mRNA_H-elongata_contig118695.1445.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig118695.1445.1 vs. uniprot
Match: D8LFZ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFZ5_ECTSI) HSP 1 Score: 338 bits (868), Expect = 1.360e-106 Identity = 169/242 (69.83%), Postives = 200/242 (82.64%), Query Frame = 1
Query: 1 YKSQCLPSHVHREAAIRAVTICLGYVADLTPYLAYLFPIIMARGLQPGIFYDPELELFVHDMGEHEAYKRGRATERQDRHLPLVQSTPEDSEELRLSLCRMVGQMVVVLMNRGTIGVIRPYLDEIIIFLVTQSNDLYSAVKVEALAIFANLAVCPHLEQGMKFYAVGLARVFLPHLRHRHAKIRVAAIEALRMTVKVQDHAKVKGAGTAAIVDLVGFREDNVLPVAAFYGRGDTTVNYLAEV 726
+K P+ REA+I+AV + + +V DLTP+LAYLFP++MAR + G YDP LELFVHD EHEAYKRGRATERQD+HLP VQ E SEELRLSLCRMVG+M+ LM+RGTIGV+RPYLD+ I+ LV+Q D YSAVKVEAL+I L + PH+EQGMKFYAVG++R LPHLRHRHAK+R+AAI+ALR+ V V D AKVKGAGT+AIVDLVGFREDNVLP+AAFYGRGDTTVNYLAE+
Sbjct: 54 FKGLADPAEACREASIKAVALFMEHVPDLTPHLAYLFPVLMARAVPAGSLYDPSLELFVHDNDEHEAYKRGRATERQDQHLPQVQHIAEGSEELRLSLCRMVGRMLGKLMDRGTIGVLRPYLDDTILLLVSQFRDPYSAVKVEALSIVTTLVLHPHVEQGMKFYAVGISRAILPHLRHRHAKVRLAAIKALRLAVMVPDRAKVKGAGTSAIVDLVGFREDNVLPIAAFYGRGDTTVNYLAEL 295
BLAST of mRNA_H-elongata_contig118695.1445.1 vs. uniprot
Match: A0A836C9Q8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9Q8_9STRA) HSP 1 Score: 213 bits (543), Expect = 1.160e-59 Identity = 133/311 (42.77%), Postives = 156/311 (50.16%), Query Frame = 1
Query: 19 PSHVHREAAIRAVTICLGYVADLTPYLAYLFPIIMARGLQPGIFYDPELE---------------LFVHDMGEHEAYKRGRATERQDRHLPLVQSTPEDSEELRLSLCRMVGQMVVVLMNRGTIGVIRPYLDEIIIFLVTQSNDLYSAVKVEALAIFANLAVCPHLEQGMKFYAVGLARVFLPHLRHRHAKIRVAAIEAL------------------------------------------------------------RMTVKVQDHAKVKGAGTAAIVDLVGFREDNVLPVAAFYGRGDTTVNYLAEV 726
P RE A+R L ADLTP+LAYLFP + ARG+ PG +D E + +FVHD EHEAY+RG ATERQDR PL E SEELRL LCR+ G + L RG V+RPY D+ ++ L Q D Y +K EA LA P E GM FYA GLAR LP LRHRHA++R AA AL R V V D A+ KGAGT AIVDLVGFREDNV+PVA+FYGRGDT+VN LA++
Sbjct: 133 PGEGCRELALRLALALLRGAADLTPHLAYLFPALAARGVPPGAAFDAEAKRERGRLLTGGRRRCAVFVHDADEHEAYRRGVATERQDRTDPLRARVVEPSEELRLLLCRLAGGVARALSARGAAAVLRPYFDDAVLLLACQLRDPYPTLKAEACKELEWLACAPAYEAGMAFYATGLARALLPLLRHRHARVRAAAARALWKPAGSVRCDPRRGTTCVRISGAAVPQYDASSVSAREPPRHTSHRARCPLLSLIAARQLPRQVVMVPDRARCKGAGTEAIVDLVGFREDNVIPVASFYGRGDTSVNCLADL 443
BLAST of mRNA_H-elongata_contig118695.1445.1 vs. uniprot
Match: A0A7S1XY42_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XY42_9STRA) HSP 1 Score: 184 bits (466), Expect = 2.470e-49 Identity = 108/237 (45.57%), Postives = 139/237 (58.65%), Query Frame = 1
Query: 34 REAAIRAVTICLGYVADLTPYLAYLFPIIMARGLQPGIFYDPELELFVHDMGEHEAYKRGRATERQDRHLPLVQ-----STPEDSEELRLSLCRMVGQMVVVLMNRGTIGVIRPYLDEIIIFLVTQSNDLYSAVKVEALAIFANLAVCPHLEQGMKFYAVGLARVFLPHLRHRHAKIRVAAIEALRMTVKVQDHAKVKGAGTAAIVDLVGFREDNVLPVAAFYG-RGDTTVNYLAEV 726
RE ++ VT+ +V DLT ++ Y FP + L P YD E ++FVH++ HE +KRGRA RQDR L S + SEE+R RM+ ++ LM RG ++ PYL E I+FL Q D VK+EA LAV L G K YA+ LAR P LRHRHA++R+AA+EA+ V ++ K KGAGT AI DL+GFR DNVLPV AFY TVNYLAE+
Sbjct: 195 RELSVNLVTLFFCHVRDLTQHIGYFFP-ALCYYLNPDEAYDAETKVFVHNIDAHEEFKRGRAVIRQDRTHALDAASERVSVRDASEEMRYLYVRMLHTLLYELMERGAERILGPYLHETILFLQAQLRDPCPKVKMEACRALKRLAVSEVLTPGTKLYAIALARAVFPVLRHRHARVRLAAVEAVHAIVMIKQQEKCKGAGTEAIEDLIGFRADNVLPVGAFYNPESGITVNYLAEL 430
BLAST of mRNA_H-elongata_contig118695.1445.1 vs. uniprot
Match: A0A6U2L7V1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2L7V1_9STRA) HSP 1 Score: 177 bits (450), Expect = 1.910e-47 Identity = 99/236 (41.95%), Postives = 145/236 (61.44%), Query Frame = 1
Query: 34 REAAIRAVTICLGYVADLTPYLAYLFPIIMARGLQPGIFYDPELELFVHDMGEHEAYKRGRATERQDRHLPL----VQSTPEDSEELRLSLCRMVGQMVVVLMNRGTIGVIRPYLDEIIIFLVTQSNDLYSAVKVEALAIFANLAVCPHLEQGMKFYAVGLARVFLPHLRHRHAKIRVAAIEALRMTVKVQDHAKVKGAGTAAIVDLVGFREDNVLPVAAFY-GRGDTTVNYLAEV 726
RE ++R ++ +D ++ +L I+AR P I YD +L++FVHDM HE YKRG A ERQD+ L E SEELRL LC+++ + + RG+I ++ PYL +I++ L + S D +S VK+EA +I L P E K +++GLAR +P+LRHR++ +R+A++ V V D K+KGAG+ AI+DLVGFRE+NVLP+ AFY +VN LAE+
Sbjct: 261 RELSLRCSSVLARGASDFGKHIPFLMSAILARF--PAIIYDEDLQIFVHDMKRHEEYKRGIAVERQDKENLLSGVECLQVVEKSEELRLLLCKLISSLFRGSIRRGSISMLNPYLIDIVLALHSLSRDPFSLVKIEASSILVQLMRVPQWEMCSKHFSIGLARAAIPNLRHRNSNVRLASVILFEACVCVPDREKMKGAGSEAIIDLVGFREENVLPIGAFYKSSAGVSVNTLAEL 494
BLAST of mRNA_H-elongata_contig118695.1445.1 vs. uniprot
Match: B8C2S9_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C2S9_THAPS) HSP 1 Score: 163 bits (413), Expect = 2.030e-42 Identity = 99/220 (45.00%), Postives = 132/220 (60.00%), Query Frame = 1
Query: 82 DLTPYLAYLFPIIMARGLQPGIFYDPELELFVHDMGEHEAYKRGRATERQDRHLPLVQSTP----EDSEELRLSLCRMVGQMVVVLMNRGTIGVIRPYLDEIIIFLVTQSNDLYSAVKVEALAIFANLAVCPHLEQGMKFYAVGLARVFLPHLRHRHAKIRVAAIEALRMTVKVQDHAKVKGAGTAAIVDLVGFREDNVLPVAAFYG-RGDTTVNYLAEV 726
D+ ++ YL P + AR P YD +LE+FV D HE YKRG A +RQDR L + E SEELRL LCR ++ L+ R + ++ Y E+I L D + VKVEA I L + E G KF+A G+AR LP+ RHR+ K+ ++A++ L +V V D AKVKGAGT+AI DLVGFRE+NVLP+AAFY + +VN LAE+
Sbjct: 245 DIGRHVPYLIPALAARF--PSCSYDKDLEVFVQDSQSHELYKRGGAIDRQDRDGLLAPNCSFPVIEPSEELRLELCRTFSCLLRGLLVRDAVMILDAYFPEMIYSLQASLKDPFPNVKVEACRILVQLLRVSNWELGAKFFATGIARSVLPNCRHRNTKVVISAMDLLEASVCVPDRAKVKGAGTSAISDLVGFREENVLPIAAFYDPKYSVSVNTLAEL 462
BLAST of mRNA_H-elongata_contig118695.1445.1 vs. uniprot
Match: F0YIE1_AURAN (Expressed protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIE1_AURAN) HSP 1 Score: 162 bits (411), Expect = 5.480e-42 Identity = 96/240 (40.00%), Postives = 138/240 (57.50%), Query Frame = 1
Query: 19 PSHVHREAAIRAVTICLGYVADLTPYLAYLFPIIMARGLQPGIFYDPELELFVHDMGEHEAYKRGRATERQDRHLPLVQS----TPEDSEELRLSLCRMVGQMVVVLMNRGTIGVIRPYLDEIIIFLVTQSNDLYSAVKVEALAIFANLAVCPHLEQGMKFYAVGLARVFLPHLRHRHAKIRVAAIEALRMTVKVQDHAKVKGAGTAAIVDLVGFREDNVLPVAAFYGRGDTTVNYLAEV 726
P HRE AIR + G V DLTP++ Y+FP++ RG P + D E +FV D+ +H A+KRG+A R D + T E SEELRL LC + ++ R V+ YL E ++ L D + + ++A+ + L+ + YA LARV +P+LRHRHA++R A++A+R V V+ AK + AG+ AI DLVGFREDNV+P A+FYGR + NY+AE+
Sbjct: 135 PVEKHRERAIRVLNGLCGRVRDLTPHMPYVFPMLHGRG-SPAVGLDVEAGIFVFDLEDHAAFKRGKAQARPDLACAFERERTLRTREPSEELRLLLCEL---LITCTAGRAA-SVVNAYLHEAMLLLAGFCRDTFGELALKAMEGVKTICATEDLQDPLVPYAAALARVSMPNLRHRHARVRRGAVDAVRRAVAVKHVAKWRAAGSDAIADLVGFREDNVIPTASFYGR-EVRYNYVAEL 368
BLAST of mRNA_H-elongata_contig118695.1445.1 vs. uniprot
Match: A0A7S2PXF7_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PXF7_9STRA) HSP 1 Score: 157 bits (398), Expect = 1.780e-40 Identity = 94/235 (40.00%), Postives = 136/235 (57.87%), Query Frame = 1
Query: 34 REAAIRAVTICLGYVADLTPYLAYLFPIIMARGLQPGIFYDPELELFVHDMGEHEAYKRGRATERQDRHLPLVQST---PEDSEELRLSLCRMVGQMVVVLMNRGTIGVIRPYLDEIIIFLVTQSNDLYSAVKVEALAIFANLAVCPHLEQGMKFYAVGLARVFLPHLRHRHAKIRVAAIEALRMTVKVQDHAKVKGAGTAAIVDLVGFREDNVLPVAAFY-GRGDTTVNYLAEV 726
R ++ + L DL +L YL P I+AR YD E+E+FV + H+ +KRG A+ RQDR + Q T E +E+LRL+LC + +V +M G++ PY E+++ L T D + VK+ A A L P E G K++A GLAR LP+ R+R+ + VAA++ L ++ V D AK KGAG+AAI DLVGF+ DN +P+AAFY + +VN LAE+
Sbjct: 182 RRLSLECIQSLLLANIDLARHLPYLIPSIVAR--YTPCAYDKEMEVFVQNQQVHDFFKRGGASNRQDRDGLIGQVTFDVVEPNEDLRLALCHTIKCLVDSIMRMNAAGILEPYYSELVMALQTSLKDPFPEVKIAASHRLAELLRIPQFELGAKYFATGLARALLPNCRNRNTAVVVAAMDLLEASIVVPDRAKRKGAGSAAIADLVGFKADNAIPIAAFYDSQHAVSVNILAEL 414
BLAST of mRNA_H-elongata_contig118695.1445.1 vs. uniprot
Match: A0A8J2S4Y5_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S4Y5_9STRA) HSP 1 Score: 151 bits (382), Expect = 4.130e-38 Identity = 95/235 (40.43%), Postives = 136/235 (57.87%), Query Frame = 1
Query: 34 REAAIRAVTICLGYVADLTPYLAYLFPIIMARGLQPGIFYDPELELFVHDMGEHEAYKRGRATERQDRHLPLVQS----TPEDSEELRLSLCRMVGQMVVVLMNRGTIGVIRPYLDEIIIFLVTQSNDLYSAVKVEALAIFANLAVCPHLEQGMKFYAVGLARVFLPHLRHRHAKIRVAAIEALRMTVKVQDHAKVKGAGTAAIVDLVGFREDNVLPVAAFYGRGDTTVNYLAEV 726
RE AIR + V DL P+L YLFP++ RG P D E +FV D+ ++ +KRG+AT R D ++ + E +EELRL LC + ++VV NR +I YL E ++ + D + V A + + L++ + YA LAR LP+LRHRHAK+R A ++A+R +V V++ K +GAG+ AI DLVGFREDNV+P AFYG +T NY+AE+
Sbjct: 146 REKAIRLMAELCKRVKDLQPHLPYLFPVLHHRG-SPASGLDVENSVFVFDLQGYDEFKRGKATARPDLQEAFARTRLVNSGEPAEELRLQLCEL---LIVVTTNRPA-NIIGAYLHEAMLLFAGFARDTFGLVAKRAAEGISAVCSVDDLQEALIPYACALARCCLPNLRHRHAKVRKATVDAIRRSVAVRNVGKWRGAGSDAIKDLVGFREDNVIPTHAFYGP-ETRYNYVAEL 374
BLAST of mRNA_H-elongata_contig118695.1445.1 vs. uniprot
Match: A0A7S1CDH1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CDH1_9STRA) HSP 1 Score: 142 bits (359), Expect = 4.800e-35 Identity = 78/232 (33.62%), Postives = 131/232 (56.47%), Query Frame = 1
Query: 34 REAAIRAVTICLGYVADLTPYLAYLFPIIMARGLQPGIFYDPELELFVHDMGEHEAYKRGRATERQDRHL-PLVQSTPEDSEELRLSLCRMVGQMVVVLMNRGTIGVIRPYLDEIIIFLVTQSNDLYSAVKVEALAIFANLAVCPHLEQGMKFYAVGLARVFLPHLRHRHAKIRVAAIEALRMTVKVQDHAKVKGAGTAAIVDLVGFREDNVLPVAAFYGRGDTTVNYLAEV 726
RE A+ VT L + D+ L Y+ P+++ R + + YD ++ +FV + HE ++RGR + D + P + SEE+RL+LC V +V G + PY+ ++ + + + D + +K+ + L C + K +AVG+ R LP L HRHAK+R+A ++A+ + +D AK KGAGTAAI D+VG ++N +P+AAFY R + ++NY+A++
Sbjct: 114 RELAVLMVTRFLSVLTDVGACLPYVVPVMIERLVPADLGYDHDMNVFVKSVERHEEFRRGRVLPKGDLYNDPYATKVVDASEEVRLALCNAVIALVETTAANGAHAQLTPYILDVFLAAESAAVDPFPDLKIRGCQLIEML--CSFSAEATKVFAVGMIRAILPGLDHRHAKVRIAILDAIGALITCEDKAKCKGAGTAAIFDMVGHHDENTIPIAAFY-RHEASINYMAKL 342
BLAST of mRNA_H-elongata_contig118695.1445.1 vs. uniprot
Match: A0A2R5GQZ3_9STRA (Dynein assembly factor 5, axonemal n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GQZ3_9STRA) HSP 1 Score: 140 bits (354), Expect = 1.330e-34 Identity = 84/231 (36.36%), Postives = 123/231 (53.25%), Query Frame = 1
Query: 34 REAAIRAVTICLGYVADLTPYLAYLFPIIMARGLQPGIFYDPELELFVHDMGEHEAYKRGRATERQDRHLPLVQSTPEDSEELRLSLCRMVGQMVVVLMNRGTIGVIRPYLDEIIIFLVTQSNDLYSAVKVEALAIFANLAVCPHLEQGMKFYAVGLARVFLPHLRHRHAKIRVAAIEALRMTVKVQDHAKVKGAGTAAIVDLVGFREDNVLPVAAFYGRGDTTVNYLAEV 726
RE + +T + DL P L YL+P +M R IF D + V D+ HEA +RG+A D L + E SEE+RL LC M+ +V RG ++ PY + ++F + D + A+++E + + +A E M Y L R +P LRHR + +++AAI + V K KG GT AIVDL+GFREDNV+P+ AFY +G+T +NYL +
Sbjct: 46 RELSAIMLTKFIARCEDLGPVLPYLYPAVMDRNSDTFIF-DLQNNEMVRDVEAHEAKQRGKAIPLPDGGTTLRHTVREPSEEVRLLLCTMLATLVRSFTRRGLHSMLGPYFHDTVMFFHACAVDPFPALRIEGMRMLQEIAQERAFENTMHHYCTALVRSLMPALRHRRSAVKIAAIRCIGALVACPYRNKCKGGGTDAIVDLMGFREDNVIPICAFY-QGETRLNYLGHL 274 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118695.1445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig118695.1445.1 >prot_H-elongata_contig118695.1445.1 ID=prot_H-elongata_contig118695.1445.1|Name=mRNA_H-elongata_contig118695.1445.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=252bp YKSQCLPSHVHREAAIRAVTICLGYVADLTPYLAYLFPIIMARGLQPGIFback to top mRNA from alignment at H-elongata_contig118695:277..1829- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig118695.1445.1 ID=mRNA_H-elongata_contig118695.1445.1|Name=mRNA_H-elongata_contig118695.1445.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1553bp|location=Sequence derived from alignment at H-elongata_contig118695:277..1829- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig118695:277..1829- >mRNA_H-elongata_contig118695.1445.1 ID=mRNA_H-elongata_contig118695.1445.1|Name=mRNA_H-elongata_contig118695.1445.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1512bp|location=Sequence derived from alignment at H-elongata_contig118695:277..1829- (Himanthalia elongata Himel1 dioecious)back to top |