVGQDDKVEKYKCRLVAQGFWQVEGVH*TEKYSPTPSTASIRMLLAIAAAKDDELCHFDAEQVFLKANIDEELYI 399
DI EPRN +A + W KA ++E ++EN ++ V P DK +VG++ ++K + D VEK+K RLVAQG+ Q EG+ E +SP SIR LLA+A D E+ D + FL+ ++ +E+Y+
Sbjct: 549 DINEPRNISEAWSNEYNTQWKKATDSEFNALMENGTWELVPPPDDKNIVGSRWVFKVKRKADGSVEKFKARLVAQGYSQTEGIDYNEVFSPVVRNTSIRSLLALANILDWEIHQMDVKTAFLQGDLTDEIYM 680
BLAST of mRNA_H-elongata_contig1188.1455.1 vs. uniprot
Match: M4CW55_BRARP (Integrase catalytic domain-containing protein n=1 Tax=Brassica rapa subsp. pekinensis TaxID=51351 RepID=M4CW55_BRARP) HSP 1 Score: 92.8 bits (229), Expect = 2.550e-19 Identity = 51/131 (38.93%), Postives = 78/131 (59.54%), Query Frame = 1
Query: 7 IPEPRNRRQAMESLEWDDWWKAEETEMRGMVENCVYKQVARPKDKLVVGTKMLYKREVGQDDKVEKYKCRLVAQGFWQVEGVH*TEKYSPTPSTASIRMLLAIAAAKDDELCHFDAEQVFLKANIDEELYI 399
IPEPRN QA + EW D A E+ + EN + + P+ K VG K ++K ++ D +E+YK RLVA+G+ Q EG+ E +SP +++++LLA+AAAK+ L D FL ++DEE+Y+
Sbjct: 713 IPEPRNFDQACKLKEWCD---AMGIEITALEENNTWLVCSLPEGKRAVGCKWVFKVKLNADGTLERYKARLVAKGYTQQEGIDYVETFSPVAKLSTVKLLLAVAAAKNWSLSQLDVSNAFLNGDLDEEIYM 840
BLAST of mRNA_H-elongata_contig1188.1455.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT) HSP 1 Score: 92.4 bits (228), Expect = 3.500e-19 Identity = 51/132 (38.64%), Postives = 77/132 (58.33%), Query Frame = 1
Query: 4 DIPEPRNRRQAMESLEWDDWWKAEETEMRGMVENCVYKQVARPKDKLVVGTKMLYKREVGQDDKVEKYKCRLVAQGFWQVEGVH*TEKYSPTPSTASIRMLLAIAAAKDDELCHFDAEQVFLKANIDEELYI 399
DI EPRN +A + W KA ++E ++EN ++ V P DK +VG++ ++K + D VEK+K RLVAQG+ Q EG+ E +SP SIR LLA+A D E+ D FL+ ++ +E+Y+
Sbjct: 829 DINEPRNISEAWSNEYNTQWKKATDSEFNALMENGTWELVPPPDDKNIVGSRWVFKVKRKADGSVEKFKARLVAQGYSQTEGIDYNEVFSPVVRNTSIRSLLALANILDWEIHQMDVRTAFLQGDLTDEIYM 960 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1188.1455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1188.1455.1 >prot_H-elongata_contig1188.1455.1 ID=prot_H-elongata_contig1188.1455.1|Name=mRNA_H-elongata_contig1188.1455.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp MESLEWDDWWKAEETEMRGMVENCVYKQVARPKDKLVVGTKMLYKREVGQback to top mRNA from alignment at H-elongata_contig1188:13373..13771- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1188.1455.1 ID=mRNA_H-elongata_contig1188.1455.1|Name=mRNA_H-elongata_contig1188.1455.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=399bp|location=Sequence derived from alignment at H-elongata_contig1188:13373..13771- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1188:13373..13771- >mRNA_H-elongata_contig1188.1455.1 ID=mRNA_H-elongata_contig1188.1455.1|Name=mRNA_H-elongata_contig1188.1455.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig1188:13373..13771- (Himanthalia elongata Himel1 dioecious)back to top |