mRNA_H-elongata_contig118647.1442.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig118647.1442.1
Unique NamemRNA_H-elongata_contig118647.1442.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig118647.1442.1 vs. uniprot
Match: A0A6H5L087_9PHAE (Calreticulin n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L087_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 2.220e-31
Identity = 89/109 (81.65%), Postives = 96/109 (88.07%), Query Frame = 1 
Query:   25 EDEDGEWEPTMIKNPEYKGXXXXXXXXXXXXXXXXXXXXXXXXXFKIDDKLAQRCTGCTHIGFELWQVKAGTLFDEIIVTDSLEEAQAFAEETWAVKKDKEKEVHEEIK 351
            E+EDGEWEP MIKNPE+K XXXXXXXXXXXXXXXXXXXXXXXXX   D  L +RCT CTH+GFELWQV AGT+FDEI+VTDSLEEAQ FAEETWA KKDKEKE HEE+K
Sbjct:  267 EEEDGEWEPAMIKNPEFKXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDKTLGKRCTECTHVGFELWQVTAGTIFDEILVTDSLEEAQKFAEETWATKKDKEKEAHEELK 375
[Close]
BLAST of mRNA_H-elongata_contig118647.1442.1 vs. uniprot
Match: A0A7S2S2C9_9STRA (Calreticulin n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2C9_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.580e-25
Identity = 84/119 (70.59%), Postives = 102/119 (85.71%), Query Frame = 1 
Query:   28 DEDGEWEPTMIKNPEYKGXXXXXXXXXXXXXXXXXXXXXXXXXFKIDDKLAQRCT-GCTHIGFELWQVKAGTLFDEIIVTDSLEEAQAFAEETWAVKKDKEKEVHEEIKAKEKEEEQVA 381
            ++DGEWEP MI NPEYK XXXXXXXXXXXXXXXXXXXXXXXXX + D+++   C  GCTH+GFELWQVK+GT+FD+II+TDSLEEAQ FAEET+  KKD EKE+ +EI+ K++EEE+ A
Sbjct:  278 EDDGEWEPPMIDNPEYKXXXXXXXXXXXXXXXXXXXXXXXXXXXEYDEEMYAVCKDGCTHVGFELWQVKSGTIFDDIIITDSLEEAQKFAEETFFKKKDAEKEMFDEIQKKQREEEEAA 396
[Close]
BLAST of mRNA_H-elongata_contig118647.1442.1 vs. uniprot
Match: A0A6V1P0W5_HETAK (Calreticulin n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P0W5_HETAK)

HSP 1 Score: 107 bits (268), Expect = 3.340e-25
Identity = 82/108 (75.93%), Postives = 93/108 (86.11%), Query Frame = 1 
Query:   22 DEDEDGEWEPTMIKNPEYKGXXXXXXXXXXXXXXXXXXXXXXXXXFKIDDKLAQRCTGCTHIGFELWQVKAGTLFDEIIVTDSLEEAQAFAEETWAVKKDKEKEVHEE 345
            DE+EDGEWEP MI NPEY  XXXXXXXXXXXXXXXXXXXXXXXXX   DDKL  RC GCTH+GFELWQVKAGT+FD+++VTDSLEEA+AFA++T+  KKD EK + EE
Sbjct:  256 DEEEDGEWEPPMIDNPEYXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEDDKLHHRCKGCTHVGFELWQVKAGTIFDDLLVTDSLEEARAFAKKTFWAKKDAEKAMFEE 363
[Close]
BLAST of mRNA_H-elongata_contig118647.1442.1 vs. uniprot
Match: B8C4G1_THAPS (Calreticulin-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4G1_THAPS)

HSP 1 Score: 104 bits (260), Expect = 3.940e-24
Identity = 83/117 (70.94%), Postives = 98/117 (83.76%), Query Frame = 1 
Query:   22 DEDEDGEWEPTMIKNPEYKGXXXXXXXXXXXXXXXXXXXXXXXXXFKIDDKLAQRCT-GCTHIGFELWQVKAGTLFDEIIVTDSLEEAQAFAEETWAVKKDKEKEVHEEIKAKEKEE 369
            D+++DGEWEP M+ NPEYK XXXXXXXXXXXXXXXXXXXXXXXXX + D+ +   C  GCTH+GFELWQVKAGTLFD+IIVTDSLEEAQ FAEET+  KKD EKE+ +  + K++EE
Sbjct:  260 DDEDDGEWEPPMVDNPEYKXXXXXXXXXXXXXXXXXXXXXXXXXXXEYDENMYAVCKDGCTHVGFELWQVKAGTLFDDIIVTDSLEEAQKFAEETFFKKKDAEKEMFDAAQKKDREE 376
[Close]
BLAST of mRNA_H-elongata_contig118647.1442.1 vs. uniprot
Match: A0A835ZEE0_9STRA (Calreticulin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEE0_9STRA)

HSP 1 Score: 103 bits (256), Expect = 2.040e-23
Identity = 83/116 (71.55%), Postives = 93/116 (80.17%), Query Frame = 1 
Query:   22 DEDEDGEWEPTMIKNPEYKGXXXXXXXXXXXXXXXXXXXXXXXXXFKIDDKLAQRCTGCTHIGFELWQVKAGTLFDEIIVTDSLEEAQAFAEETWAVKKDKEKEVHEEIKAKEKEE 369
            D+ EDGEWEP  I NP+Y+GXXXXXXXXXXXXXXXXXXXXXXXXX   D  L +RC GCTH+GFELWQV +GT+FD+IIVTDSL EA A AEE WA  KDKEK + EE+  KEK E
Sbjct:  262 DDAEDGEWEPAQIPNPDYQGXXXXXXXXXXXXXXXXXXXXXXXXXXXEDPLLYRRCDGCTHVGFELWQVTSGTIFDDIIVTDSLPEAFALAEEGWARWKDKEKAMWEEVSKKEKPE 377
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BLAST of mRNA_H-elongata_contig118647.1442.1 vs. uniprot
Match: A0A7S2BRV9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BRV9_9STRA)

HSP 1 Score: 102 bits (253), Expect = 6.630e-23
Identity = 86/120 (71.67%), Postives = 96/120 (80.00%), Query Frame = 1 
Query:   22 DEDEDGEWEPTMIKNPEYKGXXXXXXXXXXXXXXXXXXXXXXXXXFKIDDKLAQRCTGCTHIGFELWQVKAGTLFDEIIVTDSLEEAQAFAEETWAVKKDKEKE----VHEEIKAKEKEE 369
            DE++DGEWEP MI NP+YK XXXXXXXXXXXXXXXXXXXXXXXXX K D  L QRC  C  IGFELWQVK+GT+FD+IIVTDSL+EA+AFA+ET+  KKD E E    V EE KA EK E
Sbjct:  267 DEEDDGEWEPPMISNPDYKXXXXXXXXXXXXXXXXXXXXXXXXXXXKDDKNLFQRCKDCAMIGFELWQVKSGTMFDDIIVTDSLDEAKAFAKETFFAKKDAESEMFDNVEEERKAAEKAE 386
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BLAST of mRNA_H-elongata_contig118647.1442.1 vs. uniprot
Match: A0A7S0QAX2_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QAX2_9EUKA)

HSP 1 Score: 98.2 bits (243), Expect = 8.920e-23
Identity = 78/107 (72.90%), Postives = 86/107 (80.37%), Query Frame = 1 
Query:   25 EDEDGEWEPTMIKNPEYKGXXXXXXXXXXXXXXXXXXXXXXXXXFKIDDKLAQRCTGCTHIGFELWQVKAGTLFDEIIVTDSLEEAQAFAEETWAVKKDKEKEVHEE 345
            ++EDGEWE  M+ NPEYK XXXXXXXXXXXXXXXXXXXXXXXXX   D +L  RC  CTH+GFELWQVK GT+FD+IIVTDSL EAQA+A ETWA K   EKE  EE
Sbjct:   84 DEEDGEWEAPMVPNPEYKXXXXXXXXXXXXXXXXXXXXXXXXXXXAEDSELHVRCKDCTHVGFELWQVKTGTIFDDIIVTDSLAEAQAYAAETWAKKVGPEKEAFEE 190
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BLAST of mRNA_H-elongata_contig118647.1442.1 vs. uniprot
Match: A0A7S1Y210_9STRA (Calreticulin n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y210_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 6.560e-22
Identity = 80/118 (67.80%), Postives = 98/118 (83.05%), Query Frame = 1 
Query:   28 DEDGEWEPTMIKNPEYKGXXXXXXXXXXXXXXXXXXXXXXXXXFKIDDKLAQRCT-GCTHIGFELWQVKAGTLFDEIIVTDSLEEAQAFAEETWAVKKDKEKEVHEEIKAKEKEEEQV 378
            ++DGEWE  MI NP+YK XXXXXXXXXXXXXXXXXXXXXXXXX K DD + + C  GCTH+GFELWQV  GTLFD+I+VTDSLEEAQ FAEET+  KKD EKE++++I+A+++  E+ 
Sbjct:  292 EDDGEWEAPMIDNPDYKXXXXXXXXXXXXXXXXXXXXXXXXXXXKYDDNMYKVCKDGCTHVGFELWQVTTGTLFDDILVTDSLEEAQKFAEETFFKKKDGEKEMYDKIQAEKRASEEA 409
[Close]
BLAST of mRNA_H-elongata_contig118647.1442.1 vs. uniprot
Match: A0A7R9Y995_9STRA (Calreticulin n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y995_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 9.260e-22
Identity = 77/106 (72.64%), Postives = 89/106 (83.96%), Query Frame = 1 
Query:   28 DEDGEWEPTMIKNPEYKGXXXXXXXXXXXXXXXXXXXXXXXXXFKIDDKLAQRCTGCTHIGFELWQVKAGTLFDEIIVTDSLEEAQAFAEETWAVKKDKEKEVHEE 345
            +EDGEWEP M+ NPEY  XXXXXXXXXXXXXXXXXXXXXXXXXF  D  L  RC  CTH+GFELWQVKAGT+FD+IIVTDSL+EA AFA+ET+  KKD EK++ ++
Sbjct:  291 EEDGEWEPPMVDNPEYXXXXXXXXXXXXXXXXXXXXXXXXXXXFLDDPALYHRCAPCTHVGFELWQVKAGTIFDDIIVTDSLDEAWAFADETFFAKKDGEKKMFDD 396
[Close]
BLAST of mRNA_H-elongata_contig118647.1442.1 vs. uniprot
Match: A0A7S1BUM5_9STRA (Calreticulin n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BUM5_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 9.680e-22
Identity = 76/100 (76.00%), Postives = 86/100 (86.00%), Query Frame = 1 
Query:   28 DEDGEWEPTMIKNPEYKGXXXXXXXXXXXXXXXXXXXXXXXXXFKIDDKLAQRCTGCTHIGFELWQVKAGTLFDEIIVTDSLEEAQAFAEETWAVKKDKE 327
            ++DGEWEP MI NP+Y  XXXXXXXXXXXXXXXXXXXXXXXXX+  DD+L  RC  CTHIGFE+WQV AGTLFD+II+TDS+EEAQAFAEET+  KKD E
Sbjct:  260 EDDGEWEPPMIPNPDYNXXXXXXXXXXXXXXXXXXXXXXXXXXYIKDDELYNRCVDCTHIGFEIWQVTAGTLFDDIILTDSIEEAQAFAEETFYKKKDPE 359
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118647.1442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L087_9PHAE2.220e-3181.65Calreticulin n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
A0A7S2S2C9_9STRA1.580e-2570.59Calreticulin n=1 Tax=Rhizochromulina marina TaxID=... [more]
A0A6V1P0W5_HETAK3.340e-2575.93Calreticulin n=1 Tax=Heterosigma akashiwo TaxID=28... [more]
B8C4G1_THAPS3.940e-2470.94Calreticulin-like protein (Fragment) n=1 Tax=Thala... [more]
A0A835ZEE0_9STRA2.040e-2371.55Calreticulin n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A7S2BRV9_9STRA6.630e-2371.67Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S0QAX2_9EUKA8.920e-2372.90Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S1Y210_9STRA6.560e-2267.80Calreticulin n=2 Tax=Grammatophora oceanica TaxID=... [more]
A0A7R9Y995_9STRA9.260e-2272.64Calreticulin n=1 Tax=Pinguiococcus pyrenoidosus Ta... [more]
A0A7S1BUM5_9STRA9.680e-2276.00Calreticulin n=3 Tax=Corethron hystrix TaxID=21677... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118647contigH-elongata_contig118647:259..1064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.8
Seed ortholog evalue9.5e-28
Seed eggNOG ortholog2880.D7FZD0
Preferred nameCALR
KEGG koko:K08057,ko:K10098
KEGG Pathwayko04141,ko04145,ko04612,ko05142,ko05166,map04141,map04145,map04612,map05142,map05166
GOsGO:0000003,GO:0000122,GO:0001669,GO:0001846,GO:0001848,GO:0001849,GO:0002376,GO:0002396,GO:0002397,GO:0002474,GO:0002478,GO:0002479,GO:0002501,GO:0002502,GO:0002682,GO:0002684,GO:0002685,GO:0002687,GO:0002688,GO:0002690,GO:0003008,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0005102,GO:0005178,GO:0005488,GO:0005506,GO:0005509,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005783,GO:0005788,GO:0005789,GO:0005790,GO:0005793,GO:0005794,GO:0005829,GO:0005844,GO:0005886,GO:0006355,GO:0006357,GO:0006417,GO:0006457,GO:0006611,GO:0006807,GO:0006810,GO:0006873,GO:0006874,GO:0006875,GO:0006886,GO:0006897,GO:0006898,GO:0006906,GO:0006909,GO:0006911,GO:0006913,GO:0006950,GO:0006984,GO:0006986,GO:0006996,GO:0007010,GO:0007044,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007283,GO:0007399,GO:0007417,GO:0007422,GO:0007507,GO:0007568,GO:0007569,GO:0007588,GO:0007610,GO:0007635,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0008219,GO:0008270,GO:0008284,GO:0009266,GO:0009408,GO:0009605,GO:0009607,GO:0009628,GO:0009636,GO:0009719,GO:0009725,GO:0009755,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009897,GO:0009966,GO:0009967,GO:0009968,GO:0009986,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010226,GO:0010324,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010594,GO:0010595,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010632,GO:0010634,GO:0010646,GO:0010647,GO:0010648,GO:0010720,GO:0010721,GO:0010769,GO:0010770,GO:0010810,GO:0010811,GO:0010941,GO:0010948,GO:0012501,GO:0012505,GO:0012506,GO:0014070,GO:0014706,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016528,GO:0016529,GO:0017148,GO:0019219,GO:0019222,GO:0019538,GO:0019725,GO:0019882,GO:0019884,GO:0019899,GO:0019953,GO:0022008,GO:0022414,GO:0022417,GO:0022603,GO:0022604,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030003,GO:0030029,GO:0030036,GO:0030100,GO:0030139,GO:0030141,GO:0030154,GO:0030155,GO:0030176,GO:0030246,GO:0030334,GO:0030335,GO:0030336,GO:0030421,GO:0030431,GO:0030496,GO:0030518,GO:0030522,GO:0030659,GO:0030666,GO:0030670,GO:0030865,GO:0030866,GO:0030968,GO:0031012,GO:0031090,GO:0031224,GO:0031227,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031581,GO:0031625,GO:0031647,GO:0031958,GO:0031967,GO:0031974,GO:0031975,GO:0031982,GO:0031983,GO:0031984,GO:0032101,GO:0032103,GO:0032268,GO:0032269,GO:0032355,GO:0032501,GO:0032502,GO:0032504,GO:0032870,GO:0032879,GO:0032991,GO:0033036,GO:0033043,GO:0033116,GO:0033143,GO:0033144,GO:0033218,GO:0033365,GO:0033554,GO:0033574,GO:0033993,GO:0034248,GO:0034249,GO:0034329,GO:0034330,GO:0034504,GO:0034613,GO:0034620,GO:0034622,GO:0034975,GO:0034976,GO:0035051,GO:0035257,GO:0035258,GO:0035966,GO:0035967,GO:0036500,GO:0040012,GO:0040013,GO:0040017,GO:0040020,GO:0042048,GO:0042127,GO:0042175,GO:0042221,GO:0042277,GO:0042493,GO:0042562,GO:0042590,GO:0042592,GO:0042692,GO:0042824,GO:0042886,GO:0042921,GO:0042981,GO:0043067,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043401,GO:0043900,GO:0043901,GO:0043933,GO:0044085,GO:0044183,GO:0044238,GO:0044322,GO:0044389,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0044877,GO:0045169,GO:0045184,GO:0045335,GO:0045471,GO:0045595,GO:0045596,GO:0045597,GO:0045664,GO:0045665,GO:0045785,GO:0045786,GO:0045787,GO:0045807,GO:0045892,GO:0045934,GO:0046677,GO:0046872,GO:0046907,GO:0046914,GO:0048002,GO:0048232,GO:0048284,GO:0048385,GO:0048387,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048583,GO:0048584,GO:0048585,GO:0048609,GO:0048699,GO:0048731,GO:0048738,GO:0048856,GO:0048869,GO:0048878,GO:0050681,GO:0050764,GO:0050766,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050821,GO:0050839,GO:0050896,GO:0050920,GO:0050921,GO:0051049,GO:0051050,GO:0051082,GO:0051087,GO:0051093,GO:0051094,GO:0051128,GO:0051130,GO:0051146,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051179,GO:0051208,GO:0051234,GO:0051235,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051270,GO:0051271,GO:0051272,GO:0051427,GO:0051445,GO:0051604,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0051783,GO:0051960,GO:0051961,GO:0055007,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0060205,GO:0060255,GO:0060284,GO:0060537,GO:0060627,GO:0061024,GO:0061025,GO:0061061,GO:0061077,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070887,GO:0071156,GO:0071157,GO:0071241,GO:0071248,GO:0071285,GO:0071310,GO:0071383,GO:0071396,GO:0071407,GO:0071495,GO:0071556,GO:0071682,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0080090,GO:0090174,GO:0090398,GO:0097159,GO:0097223,GO:0097305,GO:0097708,GO:0098552,GO:0098553,GO:0098588,GO:0098657,GO:0098771,GO:0098796,GO:0098805,GO:0098827,GO:0099024,GO:0099503,GO:1900024,GO:1900026,GO:1901163,GO:1901164,GO:1901222,GO:1901224,GO:1901363,GO:1901564,GO:1901654,GO:1901700,GO:1902531,GO:1902533,GO:1902679,GO:1903506,GO:1903507,GO:1990668,GO:1990904,GO:2000026,GO:2000112,GO:2000113,GO:2000145,GO:2000146,GO:2000147,GO:2000241,GO:2000242,GO:2000508,GO:2000510,GO:2001141
EggNOG free text desc.unfolded protein binding
EggNOG OGsKOG0674@1,KOG0674@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110,ko04091
Hectar predicted targeting categoryother localisation
Exons2
Model size399
Cds size399
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929693.9262376-CDS-H-elongata_contig118647:258..4831622929693.9262376-CDS-H-elongata_contig118647:258..483Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118647 259..483 +
1691679121.5446146-CDS-H-elongata_contig118647:258..4831691679121.5446146-CDS-H-elongata_contig118647:258..483Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118647 259..483 +
1622929693.9450803-CDS-H-elongata_contig118647:890..10641622929693.9450803-CDS-H-elongata_contig118647:890..1064Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118647 891..1064 +
1691679121.555735-CDS-H-elongata_contig118647:890..10641691679121.555735-CDS-H-elongata_contig118647:890..1064Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118647 891..1064 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118647.1442.1prot_H-elongata_contig118647.1442.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig118647 259..1064 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig118647.1442.1

>prot_H-elongata_contig118647.1442.1 ID=prot_H-elongata_contig118647.1442.1|Name=mRNA_H-elongata_contig118647.1442.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
AEKPDDWDEDEDGEWEPTMIKNPEYKGVWKPKMIPNPDYNGPWEHPKIPN
PDFKIDDKLAQRCTGCTHIGFELWQVKAGTLFDEIIVTDSLEEAQAFAEE
TWAVKKDKEKEVHEEIKAKEKEEEQVAGRLVG*
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mRNA from alignment at H-elongata_contig118647:259..1064+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig118647.1442.1 ID=mRNA_H-elongata_contig118647.1442.1|Name=mRNA_H-elongata_contig118647.1442.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=806bp|location=Sequence derived from alignment at H-elongata_contig118647:259..1064+ (Himanthalia elongata Himel1 dioecious)
GCTGAGAAACCCGATGATTGGGACGAGGATGAGGACGGAGAGTGGGAGCC
GACTATGATCAAGAACCCTGAATACAAGGGTGTCTGGAAGCCGAAGATGA
TCCCTAACCCGGACTATAACGGCCCCTGGGAACACCCCAAGATACCCAAC
CCCGACTTCAAGATAGACGACAAGCTGGCGCAGAGGTGCACGGGGTGCAC
CCACATCGGCTTCGAGCTGTGGCAGGTTTGTTTGTTGGGTCGGTTCCTAC
CGTAGATGCTGACGCCACTGTAAGGGAAATTGTTAACAGGCTCAAGACAG
ACTTTAGTTAAGGTTTGCTTTATTTGGGATGGCTTTTGCGGGGAGGGATG
GAGAAGAACAGGATATTTAGTTTTAGACATGAGCGCGCGCGAGAGAGAGA
ACTAATGCAGCCTGGTGGAAAAGAAGACACACATGTATAACACAATGCGC
ACGTTATTCTTTTAACGAGCAAATTATTATATATCATACATATTTATAGT
AATATCCTATGCTGGCATATTCTGATCCACGCATGCTATATTCTAGACAC
ACGTATGATGCACAATGTTATTCGATACAAATCATGCTTATATTAATCTA
CCGACACTCCCTGATGGTCCACAACCTGGCAGGTGAAGGCGGGCACGCTC
TTTGACGAGATTATCGTCACGGACTCGCTCGAAGAAGCACAAGCGTTCGC
CGAGGAGACGTGGGCTGTGAAGAAGGACAAGGAGAAGGAGGTGCACGAGG
AGATCAAGGCCAAGGAAAAGGAGGAAGAACAGGTAGCGGGGAGACTCGTA
GGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig118647:259..1064+

>mRNA_H-elongata_contig118647.1442.1 ID=mRNA_H-elongata_contig118647.1442.1|Name=mRNA_H-elongata_contig118647.1442.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig118647:259..1064+ (Himanthalia elongata Himel1 dioecious)
GCTGAGAAACCCGATGATTGGGACGAGGATGAGGACGGAGAGTGGGAGCC
GACTATGATCAAGAACCCTGAATACAAGGGTGTCTGGAAGCCGAAGATGA
TCCCTAACCCGGACTATAACGGCCCCTGGGAACACCCCAAGATACCCAAC
CCCGACTTCAAGATAGACGACAAGCTGGCGCAGAGGTGCACGGGGTGCAC
CCACATCGGCTTCGAGCTGTGGCAGGCTGAGAAACCCGATGATTGGGACG
AGGATGAGGACGGAGAGTGGGAGCCGACTATGATCAAGAACCCTGAATAC
AAGGGTGTCTGGAAGCCGAAGATGATCCCTAACCCGGACTATAACGGCCC
CTGGGAACACCCCAAGATACCCAACCCCGACTTCAAGATAGACGACAAGC
TGGCGCAGAGGTGCACGGGGTGCACCCACATCGGCTTCGAGCTGTGGCAG
GTGAAGGCGGGCACGCTCTTTGACGAGATTATCGTCACGGACTCGCTCGA
AGAAGCACAAGCGTTCGCCGAGGAGACGTGGGCTGTGAAGAAGGACAAGG
AGAAGGAGGTGCACGAGGAGATCAAGGCCAAGGAAAAGGAGGAAGAACAG
GTAGCGGGGAGACTCGTAGGGTAGGTGAAGGCGGGCACGCTCTTTGACGA
GATTATCGTCACGGACTCGCTCGAAGAAGCACAAGCGTTCGCCGAGGAGA
CGTGGGCTGTGAAGAAGGACAAGGAGAAGGAGGTGCACGAGGAGATCAAG
GCCAAGGAAAAGGAGGAAGAACAGGTAGCGGGGAGACTCGTAGGGTAG
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