mRNA_H-elongata_contig118729.1449.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig118729.1449.1
Unique NamemRNA_H-elongata_contig118729.1449.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig118729.1449.1 vs. uniprot
Match: D8LMQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMQ8_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 2.080e-46
Identity = 80/98 (81.63%), Postives = 86/98 (87.76%), Query Frame = 1
Query:    1 QSLLSLAFFGGFAGYLASQF--VFVPAFLLALGGGGFLAYLATTKNARGDLARLLGMRVVAFLRLVSEIDSDVGLSRKARVVGGICFSKAMFWDSKYH 288
            +SLLS+AF GGFAGYL SQF  VF+P F+LALGGGGFLAYLATTKNARGDL RLLGMR VAFL LVSEI+SDV LS K +VVGGICFSKAMFWD KYH
Sbjct:  112 KSLLSVAFLGGFAGYLVSQFPFVFLPTFMLALGGGGFLAYLATTKNARGDLTRLLGMRTVAFLGLVSEINSDVALSAKGKVVGGICFSKAMFWDRKYH 209          
BLAST of mRNA_H-elongata_contig118729.1449.1 vs. uniprot
Match: A0A6H5K822_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K822_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 2.440e-44
Identity = 81/98 (82.65%), Postives = 86/98 (87.76%), Query Frame = 1
Query:    1 QSLLSLAFFGGFAGYLASQF--VFVPAFLLALGGGGFLAYLATTKNARGDLARLLGMRVVAFLRLVSEIDSDVGLSRKARVVGGICFSKAMFWDSKYH 288
            +SLLS+AF GGFAGYL SQF  VF+P F+LALGGGGFLAYLAT KNARGDL RLLGMR VAFL LVSEIDSDV LS KA+VVGGICFSKAMFWD KYH
Sbjct:  330 KSLLSVAFLGGFAGYLVSQFPFVFLPTFMLALGGGGFLAYLATMKNARGDLTRLLGMRTVAFLGLVSEIDSDVALSAKAKVVGGICFSKAMFWDRKYH 427          
BLAST of mRNA_H-elongata_contig118729.1449.1 vs. uniprot
Match: A0A4D9CPT7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CPT7_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 8.750e-13
Identity = 41/98 (41.84%), Postives = 60/98 (61.22%), Query Frame = 1
Query:    1 QSLLSLAFFGGFAGYLASQFV---FVPAFLLALGGGGFLAYLATTKNARGDLARLLGMRVVAFLRLVSEIDSDVGLSRKARVVGGICFSKAMFWDSKY 285
            Q+L  L F G F GYL + F+   F+PA+LLAL GGG   Y AT ++  GD+AR LGM++VA L LV  ++ ++ + RK   V  I +  A   D+++
Sbjct:  357 QTLAVLVFVGAFLGYLLAHFISLFFLPAWLLALAGGGLGGYTATLRDRGGDMARCLGMKLVAVLGLVRALEQELLVWRKLGKVFHISYGHAAALDARW 454          
BLAST of mRNA_H-elongata_contig118729.1449.1 vs. uniprot
Match: A0A7S2A8I8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A8I8_TRICV)

HSP 1 Score: 71.6 bits (174), Expect = 9.730e-13
Identity = 38/92 (41.30%), Postives = 58/92 (63.04%), Query Frame = 1
Query:   10 LSLAFFGGFAGYLASQFVFVPAFLLALGGGGFLAYLATTKNARGDLARLLGMRVVAFLRLVSEIDSDVGLSRKARVVGGICFSKAMFWDSKY 285
            ++ A  GG  G   S    +P+++ A GG   LA+L+T ++ARGDLAR  GMRVVA L  + E+++++G++ KA  VGG  F + M  D K+
Sbjct:  186 IAAAAVGGICG---SDLPLIPSWMGAAGGAAALAFLSTLRSARGDLARTAGMRVVAILTELLEVNNELGVAGKAATVGGKIFDRVMILDRKH 274          
BLAST of mRNA_H-elongata_contig118729.1449.1 vs. uniprot
Match: K0R9T8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R9T8_THAOC)

HSP 1 Score: 66.2 bits (160), Expect = 1.280e-10
Identity = 35/94 (37.23%), Postives = 53/94 (56.38%), Query Frame = 1
Query:    4 SLLSLAFFGGFAGYLASQFVFVPAFLLALGGGGFLAYLATTKNARGDLARLLGMRVVAFLRLVSEIDSDVGLSRKARVVGGICFSKAMFWDSKY 285
            SLL++ F G F G        +PA++ ++ G    A +    NARGDL R +GMR+V   ++  EI+S++ + RK   VGG+ F K M  D K+
Sbjct:  406 SLLTMGFVGSFCG---GNVPIIPAWMGSIAGALMFAAMTMGSNARGDLGRSMGMRMVGLGKVALEINSELSILRKGATVGGLIFDKIMVMDRKH 496          
BLAST of mRNA_H-elongata_contig118729.1449.1 vs. uniprot
Match: B8BT22_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BT22_THAPS)

HSP 1 Score: 66.2 bits (160), Expect = 1.290e-10
Identity = 38/94 (40.43%), Postives = 54/94 (57.45%), Query Frame = 1
Query:    4 SLLSLAFFGGFAGYLASQFVFVPAFLLALGGGGFLAYLATTKNARGDLARLLGMRVVAFLRLVSEIDSDVGLSRKARVVGGICFSKAMFWDSKY 285
            +LL++A  G F G        +PA++  + G    A L +  NARGDL R +GMRVV  L+LV  I+S++ +  KA  VGG+ F K M  D K+
Sbjct:  450 ALLAMAMVGSFCG---GNVPLLPAWMGGIVGAVVFASLTSGANARGDLGRTMGMRVVGLLQLVLTINSELRILGKAATVGGLIFDKIMIMDRKH 540          
BLAST of mRNA_H-elongata_contig118729.1449.1 vs. uniprot
Match: A0A7S0GJQ1_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GJQ1_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.210e-8
Identity = 32/95 (33.68%), Postives = 52/95 (54.74%), Query Frame = 1
Query:    1 QSLLSLAFFGGFAGYLASQFVFVPAFLLALGGGGFLAYLATTKNARGDLARLLGMRVVAFLRLVSEIDSDVGLSRKARVVGGICFSKAMFWDSKY 285
            Q L S+A               +P ++ ++ G    A++ T K+A+GDLAR +GM+VVAF++ +  I+S++ +  K  VV G  F K M  D K+
Sbjct:  103 QMLYSVAVMAFAGSICVGNMPLIPTWIGSMAGAAAFAFVTTLKSAKGDLARTMGMKVVAFVQEMVAINSELSVLSKTSVVCGKIFDKLMVLDRKH 197          
BLAST of mRNA_H-elongata_contig118729.1449.1 vs. uniprot
Match: B7FXM6_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FXM6_PHATC)

HSP 1 Score: 60.1 bits (144), Expect = 1.860e-8
Identity = 33/94 (35.11%), Postives = 53/94 (56.38%), Query Frame = 1
Query:    4 SLLSLAFFGGFAGYLASQFVFVPAFLLALGGGGFLAYLATTKNARGDLARLLGMRVVAFLRLVSEIDSDVGLSRKARVVGGICFSKAMFWDSKY 285
            S++++ F G   G        +PA++ AL G G  A+  T +NA+GDLAR +GMRVV+  + + +I+ ++ L  K  VV G    K +  D K+
Sbjct:  304 SVIAMGFVGSACG---GNLPLIPAWIGALAGAGSFAFWTTARNAQGDLARTIGMRVVSLAQEILQINYELELLSKFGVVSGKVLDKLLILDRKH 394          
BLAST of mRNA_H-elongata_contig118729.1449.1 vs. uniprot
Match: A0A7S1B5X1_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B5X1_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.220e-7
Identity = 27/59 (45.76%), Postives = 40/59 (67.80%), Query Frame = 1
Query:  109 AYLATTKNARGDLARLLGMRVVAFLRLVSEIDSDVGLSRKARVVGGICFSKAMFWDSKY 285
            A+L T K+ +GDLAR +GMRVVA  + + +I++++GL  K  +V GI F K M  D K+
Sbjct:  430 AFLVTVKSNKGDLARCMGMRVVAAFQELLDINAEIGLVEKLMIVVGIIFDKFMILDRKH 488          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118729.1449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LMQ8_ECTSI2.080e-4681.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K822_9PHAE2.440e-4482.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9CPT7_9STRA8.750e-1341.84Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2A8I8_TRICV9.730e-1341.30Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
K0R9T8_THAOC1.280e-1037.23Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
B8BT22_THAPS1.290e-1040.43Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S0GJQ1_9STRA1.210e-833.68Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
B7FXM6_PHATC1.860e-835.11Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S1B5X1_9STRA1.220e-745.76Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118729contigH-elongata_contig118729:980..1907 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.5
Seed ortholog evalue3.1e-36
Seed eggNOG ortholog2880.D8LMQ8
EggNOG OGs2E303@1,2SA5N@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons2
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929694.6657405-CDS-H-elongata_contig118729:979..11361622929694.6657405-CDS-H-elongata_contig118729:979..1136Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118729 980..1136 -
1691679121.8393745-CDS-H-elongata_contig118729:979..11361691679121.8393745-CDS-H-elongata_contig118729:979..1136Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118729 980..1136 -
1622929694.69996-CDS-H-elongata_contig118729:1776..19071622929694.69996-CDS-H-elongata_contig118729:1776..1907Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118729 1777..1907 -
1691679121.86029-CDS-H-elongata_contig118729:1776..19071691679121.86029-CDS-H-elongata_contig118729:1776..1907Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118729 1777..1907 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118729.1449.1prot_H-elongata_contig118729.1449.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig118729 980..1907 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig118729.1449.1

>prot_H-elongata_contig118729.1449.1 ID=prot_H-elongata_contig118729.1449.1|Name=mRNA_H-elongata_contig118729.1449.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
QSLLSLAFFGGFAGYLASQFVFVPAFLLALGGGGFLAYLATTKNARGDLA
RLLGMRVVAFLRLVSEIDSDVGLSRKARVVGGICFSKAMFWDSKYH
back to top

mRNA from alignment at H-elongata_contig118729:980..1907-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig118729.1449.1 ID=mRNA_H-elongata_contig118729.1449.1|Name=mRNA_H-elongata_contig118729.1449.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=928bp|location=Sequence derived from alignment at H-elongata_contig118729:980..1907- (Himanthalia elongata Himel1 dioecious)
CAGTCGCTGCTGTCTTTAGCATTCTTTGGTGGGTTCGCGGGATACCTGGC GTCGCAGTTTGTGTTTGTTCCAGCCTTCCTCCTGGCGCTCGGCGGGGGGG GCTTCCTGGCCTACCTCGCTACCACGAAAAAGTGAGTCTTCCATTCGGGC GGGCTACTGCTGATGCTTAAGCCACTGATAACAAGTTTGGTCACTACTGC GGCAAAGCCTGTATTAATAGTATCATTAGTATTAGTATTATTAGTATTAA TACTATTAGTAGTATTAGTATTAGTAGTATTAATAGTATTAATAGTATTA GTAGTATAAGTATTATAATCAGCAGGAAACTCATAATGTGTGTGTGTGTG TGTGTGTATATATGTACGTGTATGTTTGCAGTGCGTCACAACGAGAACTA ACTCATGAAATAGTTGCGGCACGCGCTCTTCCCTCGTTTGACGAGGCCAG CTAGGTCTCACGGTGAAGTCAACGGACTCCCACTCGTGACTGACATCCGC GAAACCTCGGCTTCAGCGAGGTTTTCCTGAGTCACCCCGAGATCGGGGTT CTGTCATCGCGTGTTCGATATCGGTCGAAATATGTGTGGGGCAGGGTGGG AAGAGGGGTCGATAAAAAGACGGAAGTACATTCCTAACTCAGGGGAAAAA ATAGGACGGTGCTCGCATCGTCAAATTATTTTTCGTTTGACAGTCACCAA CCGTCGTTCGGTCGTCTGGCGCCGCCGCCCCCGCCGTCGTCGTTTCGGCG CTCTCTTTTTTGCGCGTACAGCGCTCGCGGGGACCTCGCCAGGCTCCTCG GCATGCGCGTGGTGGCTTTCCTGCGGCTGGTGTCGGAGATCGACTCGGAC GTCGGGCTGTCGCGAAAGGCGAGGGTGGTGGGAGGCATCTGCTTTTCCAA GGCGATGTTCTGGGACAGCAAGTATCAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig118729:980..1907-

>mRNA_H-elongata_contig118729.1449.1 ID=mRNA_H-elongata_contig118729.1449.1|Name=mRNA_H-elongata_contig118729.1449.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig118729:980..1907- (Himanthalia elongata Himel1 dioecious)
CAGTCGCTGCTGTCTTTAGCATTCTTTGGTGGGTTCGCGGGATACCTGGC
GTCGCAGTTTGTGTTTGTTCCAGCCTTCCTCCTGGCGCTCGGCGGGGGGG
GCTTCCTGGCCTACCTCGCTACCACGAAAAACAGTCGCTGCTGTCTTTAG
CATTCTTTGGTGGGTTCGCGGGATACCTGGCGTCGCAGTTTGTGTTTGTT
CCAGCCTTCCTCCTGGCGCTCGGCGGGGGGGGCTTCCTGGCCTACCTCGC
TACCACGAAAAACGCTCGCGGGGACCTCGCCAGGCTCCTCGGCATGCGCG
TGGTGGCTTTCCTGCGGCTGGTGTCGGAGATCGACTCGGACGTCGGGCTG
TCGCGAAAGGCGAGGGTGGTGGGAGGCATCTGCTTTTCCAAGGCGATGTT
CTGGGACAGCAAGTATCACCGCTCGCGGGGACCTCGCCAGGCTCCTCGGC
ATGCGCGTGGTGGCTTTCCTGCGGCTGGTGTCGGAGATCGACTCGGACGT
CGGGCTGTCGCGAAAGGCGAGGGTGGTGGGAGGCATCTGCTTTTCCAAGG
CGATGTTCTGGGACAGCAAGTATCAC
back to top