mRNA_H-elongata_contig118532.1430.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig118532.1430.1
Unique NamemRNA_H-elongata_contig118532.1430.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig118532.1430.1 vs. uniprot
Match: A0A6H5KEL6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEL6_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 1.590e-56
Identity = 99/124 (79.84%), Postives = 108/124 (87.10%), Query Frame = 1 
Query:    7 GFVEGVKNLFGGTERPPDPVVPVKVVYAPMLELCHEPQTVVAPLVRASLALHNEGALLAFLSGDLSPVDIMHQLSGLALQDVKDGFSGLGPLSDENDRVTLVRLYLVGLSYAMGVVPKGDRVVG 378
            GFV GVK    G ER  DP VPV+VVY PMLE CHEPQTVV+PLVRASLALHNEGALL FL+GD+SPVDIM++LSGLALQDVKDGF GLGP+SDENDRVTLVRLYL+GLSYAMG+VPKG   VG
Sbjct:  931 GFVVGVKRALIGPERTADPTVPVRVVYEPMLEHCHEPQTVVSPLVRASLALHNEGALLPFLAGDVSPVDIMYRLSGLALQDVKDGFGGLGPISDENDRVTLVRLYLLGLSYAMGIVPKGKEAVG 1054
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BLAST of mRNA_H-elongata_contig118532.1430.1 vs. uniprot
Match: D7G1T1_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T1_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 4.320e-56
Identity = 98/124 (79.03%), Postives = 108/124 (87.10%), Query Frame = 1 
Query:    7 GFVEGVKNLFGGTERPPDPVVPVKVVYAPMLELCHEPQTVVAPLVRASLALHNEGALLAFLSGDLSPVDIMHQLSGLALQDVKDGFSGLGPLSDENDRVTLVRLYLVGLSYAMGVVPKGDRVVG 378
            GFV G+K    G ER  DP VPV+VVY PMLE CHEPQTVV+PLVRASLALHNEGALL FL+GD+SPVDIM++LSGLALQDVKDGF GLGP+SDENDRVTLVRLYL+GLSYAMG+VPKG   VG
Sbjct:  896 GFVVGMKRALIGPERTADPTVPVRVVYEPMLEHCHEPQTVVSPLVRASLALHNEGALLPFLAGDVSPVDIMYRLSGLALQDVKDGFGGLGPISDENDRVTLVRLYLLGLSYAMGIVPKGKEAVG 1019
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118532.1430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KEL6_9PHAE1.590e-5679.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1T1_ECTSI4.320e-5679.03Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118532contigH-elongata_contig118532:221..971 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score197.6
Seed ortholog evalue3.5e-48
Seed eggNOG ortholog2880.D7G1T1
KEGG rclassRC00002,RC00078
KEGG koko:K00921
KEGG ReactionR05802,R10951
KEGG Pathwayko00562,ko04070,ko04145,ko04810,map00562,map04070,map04145,map04810
GOsGO:0008150,GO:0018996,GO:0022404,GO:0032501,GO:0042303,GO:0042395
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
EC2.7.1.150
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size378
Cds size378
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929692.8363442-CDS-H-elongata_contig118532:220..4541622929692.8363442-CDS-H-elongata_contig118532:220..454Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118532 221..454 +
1691679121.0612288-CDS-H-elongata_contig118532:220..4541691679121.0612288-CDS-H-elongata_contig118532:220..454Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118532 221..454 +
1622929692.8538747-CDS-H-elongata_contig118532:827..9711622929692.8538747-CDS-H-elongata_contig118532:827..971Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118532 828..971 +
1691679121.078107-CDS-H-elongata_contig118532:827..9711691679121.078107-CDS-H-elongata_contig118532:827..971Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118532 828..971 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118532.1430.1prot_H-elongata_contig118532.1430.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig118532 221..971 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig118532.1430.1

>prot_H-elongata_contig118532.1430.1 ID=prot_H-elongata_contig118532.1430.1|Name=mRNA_H-elongata_contig118532.1430.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
MIGFVEGVKNLFGGTERPPDPVVPVKVVYAPMLELCHEPQTVVAPLVRAS
LALHNEGALLAFLSGDLSPVDIMHQLSGLALQDVKDGFSGLGPLSDENDR
VTLVRLYLVGLSYAMGVVPKGDRVVG
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mRNA from alignment at H-elongata_contig118532:221..971+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig118532.1430.1 ID=mRNA_H-elongata_contig118532.1430.1|Name=mRNA_H-elongata_contig118532.1430.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=751bp|location=Sequence derived from alignment at H-elongata_contig118532:221..971+ (Himanthalia elongata Himel1 dioecious)
ATGATAGGCTTCGTGGAAGGGGTAAAGAACCTATTCGGGGGCACCGAGCG
CCCGCCCGACCCGGTCGTCCCTGTGAAGGTGGTTTACGCGCCCATGCTGG
AGCTTTGCCACGAGCCCCAGACAGTGGTGGCGCCGCTGGTGCGGGCGTCG
CTGGCGTTGCACAACGAAGGCGCCCTCCTTGCATTCCTCTCGGGCGACCT
CTCTCCCGTCGACATCATGCACCAACTTTCCGGGGTGAGTGATGATAGGG
CCATACCCTAATGGCGAACTGAACGATGCCTCTACTTGACTAGGTAAGGG
GGGAAGGGGGGGGTCTATTTCCTTACGACACTCACATAGGGCATGCACCT
CTCACGGTGCTAAGAAAGTGTGTATGTTAGGAGAGTCTGAATAAGCTTTA
ATAATAATAGAGTACTTCCAAGTATAACACGGAGTGTCTTTTGGTGCGTA
CGTCGTTTATTGCGAATCTGACGTGACGCGCCTTTTGTTATCCCTTTTCT
ACATGGTGTTTGTTTATGTGTTATTTTATTTAGTCTTTTGTACAGTGTTT
AATGCTGCCTACTTCGCATCGCACCATACGACCTGTATGCCGCCTGTTCT
CGAGCAGCTGGCACTGCAAGACGTGAAGGATGGGTTCTCGGGGCTGGGTC
CTCTCTCCGACGAGAATGACCGGGTCACCCTCGTCCGCCTCTACTTGGTG
GGCCTGTCCTACGCCATGGGGGTCGTGCCAAAGGGCGACAGGGTCGTGGG
T
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Coding sequence (CDS) from alignment at H-elongata_contig118532:221..971+

>mRNA_H-elongata_contig118532.1430.1 ID=mRNA_H-elongata_contig118532.1430.1|Name=mRNA_H-elongata_contig118532.1430.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig118532:221..971+ (Himanthalia elongata Himel1 dioecious)
ATGATAGGCTTCGTGGAAGGGGTAAAGAACCTATTCGGGGGCACCGAGCG
CCCGCCCGACCCGGTCGTCCCTGTGAAGGTGGTTTACGCGCCCATGCTGG
AGCTTTGCCACGAGCCCCAGACAGTGGTGGCGCCGCTGGTGCGGGCGTCG
CTGGCGTTGCACAACGAAGGCGCCCTCCTTGCATTCCTCTCGGGCGACCT
CTCTCCCGTCGACATCATGCACCAACTTTCCGGGATGATAGGCTTCGTGG
AAGGGGTAAAGAACCTATTCGGGGGCACCGAGCGCCCGCCCGACCCGGTC
GTCCCTGTGAAGGTGGTTTACGCGCCCATGCTGGAGCTTTGCCACGAGCC
CCAGACAGTGGTGGCGCCGCTGGTGCGGGCGTCGCTGGCGTTGCACAACG
AAGGCGCCCTCCTTGCATTCCTCTCGGGCGACCTCTCTCCCGTCGACATC
ATGCACCAACTTTCCGGGCTGGCACTGCAAGACGTGAAGGATGGGTTCTC
GGGGCTGGGTCCTCTCTCCGACGAGAATGACCGGGTCACCCTCGTCCGCC
TCTACTTGGTGGGCCTGTCCTACGCCATGGGGGTCGTGCCAAAGGGCGAC
AGGGTCGTGGGTCTGGCACTGCAAGACGTGAAGGATGGGTTCTCGGGGCT
GGGTCCTCTCTCCGACGAGAATGACCGGGTCACCCTCGTCCGCCTCTACT
TGGTGGGCCTGTCCTACGCCATGGGGGTCGTGCCAAAGGGCGACAGGGTC
GTGGGT
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