prot_H-elongata_contig118799.1453.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig118799.1453.1
Unique Nameprot_H-elongata_contig118799.1453.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length224
Homology
BLAST of mRNA_H-elongata_contig118799.1453.1 vs. uniprot
Match: A0A2S1PRV6_FUCSE (Putative dicer (Fragment) n=1 Tax=Fucus serratus TaxID=87148 RepID=A0A2S1PRV6_FUCSE)

HSP 1 Score: 158 bits (400), Expect = 6.510e-41
Identity = 117/254 (46.06%), Postives = 141/254 (55.51%), Query Frame = 0
Query:    1 VESRKTYDPVVT-PVGSKESRAKATMPIPRPIAMGILPTPVADFEQARLAVWKKTVE-LLPDADCQKISS------------PPANGAVAPKVTSAVVAAMAPLGGPMALE---------QPTHLKKITCQD-EASEPSASELCPARVGTSNEEGGGA-----RWRGCYEGVPGPKRRMRVYCFRSPPGELDGWVPSSKEPRIRKATLRGGKRGASGKKEDEVK----------EATESKPEEEEGDDGSDDEV 215
            VE+RKT+DPVV   V  +ESR KAT+P+PRPIAMGILPTP  D EQARLA W+K  +  LPDA+  K +             P  +  V   V +A  A  A  GG +A           + T++      D E    SASE  P    T+ ++   A     R RGCYEGVPGPKRRMRVYCFRSPP EL+ WVPSS EPR R+AT    KR ASGK E E +          E  + +P EE+G DG DDE 
Sbjct:  193 VENRKTFDPVVPLEVEVRESREKATLPVPRPIAMGILPTPAVDVEQARLAAWEKHAKRFLPDAERGKSAMQEKGFQGGVDVIPFDDVVVGQGVATAAEARAAAAGGAVAFRASVIASSGGRATNVGTEESTDREKCVSSASESAPPM--TTGDDSAAAWEDAKRPRGCYEGVPGPKRRMRVYCFRSPPRELNAWVPSSNEPRTRRATAGDYKRSASGKVEGEDESGGAKGVEDDETLKEEPAEEDGGDGGDDEA 444          
BLAST of mRNA_H-elongata_contig118799.1453.1 vs. uniprot
Match: A0A6H5KQM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQM7_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.080e-20
Identity = 79/206 (38.35%), Postives = 91/206 (44.17%), Query Frame = 0
Query:    1 VESRKTYDPVVTPVGSKESRAKATMPIPRPIAMGILPTPVADFEQARLAVWKKTVELLPDADCQKISSPPANGAVAPKVTSAVVAAMAPLGGPMALEQPTHLKKITCQDEASEPSASELCPARVGTSNEEGG-------------------------GARWRGCYEGVPGPKRRMRVYCFRSPPGELDGWVPSSKEPRIRKATLRG 181
            VE R+ YDPV+  V  KE+R KA MPIPRP+AMGILPTP  +F+ A +A W         AD         NGA      S                        T     S PS        VG  +E G                          GAR RGCYE  PGPKRRMRVYCFRSP GE +GWVP+ K  R R++ L G
Sbjct:  871 VEKRRGYDPVL--VEGKEARMKAKMPIPRPVAMGILPTPGVEFDAAWMAAWMA-------AD--------GNGA------SNEXXXXXXXXXXXXXXXXXXXXXXTAATAGSPPST-----CAVGDGSEGGXXXXXXXXXXXXXXXXXXXAGFAVWEGARTRGCYEDDPGPKRRMRVYCFRSPAGEAEGWVPTLKRVRKRRSELDG 1048          
BLAST of mRNA_H-elongata_contig118799.1453.1 vs. uniprot
Match: D7FZW2_ECTSI (Dicer-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW2_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 4.690e-5
Identity = 26/44 (59.09%), Postives = 28/44 (63.64%), Query Frame = 0
Query:  114 PSASELCPARVGTSNEEGGGARWRGCYEGVPGPKRRMRVYCFRS 157
            P A  + PA  G       GAR RGCYE  PGPKRRMRVYCFR+
Sbjct:  700 PGAPGIGPAAAGAGFAVWEGARTRGCYEDDPGPKRRMRVYCFRT 743          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118799.1453.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2S1PRV6_FUCSE6.510e-4146.06Putative dicer (Fragment) n=1 Tax=Fucus serratus T... [more]
A0A6H5KQM7_9PHAE1.080e-2038.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZW2_ECTSI4.690e-559.09Dicer-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118799contigH-elongata_contig118799:395..1066 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118799.1453.1mRNA_H-elongata_contig118799.1453.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig118799 395..1066 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig118799.1453.1 ID=prot_H-elongata_contig118799.1453.1|Name=mRNA_H-elongata_contig118799.1453.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=224bp
VESRKTYDPVVTPVGSKESRAKATMPIPRPIAMGILPTPVADFEQARLAV
WKKTVELLPDADCQKISSPPANGAVAPKVTSAVVAAMAPLGGPMALEQPT
HLKKITCQDEASEPSASELCPARVGTSNEEGGGARWRGCYEGVPGPKRRM
RVYCFRSPPGELDGWVPSSKEPRIRKATLRGGKRGASGKKEDEVKEATES
KPEEEEGDDGSDDEVCWGGGVRG*
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