prot_H-elongata_contig118622.1438.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig118622.1438.1
Unique Nameprot_H-elongata_contig118622.1438.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length46
Homology
BLAST of mRNA_H-elongata_contig118622.1438.1 vs. uniprot
Match: A0A6H5JAL0_9PHAE (UmuC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAL0_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.460e-13
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 0
Query:    1 MVVQQHADVVAVSYEARELGVTRHMSTATIRERFPSVRLVHVQ 43
            MVVQQHAD++AVSYEAR LGV +HM TATIR   PSV+LVHV+
Sbjct:   75 MVVQQHADIIAVSYEARALGVRKHMPTATIRREHPSVKLVHVE 117          
BLAST of mRNA_H-elongata_contig118622.1438.1 vs. uniprot
Match: D7FLJ9_ECTSI (DNA-directed DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ9_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.230e-11
Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = 0
Query:    1 MVVQQHADVVAVSYEARELGVTRHMSTATIRERFPSVRLVHVQ 43
            +VVQQHAD++AVSYEAR LGV +HM TATIR   PSV+LVHV+
Sbjct:   73 IVVQQHADIIAVSYEARALGVMKHMPTATIRREHPSVKLVHVE 115          
BLAST of mRNA_H-elongata_contig118622.1438.1 vs. uniprot
Match: A0A835ZFL7_9STRA (UmuC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFL7_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.330e-9
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 0
Query:    4 QQHADVVAVSYEARELGVTRHMSTATIRERFPSVRLVHV 42
            QQH D++AVSYEAR LGV +HM  A +R RFP VRLVHV
Sbjct:   36 QQHQDIIAVSYEARALGVAKHMRPAEVRRRFPDVRLVHV 74          
BLAST of mRNA_H-elongata_contig118622.1438.1 vs. uniprot
Match: A0A7S2W4J4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W4J4_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.000e-8
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 0
Query:    3 VQQHADVVAVSYEARELGVTRHMSTATIRERFPSVRLVH 41
            VQQH D++AVSYEAR LGV +HM  A +R +FPSV LVH
Sbjct:   40 VQQHQDLIAVSYEARALGVQKHMLPADVRAQFPSVILVH 78          
BLAST of mRNA_H-elongata_contig118622.1438.1 vs. uniprot
Match: UPI0001FE586D (hypothetical protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=UPI0001FE586D)

HSP 1 Score: 47.8 bits (112), Expect = 5.620e-5
Identity = 19/39 (48.72%), Postives = 26/39 (66.67%), Query Frame = 0
Query:    4 QQHADVVAVSYEARELGVTRHMSTATIRERFPSVRLVHV 42
            QQH D++A+SYEAR LG+ +H     +R   P V +VHV
Sbjct:   38 QQHQDIIALSYEARALGIAKHTKPGVVRATHPEVTIVHV 76          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118622.1438.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JAL0_9PHAE1.460e-1374.42UmuC domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FLJ9_ECTSI1.230e-1172.09DNA-directed DNA polymerase n=1 Tax=Ectocarpus sil... [more]
A0A835ZFL7_9STRA1.330e-969.23UmuC domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S2W4J4_9STRA2.000e-866.67Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
UPI0001FE586D5.620e-548.72hypothetical protein n=1 Tax=Capsaspora owczarzaki... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001126UmuC domainPFAMPF00817IMScoord: 1..42
e-value: 4.3E-7
score: 30.0
NoneNo IPR availableGENE3D2.30.40.30coord: 1..45
e-value: 2.2E-12
score: 48.9
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 2..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118622contigH-elongata_contig118622:1371..1508 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118622.1438.1mRNA_H-elongata_contig118622.1438.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig118622 1371..1529 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig118622.1438.1 ID=prot_H-elongata_contig118622.1438.1|Name=mRNA_H-elongata_contig118622.1438.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
MVVQQHADVVAVSYEARELGVTRHMSTATIRERFPSVRLVHVQVG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001126UmuC