mRNA_H-elongata_contig118622.1438.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig118622.1438.1
Unique NamemRNA_H-elongata_contig118622.1438.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig118622.1438.1 vs. uniprot
Match: A0A6H5JAL0_9PHAE (UmuC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAL0_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.590e-17
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 PSRTGKPMVVQQHADVVAVSYEARELGVTRHMSTATIRERFPSVRLVHVQ 150
            P+  GKPMVVQQHAD++AVSYEAR LGV +HM TATIR   PSV+LVHV+
Sbjct:   68 PTLVGKPMVVQQHADIIAVSYEARALGVRKHMPTATIRREHPSVKLVHVE 117
[Close]
BLAST of mRNA_H-elongata_contig118622.1438.1 vs. uniprot
Match: D7FLJ9_ECTSI (DNA-directed DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ9_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 3.660e-15
Identity = 35/50 (70.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 PSRTGKPMVVQQHADVVAVSYEARELGVTRHMSTATIRERFPSVRLVHVQ 150
            P+  GKP+VVQQHAD++AVSYEAR LGV +HM TATIR   PSV+LVHV+
Sbjct:   66 PTLVGKPIVVQQHADIIAVSYEARALGVMKHMPTATIRREHPSVKLVHVE 115
[Close]
BLAST of mRNA_H-elongata_contig118622.1438.1 vs. uniprot
Match: A0A7S2W4J4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W4J4_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.700e-11
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 PSRTGKPMVVQQHADVVAVSYEARELGVTRHMSTATIRERFPSVRLVH 144
            P   G+P+ VQQH D++AVSYEAR LGV +HM  A +R +FPSV LVH
Sbjct:   31 PRLRGQPVAVQQHQDLIAVSYEARALGVQKHMLPADVRAQFPSVILVH 78
[Close]
BLAST of mRNA_H-elongata_contig118622.1438.1 vs. uniprot
Match: A0A835ZFL7_9STRA (UmuC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFL7_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 7.930e-11
Identity = 29/47 (61.70%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    7 RTGKPMVVQQHADVVAVSYEARELGVTRHMSTATIRERFPSVRLVHV 147
            R   P  +QQH D++AVSYEAR LGV +HM  A +R RFP VRLVHV
Sbjct:   28 RAPTPCALQQHQDIIAVSYEARALGVAKHMRPAEVRRRFPDVRLVHV 74
[Close]
BLAST of mRNA_H-elongata_contig118622.1438.1 vs. uniprot
Match: UPI0001FE586D (hypothetical protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=UPI0001FE586D)

HSP 1 Score: 56.2 bits (134), Expect = 7.760e-8
Identity = 23/49 (46.94%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    1 PSRTGKPMVVQQHADVVAVSYEARELGVTRHMSTATIRERFPSVRLVHV 147
            P   GKP+ +QQH D++A+SYEAR LG+ +H     +R   P V +VHV
Sbjct:   28 PWLRGKPIALQQHQDIIALSYEARALGIAKHTKPGVVRATHPEVTIVHV 76
[Close]
BLAST of mRNA_H-elongata_contig118622.1438.1 vs. uniprot
Match: A0A7S1IA08_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IA08_9EUGL)

HSP 1 Score: 51.2 bits (121), Expect = 1.740e-6
Identity = 24/49 (48.98%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:    1 PSRTGKPMVVQQHADVVAVSYEARELGVTRHMSTATIRERFPSVRLVHV 147
            PS  GK + VQQH D+++VSYEAR  GV +H      + R P + LVHV
Sbjct:   25 PSLKGKKVAVQQHQDIISVSYEARAAGVKKHDLPEEAKRRCPDLILVHV 73
[Close]
BLAST of mRNA_H-elongata_contig118622.1438.1 vs. uniprot
Match: UPI0007381BEA (DNA polymerase eta n=1 Tax=Diachasma alloeum TaxID=454923 RepID=UPI0007381BEA)

HSP 1 Score: 49.7 bits (117), Expect = 1.600e-5
Identity = 24/52 (46.15%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:    1 PSRTGKPMVVQQHADVVAVSYEARELGVTRHMSTATIRERFPSVRLVHVQVG 156
            P   G+P+VV Q+  V+AVSYEAR LGVTR + +   +E+ PSV +V+  + 
Sbjct:   27 PHLKGQPLVVSQNNVVLAVSYEARALGVTRFLRSEDAKEKCPSVAIVNSPIS 78
[Close]
BLAST of mRNA_H-elongata_contig118622.1438.1 vs. uniprot
Match: UPI001CDC530B (DNA polymerase eta-like n=1 Tax=Aphidius gifuensis TaxID=684658 RepID=UPI001CDC530B)

HSP 1 Score: 48.9 bits (115), Expect = 2.970e-5
Identity = 23/49 (46.94%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:    1 PSRTGKPMVVQQHADVVAVSYEARELGVTRHMSTATIRERFPSVRLVHV 147
            P   GKPMVV Q   V+AV+YEAR+LG++R +     +E++P V +V V
Sbjct:   27 PELKGKPMVVSQFNMVLAVNYEARDLGISRFVRGDEAKEKYPDVNVVSV 75
[Close]
BLAST of mRNA_H-elongata_contig118622.1438.1 vs. uniprot
Match: A0A834XXM8_9HYME (Uncharacterized protein n=1 Tax=Aphidius gifuensis TaxID=684658 RepID=A0A834XXM8_9HYME)

HSP 1 Score: 48.9 bits (115), Expect = 2.990e-5
Identity = 23/49 (46.94%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:    1 PSRTGKPMVVQQHADVVAVSYEARELGVTRHMSTATIRERFPSVRLVHV 147
            P   GKPMVV Q   V+AV+YEAR+LG++R +     +E++P V +V V
Sbjct:   27 PELKGKPMVVSQFNMVLAVNYEARDLGISRFVRGDEAKEKYPDVNVVSV 75
[Close]
BLAST of mRNA_H-elongata_contig118622.1438.1 vs. uniprot
Match: UPI0005AC3523 (DNA polymerase eta-like n=1 Tax=Fopius arisanus TaxID=64838 RepID=UPI0005AC3523)

HSP 1 Score: 48.9 bits (115), Expect = 2.990e-5
Identity = 23/52 (44.23%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:    1 PSRTGKPMVVQQHADVVAVSYEARELGVTRHMSTATIRERFPSVRLVHVQVG 156
            P   G+P+VV Q+  V+AVSYEAR LGVTR + +   +E+ P+V +V+  + 
Sbjct:   27 PELKGQPLVVSQNNVVLAVSYEARALGVTRFIRSEEAKEKCPTVNIVNSPIS 78
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118622.1438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5JAL0_9PHAE1.590e-1772.00UmuC domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FLJ9_ECTSI3.660e-1570.00DNA-directed DNA polymerase n=1 Tax=Ectocarpus sil... [more]
A0A7S2W4J4_9STRA2.700e-1160.42Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A835ZFL7_9STRA7.930e-1161.70UmuC domain-containing protein n=1 Tax=Tribonema m... [more]
UPI0001FE586D7.760e-846.94hypothetical protein n=1 Tax=Capsaspora owczarzaki... [more]
A0A7S1IA08_9EUGL1.740e-648.98Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
UPI0007381BEA1.600e-546.15DNA polymerase eta n=1 Tax=Diachasma alloeum TaxID... [more]
UPI001CDC530B2.970e-546.94DNA polymerase eta-like n=1 Tax=Aphidius gifuensis... [more]
A0A834XXM8_9HYME2.990e-546.94Uncharacterized protein n=1 Tax=Aphidius gifuensis... [more]
UPI0005AC35232.990e-544.23DNA polymerase eta-like n=1 Tax=Fopius arisanus Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118622contigH-elongata_contig118622:1371..1529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue7.6e-09
Seed eggNOG ortholog2880.D7FLJ9
Preferred nameeso1
KEGG koko:K03509,ko:K03510
KEGG Pathwayko01524,ko03460,map01524,map03460
GOsGO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000731,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0008080,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0022402,GO:0031974,GO:0031981,GO:0033554,GO:0034061,GO:0034085,GO:0034086,GO:0034087,GO:0034088,GO:0034641,GO:0034645,GO:0034654,GO:0035861,GO:0042276,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0048285,GO:0050896,GO:0051276,GO:0051716,GO:0052858,GO:0070013,GO:0070601,GO:0070987,GO:0071704,GO:0071840,GO:0071897,GO:0071960,GO:0071962,GO:0090304,GO:0090734,GO:0098813,GO:0140014,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1903047
EggNOG free text desc.DNA synthesis involved in DNA repair
EggNOG OGsCOG0389@1,KOG2095@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size138
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929693.476567-CDS-H-elongata_contig118622:1370..15081622929693.476567-CDS-H-elongata_contig118622:1370..1508Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118622 1371..1508 -
1691679121.3565865-CDS-H-elongata_contig118622:1370..15081691679121.3565865-CDS-H-elongata_contig118622:1370..1508Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118622 1371..1508 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929693.4897437-UTR-H-elongata_contig118622:1508..15291622929693.4897437-UTR-H-elongata_contig118622:1508..1529Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig118622 1509..1529 -
1691679121.3724298-UTR-H-elongata_contig118622:1508..15291691679121.3724298-UTR-H-elongata_contig118622:1508..1529Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig118622 1509..1529 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118622.1438.1prot_H-elongata_contig118622.1438.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig118622 1371..1508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig118622.1438.1

>prot_H-elongata_contig118622.1438.1 ID=prot_H-elongata_contig118622.1438.1|Name=mRNA_H-elongata_contig118622.1438.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
MVVQQHADVVAVSYEARELGVTRHMSTATIRERFPSVRLVHVQVG*
back to top

mRNA from alignment at H-elongata_contig118622:1371..1529-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig118622.1438.1 ID=mRNA_H-elongata_contig118622.1438.1|Name=mRNA_H-elongata_contig118622.1438.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig118622:1371..1529- (Himanthalia elongata Himel1 dioecious)
CCCTCTCGTACAGGAAAGCCGATGGTCGTGCAGCAGCACGCTGACGTCGT
TGCCGTGAGCTATGAAGCCCGTGAGCTTGGCGTGACCAGGCACATGTCGA
CGGCGACCATCCGGGAGCGCTTCCCCTCTGTCAGGCTTGTCCACGTTCAG
GTTGGTTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig118622:1371..1529-

>mRNA_H-elongata_contig118622.1438.1 ID=mRNA_H-elongata_contig118622.1438.1|Name=mRNA_H-elongata_contig118622.1438.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig118622:1371..1529- (Himanthalia elongata Himel1 dioecious)
ATGGTCGTGCAGCAGCACGCTGACGTCGTTGCCGTGAGCTATGAAGCCCG
TGAGCTTGGCGTGACCAGGCACATGTCGACGGCGACCATCCGGGAGCGCT
TCCCCTCTGTCAGGCTTGTCCACGTTCAGGTTGGTTAAATGGTCGTGCAG
CAGCACGCTGACGTCGTTGCCGTGAGCTATGAAGCCCGTGAGCTTGGCGT
GACCAGGCACATGTCGACGGCGACCATCCGGGAGCGCTTCCCCTCTGTCA
GGCTTGTCCACGTTCAGGTTGGTTAA
back to top