mRNA_H-elongata_contig118799.1453.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig118799.1453.1
Unique NamemRNA_H-elongata_contig118799.1453.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig118799.1453.1 vs. uniprot
Match: A0A2S1PRV6_FUCSE (Putative dicer (Fragment) n=1 Tax=Fucus serratus TaxID=87148 RepID=A0A2S1PRV6_FUCSE)

HSP 1 Score: 158 bits (400), Expect = 6.510e-41
Identity = 117/254 (46.06%), Postives = 141/254 (55.51%), Query Frame = 1 
Query:    1 VESRKTYDPVVT-PVGSKESRAKATMPIPRPIAMGILPTPVADFEQARLAVWKKTVE-LLPDADCQKISS------------PPANGAVAPKVTSAVVAAMAPLGGPMALE---------QPTHLKKITCQD-EASEPSASELCPARVGTSNEEGGGA-----RWRGCYEGVPGPKRRMRVYCFRSPPGELDGWVPSSKEPRIRKATLRGGKRGASGKKEDEVK----------EATESKPEEEEGDDGSDDEV 645
            VE+RKT+DPVV   V  +ESR KAT+P+PRPIAMGILPTP  D EQARLA W+K  +  LPDA+  K +             P  +  V   V +A  A  A  GG +A           + T++      D E    SASE  P    T+ ++   A     R RGCYEGVPGPKRRMRVYCFRSPP EL+ WVPSS EPR R+AT    KR ASGK E E +          E  + +P EE+G DG DDE 
Sbjct:  193 VENRKTFDPVVPLEVEVRESREKATLPVPRPIAMGILPTPAVDVEQARLAAWEKHAKRFLPDAERGKSAMQEKGFQGGVDVIPFDDVVVGQGVATAAEARAAAAGGAVAFRASVIASSGGRATNVGTEESTDREKCVSSASESAPPM--TTGDDSAAAWEDAKRPRGCYEGVPGPKRRMRVYCFRSPPRELNAWVPSSNEPRTRRATAGDYKRSASGKVEGEDESGGAKGVEDDETLKEEPAEEDGGDGGDDEA 444
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BLAST of mRNA_H-elongata_contig118799.1453.1 vs. uniprot
Match: A0A6H5KQM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQM7_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.080e-20
Identity = 79/206 (38.35%), Postives = 91/206 (44.17%), Query Frame = 1 
Query:    1 VESRKTYDPVVTPVGSKESRAKATMPIPRPIAMGILPTPVADFEQARLAVWKKTVELLPDADCQKISSPPANGAVAPKVTSAVVAAMAPLGGPMALEQPTHLKKITCQDEASEPSASELCPARVGTSNEEGG-------------------------GARWRGCYEGVPGPKRRMRVYCFRSPPGELDGWVPSSKEPRIRKATLRG 543
            VE R+ YDPV+  V  KE+R KA MPIPRP+AMGILPTP  +F+ A +A W         AD         NGA      S                        T     S PS        VG  +E G                          GAR RGCYE  PGPKRRMRVYCFRSP GE +GWVP+ K  R R++ L G
Sbjct:  871 VEKRRGYDPVL--VEGKEARMKAKMPIPRPVAMGILPTPGVEFDAAWMAAWMA-------AD--------GNGA------SNEXXXXXXXXXXXXXXXXXXXXXXTAATAGSPPST-----CAVGDGSEGGXXXXXXXXXXXXXXXXXXXAGFAVWEGARTRGCYEDDPGPKRRMRVYCFRSPAGEAEGWVPTLKRVRKRRSELDG 1048
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BLAST of mRNA_H-elongata_contig118799.1453.1 vs. uniprot
Match: D7FZW2_ECTSI (Dicer-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW2_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 4.690e-5
Identity = 26/44 (59.09%), Postives = 28/44 (63.64%), Query Frame = 1 
Query:  340 PSASELCPARVGTSNEEGGGARWRGCYEGVPGPKRRMRVYCFRS 471
            P A  + PA  G       GAR RGCYE  PGPKRRMRVYCFR+
Sbjct:  700 PGAPGIGPAAAGAGFAVWEGARTRGCYEDDPGPKRRMRVYCFRT 743
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118799.1453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2S1PRV6_FUCSE6.510e-4146.06Putative dicer (Fragment) n=1 Tax=Fucus serratus T... [more]
A0A6H5KQM7_9PHAE1.080e-2038.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZW2_ECTSI4.690e-559.09Dicer-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118799contigH-elongata_contig118799:395..1066 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size672
Cds size672
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929694.9624534-CDS-H-elongata_contig118799:394..10661622929694.9624534-CDS-H-elongata_contig118799:394..1066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118799 395..1066 -
1691679121.955492-CDS-H-elongata_contig118799:394..10661691679121.955492-CDS-H-elongata_contig118799:394..1066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118799 395..1066 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118799.1453.1prot_H-elongata_contig118799.1453.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig118799 395..1066 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig118799.1453.1

>prot_H-elongata_contig118799.1453.1 ID=prot_H-elongata_contig118799.1453.1|Name=mRNA_H-elongata_contig118799.1453.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=224bp
VESRKTYDPVVTPVGSKESRAKATMPIPRPIAMGILPTPVADFEQARLAV
WKKTVELLPDADCQKISSPPANGAVAPKVTSAVVAAMAPLGGPMALEQPT
HLKKITCQDEASEPSASELCPARVGTSNEEGGGARWRGCYEGVPGPKRRM
RVYCFRSPPGELDGWVPSSKEPRIRKATLRGGKRGASGKKEDEVKEATES
KPEEEEGDDGSDDEVCWGGGVRG*
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mRNA from alignment at H-elongata_contig118799:395..1066-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig118799.1453.1 ID=mRNA_H-elongata_contig118799.1453.1|Name=mRNA_H-elongata_contig118799.1453.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=672bp|location=Sequence derived from alignment at H-elongata_contig118799:395..1066- (Himanthalia elongata Himel1 dioecious)
GTGGAAAGTCGCAAGACCTATGATCCTGTTGTGACGCCGGTAGGGAGCAA
GGAGAGCCGGGCGAAGGCCACCATGCCTATTCCGCGGCCGATCGCGATGG
GGATCCTACCGACTCCAGTCGCGGACTTCGAGCAAGCGAGGCTCGCGGTT
TGGAAAAAAACTGTGGAGCTACTACCCGACGCTGATTGTCAGAAGATATC
GTCGCCGCCAGCGAACGGTGCCGTAGCTCCAAAAGTAACATCAGCGGTAG
TAGCAGCAATGGCACCTTTGGGCGGGCCCATGGCGCTCGAGCAACCCACC
CACCTAAAGAAAATCACTTGCCAAGATGAGGCAAGCGAACCTAGTGCGTC
GGAATTGTGTCCCGCAAGGGTTGGCACTTCGAACGAAGAGGGAGGCGGCG
CGAGATGGAGGGGCTGTTACGAGGGTGTCCCCGGGCCGAAGCGCCGGATG
AGGGTGTACTGCTTCCGCAGCCCCCCCGGGGAGCTCGATGGCTGGGTTCC
CTCCTCCAAGGAGCCGAGGATACGGAAGGCGACTCTGAGGGGGGGTAAAC
GCGGTGCTTCGGGGAAGAAGGAAGACGAGGTCAAAGAGGCTACGGAGAGC
AAGCCCGAGGAGGAAGAAGGAGACGATGGAAGTGATGATGAGGTTTGTTG
GGGAGGAGGTGTTAGGGGATAG
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Coding sequence (CDS) from alignment at H-elongata_contig118799:395..1066-

>mRNA_H-elongata_contig118799.1453.1 ID=mRNA_H-elongata_contig118799.1453.1|Name=mRNA_H-elongata_contig118799.1453.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1344bp|location=Sequence derived from alignment at H-elongata_contig118799:395..1066- (Himanthalia elongata Himel1 dioecious)
GTGGAAAGTCGCAAGACCTATGATCCTGTTGTGACGCCGGTAGGGAGCAA
GGAGAGCCGGGCGAAGGCCACCATGCCTATTCCGCGGCCGATCGCGATGG
GGATCCTACCGACTCCAGTCGCGGACTTCGAGCAAGCGAGGCTCGCGGTT
TGGAAAAAAACTGTGGAGCTACTACCCGACGCTGATTGTCAGAAGATATC
GTCGCCGCCAGCGAACGGTGCCGTAGCTCCAAAAGTAACATCAGCGGTAG
TAGCAGCAATGGCACCTTTGGGCGGGCCCATGGCGCTCGAGCAACCCACC
CACCTAAAGAAAATCACTTGCCAAGATGAGGCAAGCGAACCTAGTGCGTC
GGAATTGTGTCCCGCAAGGGTTGGCACTTCGAACGAAGAGGGAGGCGGCG
CGAGATGGAGGGGCTGTTACGAGGGTGTCCCCGGGCCGAAGCGCCGGATG
AGGGTGTACTGCTTCCGCAGCCCCCCCGGGGAGCTCGATGGCTGGGTTCC
CTCCTCCAAGGAGCCGAGGATACGGAAGGCGACTCTGAGGGGGGGTAAAC
GCGGTGCTTCGGGGAAGAAGGAAGACGAGGTCAAAGAGGCTACGGAGAGC
AAGCCCGAGGAGGAAGAAGGAGACGATGGAAGTGATGATGAGGTTTGTTG
GGGAGGAGGTGTTAGGGGATAGGTGGAAAGTCGCAAGACCTATGATCCTG
TTGTGACGCCGGTAGGGAGCAAGGAGAGCCGGGCGAAGGCCACCATGCCT
ATTCCGCGGCCGATCGCGATGGGGATCCTACCGACTCCAGTCGCGGACTT
CGAGCAAGCGAGGCTCGCGGTTTGGAAAAAAACTGTGGAGCTACTACCCG
ACGCTGATTGTCAGAAGATATCGTCGCCGCCAGCGAACGGTGCCGTAGCT
CCAAAAGTAACATCAGCGGTAGTAGCAGCAATGGCACCTTTGGGCGGGCC
CATGGCGCTCGAGCAACCCACCCACCTAAAGAAAATCACTTGCCAAGATG
AGGCAAGCGAACCTAGTGCGTCGGAATTGTGTCCCGCAAGGGTTGGCACT
TCGAACGAAGAGGGAGGCGGCGCGAGATGGAGGGGCTGTTACGAGGGTGT
CCCCGGGCCGAAGCGCCGGATGAGGGTGTACTGCTTCCGCAGCCCCCCCG
GGGAGCTCGATGGCTGGGTTCCCTCCTCCAAGGAGCCGAGGATACGGAAG
GCGACTCTGAGGGGGGGTAAACGCGGTGCTTCGGGGAAGAAGGAAGACGA
GGTCAAAGAGGCTACGGAGAGCAAGCCCGAGGAGGAAGAAGGAGACGATG
GAAGTGATGATGAGGTTTGTTGGGGAGGAGGTGTTAGGGGATAG
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