prot_H-elongata_contig11860.1435.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig11860.1435.1
Unique Nameprot_H-elongata_contig11860.1435.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length223
Homology
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BLAST of mRNA_H-elongata_contig11860.1435.1 vs. uniprot
Match: A0A7S2W5X2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W5X2_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.260e-7
Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 0 
Query:   18 QSYCWRMVISRSLFHTRKSDPIPDCPFSRCPFTLSLAVTLS-VASFPLAPPFLSAGGP 74
            QS CWRM IS S+FH RKS P+PDCP  RC FT S   +LS V +F  +   L++G P
Sbjct:   33 QSNCWRMRISSSVFHERKSAPMPDCPRRRCIFTRSFRFSLSFVPAFCASDTLLASGRP 90
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11860.1435.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2W5X2_9STRA1.260e-753.45Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11860contigH-elongata_contig11860:3455..4123 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11860.1435.1mRNA_H-elongata_contig11860.1435.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig11860 3455..4124 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig11860.1435.1 ID=prot_H-elongata_contig11860.1435.1|Name=mRNA_H-elongata_contig11860.1435.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=223bp
PNKNVNRRSAKEKSMTNQSYCWRMVISRSLFHTRKSDPIPDCPFSRCPFT
LSLAVTLSVASFPLAPPFLSAGGPAGPADPPFGLFTPTAVAAPAPCTRLF
PYPLRLLLPPGFAEDKVDEEVETLFFSAFSFRMASTTNSLPAPGVLRKSG
PPVLLKRSSTEGSNPDPPPLQFKRSSPRVFPTSSFSFSLSPLSLPLSLSS
PSLPVPEEGFSAPLLSVLPDVGA
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