mRNA_H-elongata_contig11860.1435.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig11860.1435.1 vs. uniprot
Match: A0A6H5JJY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY2_9PHAE) HSP 1 Score: 134 bits (337), Expect = 4.750e-35 Identity = 85/156 (54.49%), Postives = 105/156 (67.31%), Query Frame = -2
Query: 54 SGGGSGLLPSVDDLFSNTGGPDFLSTPGAGKEFVVEAMRKEKAEKNNV-STSSSTLSSANPGGSSNLNGYGNKRVQGAGAA---TAVGVKRPKGGSAGPAGPPADKKGGARGKDATDKVTAKERVKGQRLKGQSGIGSDFRVWKSDLEMTMRQQYD 509
SGGGS LLPSV DLFS+T GPDFL+ PGAG++F+V+AM+KEK ++ +T+ + G KR + A TAVGVK+PKGG DK+ A GK+ K++AK++VKGQRLKGQSGIGSDFR WKSDLEMTMRQQYD
Sbjct: 114 SGGGS-LLPSVSDLFSSTAGPDFLNAPGAGQDFIVKAMKKEKKKQTAAEATTGDPTAXXXXXXXXXXXGATAKRERDVAAGVRGTAVGVKKPKGGXXXXXXXXVDKRKAAGGKE---KISAKDKVKGQRLKGQSGIGSDFRTWKSDLEMTMRQQYD 265
BLAST of mRNA_H-elongata_contig11860.1435.1 vs. uniprot
Match: D7G8J9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8J9_ECTSI) HSP 1 Score: 104 bits (260), Expect = 2.330e-25 Identity = 55/72 (76.39%), Postives = 63/72 (87.50%), Query Frame = -2
Query: 54 TAVGVKRPKGGSAGPAGPPADKKGGARGKDATDKVTAKERVKGQRLKGQSGIGSDFRVWKSDLEMTMRQQYD 269
TAVGVK+PKGG+AGPAGPP DK+ A K+ K++AK++VKGQRLKGQSGIGSDFR WKSDLEMTMRQQYD
Sbjct: 43 TAVGVKKPKGGAAGPAGPPVDKRKAAGDKE---KISAKDKVKGQRLKGQSGIGSDFRTWKSDLEMTMRQQYD 111
BLAST of mRNA_H-elongata_contig11860.1435.1 vs. uniprot
Match: A0A7S2W639_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W639_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 7.240e-19 Identity = 68/167 (40.72%), Postives = 91/167 (54.49%), Query Frame = -2
Query: 54 KEEVGKTRGEERLNCSGGGSGLLPSVDDLFSNTGGPDFLSTPGAGKEFVVEAMRKEKAEKNNVSTSSSTLSSANPGGSSNLNGYGNKRVQGAGAATAVGVKRPKGGSAGPAGPPADKKGGARGKDATDKVTAKERVKGQRLKGQSGIGSDFRVWKSDLEMTMRQQYD 554
K +VG G++R GLLPSV D+F++T GP FL+ P +EF V M+K +++ +S +S+ P G+ ATA P G S+G P A K A+ DK+ KERVK QRL+GQSGIG+DFR WK+D EM MRQQ+D
Sbjct: 3 KTKVGAVAGKKRPV-----PGLLPSVADVFASTDGPAFLAQPS--EEFSVSPMKKSRSQPQPKKEPASHSASSKPRGAE---------------ATAX-XAAPGGASSGR--PEASKVSDAQKAGTKDKLNRKERVKMQRLRGQSGIGADFRSWKTDEEMRMRQQFD 144
BLAST of mRNA_H-elongata_contig11860.1435.1 vs. uniprot
Match: A0A7S2FM24_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FM24_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 9.520e-15 Identity = 58/148 (39.19%), Postives = 72/148 (48.65%), Query Frame = -2
Query: 54 SGLLPSVDDLFSNTGGPDFLSTPGAGKEFVVEAMRKEKAEKNNVSTSSSTLSSANPGGSSNLNGYGNKRVQGAGAATAVGVKRPKGGSAGPAGPPADKKGGARGKDATDKVTAKERVKGQRLKGQSGIGSDFRVWKSDLEMTMRQQYD 497
S LLPSV+DLF+ T P FL+ P F V M+K K L G G+ +V K A P P + KK G++ +K KERVK QR+KGQ+GIG DFRVW+S+ EM MRQQYD
Sbjct: 66 SQLLPSVNDLFAGTSDPSFLAVPTKEDSFTVAPMKKRK-----------------------LGGLGSNESAPEKKNDSVKRKSHAPPRAAPT-PQSVKKHVPSGRERKEKPDRKERVKQQRMKGQAGIGEDFRVWRSETEMAMRQQYD 189
BLAST of mRNA_H-elongata_contig11860.1435.1 vs. uniprot
Match: A0A7S3XNJ5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNJ5_HETAK) HSP 1 Score: 79.3 bits (194), Expect = 1.500e-14 Identity = 60/155 (38.71%), Postives = 82/155 (52.90%), Query Frame = -2
Query: 54 LPSVDDLFSNTGGPDFLSTPGAGKEFVVEAMRKEKAEKNNVSTSSSTLSSANPGGSSNLNGYGNKRVQGAGAATAV----------GVKRPKGGSAGPAGPPADKKGGARGKDATDKVTAKERVKGQRLKGQSGIGSDFRVWKSDLEMTMRQQYD 488
LPSVDDLF++T GPDFLS+ +EF+ +++++ K+ + L K+V A AA+ V K K S+ P P DKK + K +AK+RVK QRLKGQ+GIG DFR WK++ EM MRQQ+D
Sbjct: 78 LPSVDDLFASTSGPDFLSS-NVSREFIAPSLKRKSLAKDPEEVARQKLEKK-------------KKVYSATAASGVTSTEQKAIKFNQKEEKKASSAP-NPFMDKK-----EKEARKQSAKDRVKNQRLKGQAGIGEDFRQWKTEEEMRMRQQFD 212
BLAST of mRNA_H-elongata_contig11860.1435.1 vs. uniprot
Match: A0A1V9YGD8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGD8_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 3.210e-13 Identity = 61/150 (40.67%), Postives = 80/150 (53.33%), Query Frame = -2
Query: 54 LPSVDDLFSNTGGPDFLSTPGAG--KEFVVEAMRKEKAEKNNVSTSSSTLSSANPG--GSSNLNGYGNKRVQGAGAAT-AVGVKRPKGGSAGPAGPPADKKGGARGKDATDKVTAKERVKGQRLKGQSGIGSDFRVWKSDLEMTMRQQYD 488
LPSVD++F+ T P FL P + F +E KE+ + L + P G +N + G + T A+ VKR +G A G A K A G +KV+ K+RVK QRL+GQSGIGSDFR WKS+ EM +RQQYD
Sbjct: 35 LPSVDEVFAATQRPTFLDKPTVASMEVFDIEERPKERDNEEASGDLEQPLENDEPASPGPRIVNSI--EVFPGLSSPTRAMPVKRQRGQPASLNGASAGTKRKAEGNKDGNKVSGKDRVKAQRLRGQSGIGSDFRGWKSETEMQLRQQYD 182
BLAST of mRNA_H-elongata_contig11860.1435.1 vs. uniprot
Match: A0A6G0WZM1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WZM1_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 9.580e-11 Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = -2
Query: 54 TDKVTAKERVKGQRLKGQSGIGSDFRVWKSDLEMTMRQQYD 176
TDK + KERVK QRLKGQSGIGSDFR WKSD EM MRQ++D
Sbjct: 129 TDKSSGKERVKQQRLKGQSGIGSDFRTWKSDTEMKMRQEFD 169
BLAST of mRNA_H-elongata_contig11860.1435.1 vs. uniprot
Match: A0A1V9YF54_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YF54_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 8.190e-10 Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = -2
Query: 54 ATDKVTAKERVKGQRLKGQSGIGSDFRVWKSDLEMTMRQQYD 179
A K T KERVK QRLKGQSGIG+DFR WKS+ EM +RQQYD
Sbjct: 120 AETKNTGKERVKAQRLKGQSGIGNDFRTWKSETEMQLRQQYD 161
BLAST of mRNA_H-elongata_contig11860.1435.1 vs. uniprot
Match: T0Q9L0_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0Q9L0_SAPDV) HSP 1 Score: 65.9 bits (159), Expect = 1.170e-9 Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = -2
Query: 54 ATDKVTAKERVKGQRLKGQSGIGSDFRVWKSDLEMTMRQQYD 179
A DK + K+RVK QRLKGQSGIGSDFR WKS+ EM +RQQYD
Sbjct: 158 ADDKPSGKDRVKAQRLKGQSGIGSDFRGWKSETEMQLRQQYD 199
BLAST of mRNA_H-elongata_contig11860.1435.1 vs. uniprot
Match: D0NJ84_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NJ84_PHYIT) HSP 1 Score: 63.9 bits (154), Expect = 1.700e-9 Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = -2
Query: 54 DKVTAKERVKGQRLKGQSGIGSDFRVWKSDLEMTMRQQYD 173
+K KERVK QRLKGQ+GIGSDFRVWKS+ EM +RQQ+D
Sbjct: 94 EKKDGKERVKNQRLKGQAGIGSDFRVWKSETEMALRQQFD 133 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11860.1435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11860.1435.1 >prot_H-elongata_contig11860.1435.1 ID=prot_H-elongata_contig11860.1435.1|Name=mRNA_H-elongata_contig11860.1435.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=223bp PNKNVNRRSAKEKSMTNQSYCWRMVISRSLFHTRKSDPIPDCPFSRCPFTback to top mRNA from alignment at H-elongata_contig11860:3455..4124+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig11860.1435.1 ID=mRNA_H-elongata_contig11860.1435.1|Name=mRNA_H-elongata_contig11860.1435.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=670bp|location=Sequence derived from alignment at H-elongata_contig11860:3455..4124+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig11860:3455..4124+ >mRNA_H-elongata_contig11860.1435.1 ID=mRNA_H-elongata_contig11860.1435.1|Name=mRNA_H-elongata_contig11860.1435.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1338bp|location=Sequence derived from alignment at H-elongata_contig11860:3455..4124+ (Himanthalia elongata Himel1 dioecious)back to top |