mRNA_H-elongata_contig118695.1445.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig118695.1445.1
Unique NamemRNA_H-elongata_contig118695.1445.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig118695.1445.1 vs. uniprot
Match: D8LFZ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFZ5_ECTSI)

HSP 1 Score: 338 bits (868), Expect = 1.360e-106
Identity = 169/242 (69.83%), Postives = 200/242 (82.64%), Query Frame = 1
Query:    1 YKSQCLPSHVHREAAIRAVTICLGYVADLTPYLAYLFPIIMARGLQPGIFYDPELELFVHDMGEHEAYKRGRATERQDRHLPLVQSTPEDSEELRLSLCRMVGQMVVVLMNRGTIGVIRPYLDEIIIFLVTQSNDLYSAVKVEALAIFANLAVCPHLEQGMKFYAVGLARVFLPHLRHRHAKIRVAAIEALRMTVKVQDHAKVKGAGTAAIVDLVGFREDNVLPVAAFYGRGDTTVNYLAEV 726
            +K    P+   REA+I+AV + + +V DLTP+LAYLFP++MAR +  G  YDP LELFVHD  EHEAYKRGRATERQD+HLP VQ   E SEELRLSLCRMVG+M+  LM+RGTIGV+RPYLD+ I+ LV+Q  D YSAVKVEAL+I   L + PH+EQGMKFYAVG++R  LPHLRHRHAK+R+AAI+ALR+ V V D AKVKGAGT+AIVDLVGFREDNVLP+AAFYGRGDTTVNYLAE+
Sbjct:   54 FKGLADPAEACREASIKAVALFMEHVPDLTPHLAYLFPVLMARAVPAGSLYDPSLELFVHDNDEHEAYKRGRATERQDQHLPQVQHIAEGSEELRLSLCRMVGRMLGKLMDRGTIGVLRPYLDDTILLLVSQFRDPYSAVKVEALSIVTTLVLHPHVEQGMKFYAVGISRAILPHLRHRHAKVRLAAIKALRLAVMVPDRAKVKGAGTSAIVDLVGFREDNVLPIAAFYGRGDTTVNYLAEL 295          
BLAST of mRNA_H-elongata_contig118695.1445.1 vs. uniprot
Match: A0A836C9Q8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9Q8_9STRA)

HSP 1 Score: 213 bits (543), Expect = 1.160e-59
Identity = 133/311 (42.77%), Postives = 156/311 (50.16%), Query Frame = 1
Query:   19 PSHVHREAAIRAVTICLGYVADLTPYLAYLFPIIMARGLQPGIFYDPELE---------------LFVHDMGEHEAYKRGRATERQDRHLPLVQSTPEDSEELRLSLCRMVGQMVVVLMNRGTIGVIRPYLDEIIIFLVTQSNDLYSAVKVEALAIFANLAVCPHLEQGMKFYAVGLARVFLPHLRHRHAKIRVAAIEAL------------------------------------------------------------RMTVKVQDHAKVKGAGTAAIVDLVGFREDNVLPVAAFYGRGDTTVNYLAEV 726
            P    RE A+R     L   ADLTP+LAYLFP + ARG+ PG  +D E +               +FVHD  EHEAY+RG ATERQDR  PL     E SEELRL LCR+ G +   L  RG   V+RPY D+ ++ L  Q  D Y  +K EA      LA  P  E GM FYA GLAR  LP LRHRHA++R AA  AL                                                            R  V V D A+ KGAGT AIVDLVGFREDNV+PVA+FYGRGDT+VN LA++
Sbjct:  133 PGEGCRELALRLALALLRGAADLTPHLAYLFPALAARGVPPGAAFDAEAKRERGRLLTGGRRRCAVFVHDADEHEAYRRGVATERQDRTDPLRARVVEPSEELRLLLCRLAGGVARALSARGAAAVLRPYFDDAVLLLACQLRDPYPTLKAEACKELEWLACAPAYEAGMAFYATGLARALLPLLRHRHARVRAAAARALWKPAGSVRCDPRRGTTCVRISGAAVPQYDASSVSAREPPRHTSHRARCPLLSLIAARQLPRQVVMVPDRARCKGAGTEAIVDLVGFREDNVIPVASFYGRGDTSVNCLADL 443          
BLAST of mRNA_H-elongata_contig118695.1445.1 vs. uniprot
Match: A0A7S1XY42_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XY42_9STRA)

HSP 1 Score: 184 bits (466), Expect = 2.470e-49
Identity = 108/237 (45.57%), Postives = 139/237 (58.65%), Query Frame = 1
Query:   34 REAAIRAVTICLGYVADLTPYLAYLFPIIMARGLQPGIFYDPELELFVHDMGEHEAYKRGRATERQDRHLPLVQ-----STPEDSEELRLSLCRMVGQMVVVLMNRGTIGVIRPYLDEIIIFLVTQSNDLYSAVKVEALAIFANLAVCPHLEQGMKFYAVGLARVFLPHLRHRHAKIRVAAIEALRMTVKVQDHAKVKGAGTAAIVDLVGFREDNVLPVAAFYG-RGDTTVNYLAEV 726
            RE ++  VT+   +V DLT ++ Y FP  +   L P   YD E ++FVH++  HE +KRGRA  RQDR   L       S  + SEE+R    RM+  ++  LM RG   ++ PYL E I+FL  Q  D    VK+EA      LAV   L  G K YA+ LAR   P LRHRHA++R+AA+EA+   V ++   K KGAGT AI DL+GFR DNVLPV AFY      TVNYLAE+
Sbjct:  195 RELSVNLVTLFFCHVRDLTQHIGYFFP-ALCYYLNPDEAYDAETKVFVHNIDAHEEFKRGRAVIRQDRTHALDAASERVSVRDASEEMRYLYVRMLHTLLYELMERGAERILGPYLHETILFLQAQLRDPCPKVKMEACRALKRLAVSEVLTPGTKLYAIALARAVFPVLRHRHARVRLAAVEAVHAIVMIKQQEKCKGAGTEAIEDLIGFRADNVLPVGAFYNPESGITVNYLAEL 430          
BLAST of mRNA_H-elongata_contig118695.1445.1 vs. uniprot
Match: A0A6U2L7V1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2L7V1_9STRA)

HSP 1 Score: 177 bits (450), Expect = 1.910e-47
Identity = 99/236 (41.95%), Postives = 145/236 (61.44%), Query Frame = 1
Query:   34 REAAIRAVTICLGYVADLTPYLAYLFPIIMARGLQPGIFYDPELELFVHDMGEHEAYKRGRATERQDRHLPL----VQSTPEDSEELRLSLCRMVGQMVVVLMNRGTIGVIRPYLDEIIIFLVTQSNDLYSAVKVEALAIFANLAVCPHLEQGMKFYAVGLARVFLPHLRHRHAKIRVAAIEALRMTVKVQDHAKVKGAGTAAIVDLVGFREDNVLPVAAFY-GRGDTTVNYLAEV 726
            RE ++R  ++     +D   ++ +L   I+AR   P I YD +L++FVHDM  HE YKRG A ERQD+   L         E SEELRL LC+++  +    + RG+I ++ PYL +I++ L + S D +S VK+EA +I   L   P  E   K +++GLAR  +P+LRHR++ +R+A++      V V D  K+KGAG+ AI+DLVGFRE+NVLP+ AFY      +VN LAE+
Sbjct:  261 RELSLRCSSVLARGASDFGKHIPFLMSAILARF--PAIIYDEDLQIFVHDMKRHEEYKRGIAVERQDKENLLSGVECLQVVEKSEELRLLLCKLISSLFRGSIRRGSISMLNPYLIDIVLALHSLSRDPFSLVKIEASSILVQLMRVPQWEMCSKHFSIGLARAAIPNLRHRNSNVRLASVILFEACVCVPDREKMKGAGSEAIIDLVGFREENVLPIGAFYKSSAGVSVNTLAEL 494          
BLAST of mRNA_H-elongata_contig118695.1445.1 vs. uniprot
Match: B8C2S9_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C2S9_THAPS)

HSP 1 Score: 163 bits (413), Expect = 2.030e-42
Identity = 99/220 (45.00%), Postives = 132/220 (60.00%), Query Frame = 1
Query:   82 DLTPYLAYLFPIIMARGLQPGIFYDPELELFVHDMGEHEAYKRGRATERQDRHLPLVQSTP----EDSEELRLSLCRMVGQMVVVLMNRGTIGVIRPYLDEIIIFLVTQSNDLYSAVKVEALAIFANLAVCPHLEQGMKFYAVGLARVFLPHLRHRHAKIRVAAIEALRMTVKVQDHAKVKGAGTAAIVDLVGFREDNVLPVAAFYG-RGDTTVNYLAEV 726
            D+  ++ YL P + AR   P   YD +LE+FV D   HE YKRG A +RQDR   L  +      E SEELRL LCR    ++  L+ R  + ++  Y  E+I  L     D +  VKVEA  I   L    + E G KF+A G+AR  LP+ RHR+ K+ ++A++ L  +V V D AKVKGAGT+AI DLVGFRE+NVLP+AAFY  +   +VN LAE+
Sbjct:  245 DIGRHVPYLIPALAARF--PSCSYDKDLEVFVQDSQSHELYKRGGAIDRQDRDGLLAPNCSFPVIEPSEELRLELCRTFSCLLRGLLVRDAVMILDAYFPEMIYSLQASLKDPFPNVKVEACRILVQLLRVSNWELGAKFFATGIARSVLPNCRHRNTKVVISAMDLLEASVCVPDRAKVKGAGTSAISDLVGFREENVLPIAAFYDPKYSVSVNTLAEL 462          
BLAST of mRNA_H-elongata_contig118695.1445.1 vs. uniprot
Match: F0YIE1_AURAN (Expressed protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIE1_AURAN)

HSP 1 Score: 162 bits (411), Expect = 5.480e-42
Identity = 96/240 (40.00%), Postives = 138/240 (57.50%), Query Frame = 1
Query:   19 PSHVHREAAIRAVTICLGYVADLTPYLAYLFPIIMARGLQPGIFYDPELELFVHDMGEHEAYKRGRATERQDRHLPLVQS----TPEDSEELRLSLCRMVGQMVVVLMNRGTIGVIRPYLDEIIIFLVTQSNDLYSAVKVEALAIFANLAVCPHLEQGMKFYAVGLARVFLPHLRHRHAKIRVAAIEALRMTVKVQDHAKVKGAGTAAIVDLVGFREDNVLPVAAFYGRGDTTVNYLAEV 726
            P   HRE AIR +    G V DLTP++ Y+FP++  RG  P +  D E  +FV D+ +H A+KRG+A  R D      +     T E SEELRL LC +   ++     R    V+  YL E ++ L     D +  + ++A+     +     L+  +  YA  LARV +P+LRHRHA++R  A++A+R  V V+  AK + AG+ AI DLVGFREDNV+P A+FYGR +   NY+AE+
Sbjct:  135 PVEKHRERAIRVLNGLCGRVRDLTPHMPYVFPMLHGRG-SPAVGLDVEAGIFVFDLEDHAAFKRGKAQARPDLACAFERERTLRTREPSEELRLLLCEL---LITCTAGRAA-SVVNAYLHEAMLLLAGFCRDTFGELALKAMEGVKTICATEDLQDPLVPYAAALARVSMPNLRHRHARVRRGAVDAVRRAVAVKHVAKWRAAGSDAIADLVGFREDNVIPTASFYGR-EVRYNYVAEL 368          
BLAST of mRNA_H-elongata_contig118695.1445.1 vs. uniprot
Match: A0A7S2PXF7_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PXF7_9STRA)

HSP 1 Score: 157 bits (398), Expect = 1.780e-40
Identity = 94/235 (40.00%), Postives = 136/235 (57.87%), Query Frame = 1
Query:   34 REAAIRAVTICLGYVADLTPYLAYLFPIIMARGLQPGIFYDPELELFVHDMGEHEAYKRGRATERQDRHLPLVQST---PEDSEELRLSLCRMVGQMVVVLMNRGTIGVIRPYLDEIIIFLVTQSNDLYSAVKVEALAIFANLAVCPHLEQGMKFYAVGLARVFLPHLRHRHAKIRVAAIEALRMTVKVQDHAKVKGAGTAAIVDLVGFREDNVLPVAAFY-GRGDTTVNYLAEV 726
            R  ++  +   L    DL  +L YL P I+AR       YD E+E+FV +   H+ +KRG A+ RQDR   + Q T    E +E+LRL+LC  +  +V  +M     G++ PY  E+++ L T   D +  VK+ A    A L   P  E G K++A GLAR  LP+ R+R+  + VAA++ L  ++ V D AK KGAG+AAI DLVGF+ DN +P+AAFY  +   +VN LAE+
Sbjct:  182 RRLSLECIQSLLLANIDLARHLPYLIPSIVAR--YTPCAYDKEMEVFVQNQQVHDFFKRGGASNRQDRDGLIGQVTFDVVEPNEDLRLALCHTIKCLVDSIMRMNAAGILEPYYSELVMALQTSLKDPFPEVKIAASHRLAELLRIPQFELGAKYFATGLARALLPNCRNRNTAVVVAAMDLLEASIVVPDRAKRKGAGSAAIADLVGFKADNAIPIAAFYDSQHAVSVNILAEL 414          
BLAST of mRNA_H-elongata_contig118695.1445.1 vs. uniprot
Match: A0A8J2S4Y5_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S4Y5_9STRA)

HSP 1 Score: 151 bits (382), Expect = 4.130e-38
Identity = 95/235 (40.43%), Postives = 136/235 (57.87%), Query Frame = 1
Query:   34 REAAIRAVTICLGYVADLTPYLAYLFPIIMARGLQPGIFYDPELELFVHDMGEHEAYKRGRATERQDRHLPLVQS----TPEDSEELRLSLCRMVGQMVVVLMNRGTIGVIRPYLDEIIIFLVTQSNDLYSAVKVEALAIFANLAVCPHLEQGMKFYAVGLARVFLPHLRHRHAKIRVAAIEALRMTVKVQDHAKVKGAGTAAIVDLVGFREDNVLPVAAFYGRGDTTVNYLAEV 726
            RE AIR +      V DL P+L YLFP++  RG  P    D E  +FV D+  ++ +KRG+AT R D      ++    + E +EELRL LC +   ++VV  NR    +I  YL E ++     + D +  V   A    + +     L++ +  YA  LAR  LP+LRHRHAK+R A ++A+R +V V++  K +GAG+ AI DLVGFREDNV+P  AFYG  +T  NY+AE+
Sbjct:  146 REKAIRLMAELCKRVKDLQPHLPYLFPVLHHRG-SPASGLDVENSVFVFDLQGYDEFKRGKATARPDLQEAFARTRLVNSGEPAEELRLQLCEL---LIVVTTNRPA-NIIGAYLHEAMLLFAGFARDTFGLVAKRAAEGISAVCSVDDLQEALIPYACALARCCLPNLRHRHAKVRKATVDAIRRSVAVRNVGKWRGAGSDAIKDLVGFREDNVIPTHAFYGP-ETRYNYVAEL 374          
BLAST of mRNA_H-elongata_contig118695.1445.1 vs. uniprot
Match: A0A7S1CDH1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CDH1_9STRA)

HSP 1 Score: 142 bits (359), Expect = 4.800e-35
Identity = 78/232 (33.62%), Postives = 131/232 (56.47%), Query Frame = 1
Query:   34 REAAIRAVTICLGYVADLTPYLAYLFPIIMARGLQPGIFYDPELELFVHDMGEHEAYKRGRATERQDRHL-PLVQSTPEDSEELRLSLCRMVGQMVVVLMNRGTIGVIRPYLDEIIIFLVTQSNDLYSAVKVEALAIFANLAVCPHLEQGMKFYAVGLARVFLPHLRHRHAKIRVAAIEALRMTVKVQDHAKVKGAGTAAIVDLVGFREDNVLPVAAFYGRGDTTVNYLAEV 726
            RE A+  VT  L  + D+   L Y+ P+++ R +   + YD ++ +FV  +  HE ++RGR   + D +  P      + SEE+RL+LC  V  +V      G    + PY+ ++ +   + + D +  +K+    +   L  C    +  K +AVG+ R  LP L HRHAK+R+A ++A+   +  +D AK KGAGTAAI D+VG  ++N +P+AAFY R + ++NY+A++
Sbjct:  114 RELAVLMVTRFLSVLTDVGACLPYVVPVMIERLVPADLGYDHDMNVFVKSVERHEEFRRGRVLPKGDLYNDPYATKVVDASEEVRLALCNAVIALVETTAANGAHAQLTPYILDVFLAAESAAVDPFPDLKIRGCQLIEML--CSFSAEATKVFAVGMIRAILPGLDHRHAKVRIAILDAIGALITCEDKAKCKGAGTAAIFDMVGHHDENTIPIAAFY-RHEASINYMAKL 342          
BLAST of mRNA_H-elongata_contig118695.1445.1 vs. uniprot
Match: A0A2R5GQZ3_9STRA (Dynein assembly factor 5, axonemal n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GQZ3_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.330e-34
Identity = 84/231 (36.36%), Postives = 123/231 (53.25%), Query Frame = 1
Query:   34 REAAIRAVTICLGYVADLTPYLAYLFPIIMARGLQPGIFYDPELELFVHDMGEHEAYKRGRATERQDRHLPLVQSTPEDSEELRLSLCRMVGQMVVVLMNRGTIGVIRPYLDEIIIFLVTQSNDLYSAVKVEALAIFANLAVCPHLEQGMKFYAVGLARVFLPHLRHRHAKIRVAAIEALRMTVKVQDHAKVKGAGTAAIVDLVGFREDNVLPVAAFYGRGDTTVNYLAEV 726
            RE +   +T  +    DL P L YL+P +M R     IF D +    V D+  HEA +RG+A    D    L  +  E SEE+RL LC M+  +V     RG   ++ PY  + ++F    + D + A+++E + +   +A     E  M  Y   L R  +P LRHR + +++AAI  +   V      K KG GT AIVDL+GFREDNV+P+ AFY +G+T +NYL  +
Sbjct:   46 RELSAIMLTKFIARCEDLGPVLPYLYPAVMDRNSDTFIF-DLQNNEMVRDVEAHEAKQRGKAIPLPDGGTTLRHTVREPSEEVRLLLCTMLATLVRSFTRRGLHSMLGPYFHDTVMFFHACAVDPFPALRIEGMRMLQEIAQERAFENTMHHYCTALVRSLMPALRHRRSAVKIAAIRCIGALVACPYRNKCKGGGTDAIVDLMGFREDNVIPICAFY-QGETRLNYLGHL 274          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118695.1445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFZ5_ECTSI1.360e-10669.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C9Q8_9STRA1.160e-5942.77Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1XY42_9STRA2.470e-4945.57Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6U2L7V1_9STRA1.910e-4741.95Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
B8C2S9_THAPS2.030e-4245.00Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
F0YIE1_AURAN5.480e-4240.00Expressed protein n=1 Tax=Aureococcus anophageffer... [more]
A0A7S2PXF7_9STRA1.780e-4040.00Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A8J2S4Y5_9STRA4.130e-3840.43Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S1CDH1_9STRA4.800e-3533.62Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A2R5GQZ3_9STRA1.330e-3436.36Dynein assembly factor 5, axonemal n=1 Tax=Hondaea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118695contigH-elongata_contig118695:277..1829 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score338.6
Seed ortholog evalue2.5e-90
Seed eggNOG ortholog2880.D8LFZ5
Preferred nameHEATR2
KEGG koko:K19759
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003008,GO:0003341,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007600,GO:0007605,GO:0007610,GO:0007626,GO:0008150,GO:0008344,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030317,GO:0030534,GO:0032501,GO:0034622,GO:0035082,GO:0036158,GO:0036159,GO:0040011,GO:0043933,GO:0044085,GO:0044424,GO:0044464,GO:0044782,GO:0045505,GO:0048870,GO:0050877,GO:0050954,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0060294,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0097722,GO:0120031,GO:0120036
EggNOG free text desc.inner dynein arm assembly
EggNOG OGs2CMTW@1,2QRXT@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArmadillo domain protein
Ec32 orthologEc-21_005170.1
Exons4
Model size756
Cds size756
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118695.1445.1prot_H-elongata_contig118695.1445.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig118695 277..1829 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929694.131354-CDS-H-elongata_contig118695:276..4961622929694.131354-CDS-H-elongata_contig118695:276..496Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118695 277..496 -
1691679121.6264539-CDS-H-elongata_contig118695:276..4961691679121.6264539-CDS-H-elongata_contig118695:276..496Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118695 277..496 -
1622929694.1481903-CDS-H-elongata_contig118695:778..8371622929694.1481903-CDS-H-elongata_contig118695:778..837Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118695 779..837 -
1691679121.638885-CDS-H-elongata_contig118695:778..8371691679121.638885-CDS-H-elongata_contig118695:778..837Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118695 779..837 -
1622929694.1621003-CDS-H-elongata_contig118695:951..12191622929694.1621003-CDS-H-elongata_contig118695:951..1219Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118695 952..1219 -
1691679121.64844-CDS-H-elongata_contig118695:951..12191691679121.64844-CDS-H-elongata_contig118695:951..1219Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118695 952..1219 -
1622929694.1777399-CDS-H-elongata_contig118695:1620..18291622929694.1777399-CDS-H-elongata_contig118695:1620..1829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118695 1621..1829 -
1691679121.6573572-CDS-H-elongata_contig118695:1620..18291691679121.6573572-CDS-H-elongata_contig118695:1620..1829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118695 1621..1829 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig118695.1445.1

>prot_H-elongata_contig118695.1445.1 ID=prot_H-elongata_contig118695.1445.1|Name=mRNA_H-elongata_contig118695.1445.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=252bp
YKSQCLPSHVHREAAIRAVTICLGYVADLTPYLAYLFPIIMARGLQPGIF
YDPELELFVHDMGEHEAYKRGRATERQDRHLPLVQSTPEDSEELRLSLCR
MVGQMVVVLMNRGTIGVIRPYLDEIIIFLVTQSNDLYSAVKVEALAIFAN
LAVCPHLEQGMKFYAVGLARVFLPHLRHRHAKIRVAAIEALRMTVKVQDH
AKVKGAGTAAIVDLVGFREDNVLPVAAFYGRGDTTVNYLAEVGIRCPIPT
L*
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mRNA from alignment at H-elongata_contig118695:277..1829-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig118695.1445.1 ID=mRNA_H-elongata_contig118695.1445.1|Name=mRNA_H-elongata_contig118695.1445.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1553bp|location=Sequence derived from alignment at H-elongata_contig118695:277..1829- (Himanthalia elongata Himel1 dioecious)
TATAAGTCCCAGTGTTTACCCTCGCATGTGCACAGGGAAGCAGCAATCCG CGCTGTCACGATTTGTCTGGGATATGTTGCGGACTTGACTCCCTACCTAG CATACTTATTTCCCATCATTATGGCTCGTGGCCTTCAACCTGGAATTTTT TACGACCCGGAACTAGAACTTTTCGTTCATGATATGGGCGAGCATGAGGC ATACAAACGGTAAGAGAGGACACGTGCAGATGCCGAATTTTTGCGGAATG ACATTGCAGCCCAGCATCGACATCGGAGAATCATCATGGGGGAATCAAGA AATATCCTCGATATACAGGGTTGAGTTCACGTGGTTGGAATTATGCTTTG TGTTAGGATTATTGTCAAGAGTATAATAATCAGCGTAGATAGACTCGCTT GAAAAAGGCAAATACATCCAAGAGAGGCACACAAGTCCGTGCGCTCTGTG GCGTTACATGACGCTTGTACAAAGTCTTGCATCAGACTGCGTTCACCTCG TGCTCGGAAACGCTGTGTTGGAAGAACTCACTTCTCAGGGTGACTGTCTC CTATCCCGCGTAATTAGTGTCAACTCACGAGGGTGGACTTTTGCTTTCAT GCTCTGACAGTGGGCGAGCAACTGAACGCCAAGACAGGCATCTTCCGCTG GTACAGAGTACTCCGGAGGATAGTGAAGAGCTTCGCCTATCTTTATGTCG AATGGTTGGCCAGATGGTCGTGGTGCTCATGAATAGGGGTACTATCGGCG TGATAAGGCCTTACTTGGATGAGATAATAATTTTCCTGGTGACTCAGTCC AACGATCTGTATTCCGCTGTAAAGGTGGAGGCTCTGGCGATCTTCGCAAA CCTGGCTGTGTGCCCTCACCTTGAGCAGGTACGATGACATGCCCTTCGAA CACCAACGCGATCTTCCAAACACAAAATGATGTTTCATAGCGTGATAATG CACAGAACGCTCGTAAAGATCGATTGTCTGTCGAACTCGCAGGGTATGAA ATTCTACGCTGTTGGCCTTGCACGGGTGTTCCTGCCCCACCTCAGACACA GGTTGGTGTTTTTGGAGACGTCTCCGAGATATTATAAATTATGTATGTAT TTTCTGACGAGACTGGCGGCTATGCACTGGAATTTCCGCGTAGCGAGGGA AATATTGCTATTGGTCGATCCTTCCCTAAGCGATAGGCCATCTTTCAGAT ATGAGCCCGCAGAATCAAGCGAGCATATTTTATATAAATGATAATTAGTA GTATCAGTGGTGTGAGTACGCGTGTAGCGCAATTCTGAATTTTGTGCATG GACCCAGACAATATTTCTGCCTACCGATTCAAGGCACGCCAAGATACGAG TCGCTGCCATTGAGGCGTTGCGGATGACAGTGAAGGTGCAAGATCATGCA AAGGTCAAAGGGGCTGGAACGGCAGCTATCGTGGACCTTGTTGGCTTTCG TGAGGATAACGTTCTTCCTGTTGCAGCGTTCTACGGAAGGGGAGATACGA CCGTTAATTATCTTGCTGAGGTAGGTATTAGATGCCCTATTCCTACGCTA TGA
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Coding sequence (CDS) from alignment at H-elongata_contig118695:277..1829-

>mRNA_H-elongata_contig118695.1445.1 ID=mRNA_H-elongata_contig118695.1445.1|Name=mRNA_H-elongata_contig118695.1445.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1512bp|location=Sequence derived from alignment at H-elongata_contig118695:277..1829- (Himanthalia elongata Himel1 dioecious)
TATAAGTCCCAGTGTTTACCCTCGCATGTGCACAGGGAAGCAGCAATCCG
CGCTGTCACGATTTGTCTGGGATATGTTGCGGACTTGACTCCCTACCTAG
CATACTTATTTCCCATCATTATGGCTCGTGGCCTTCAACCTGGAATTTTT
TACGACCCGGAACTAGAACTTTTCGTTCATGATATGGGCGAGCATGAGGC
ATACAAACGTATAAGTCCCAGTGTTTACCCTCGCATGTGCACAGGGAAGC
AGCAATCCGCGCTGTCACGATTTGTCTGGGATATGTTGCGGACTTGACTC
CCTACCTAGCATACTTATTTCCCATCATTATGGCTCGTGGCCTTCAACCT
GGAATTTTTTACGACCCGGAACTAGAACTTTTCGTTCATGATATGGGCGA
GCATGAGGCATACAAACGTGGGCGAGCAACTGAACGCCAAGACAGGCATC
TTCCGCTGGTACAGAGTACTCCGGAGGATAGTGAAGAGCTTCGCCTATCT
TTATGTCGAATGGTTGGCCAGATGGTCGTGGTGCTCATGAATAGGGGTAC
TATCGGCGTGATAAGGCCTTACTTGGATGAGATAATAATTTTCCTGGTGA
CTCAGTCCAACGATCTGTATTCCGCTGTAAAGGTGGAGGCTCTGGCGATC
TTCGCAAACCTGGCTGTGTGCCCTCACCTTGAGCAGTGGGCGAGCAACTG
AACGCCAAGACAGGCATCTTCCGCTGGTACAGAGTACTCCGGAGGATAGT
GAAGAGCTTCGCCTATCTTTATGTCGAATGGTTGGCCAGATGGTCGTGGT
GCTCATGAATAGGGGTACTATCGGCGTGATAAGGCCTTACTTGGATGAGA
TAATAATTTTCCTGGTGACTCAGTCCAACGATCTGTATTCCGCTGTAAAG
GTGGAGGCTCTGGCGATCTTCGCAAACCTGGCTGTGTGCCCTCACCTTGA
GCAGGGTATGAAATTCTACGCTGTTGGCCTTGCACGGGTGTTCCTGCCCC
ACCTCAGACACAGGGTATGAAATTCTACGCTGTTGGCCTTGCACGGGTGT
TCCTGCCCCACCTCAGACACAGGCACGCCAAGATACGAGTCGCTGCCATT
GAGGCGTTGCGGATGACAGTGAAGGTGCAAGATCATGCAAAGGTCAAAGG
GGCTGGAACGGCAGCTATCGTGGACCTTGTTGGCTTTCGTGAGGATAACG
TTCTTCCTGTTGCAGCGTTCTACGGAAGGGGAGATACGACCGTTAATTAT
CTTGCTGAGGTAGGTATTAGATGCCCTATTCCTACGCTATGAGCACGCCA
AGATACGAGTCGCTGCCATTGAGGCGTTGCGGATGACAGTGAAGGTGCAA
GATCATGCAAAGGTCAAAGGGGCTGGAACGGCAGCTATCGTGGACCTTGT
TGGCTTTCGTGAGGATAACGTTCTTCCTGTTGCAGCGTTCTACGGAAGGG
GAGATACGACCGTTAATTATCTTGCTGAGGTAGGTATTAGATGCCCTATT
CCTACGCTATGA
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