mRNA_H-elongata_contig118493.1427.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig118493.1427.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE) HSP 1 Score: 139 bits (349), Expect = 2.130e-36 Identity = 85/202 (42.08%), Postives = 121/202 (59.90%), Query Frame = 1
Query: 1 GVDLAVRESIACALGPDVIVPEHISAQLLKVRVIFKHRAVTTFIVGYAPTETAVTCQ------KSKFWKELRSTVAEVPASDHLILMMDTNARTGRKGEGGGLGDVRVLGPIGRDTRNDNGSRLLACAAEHKLSIVNTFFSTPKRGGNSDAFTYEGSKECHRWRLDYILVRQHDRMLVRNITVHPK--MKSVHRLVSASIRL 582
GV +A++E++ ++G + E IS +L+KVR+ TF+VGYAPTET T K FW L + + EV + DHL+++MD NARTGR+ GG D +VLG GRD N+NG RL A++++ S+ NT+F TPK GG F +K ++RLD+IL+RQ DR VRN++V S H LV ++RL
Sbjct: 52 GVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRR--GGCCDAKVLGAYGRDIMNNNGERLFGLASDNQFSLANTYFRTPK-GGVQHTFQ-SSNKGKEKYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRL 249
BLAST of mRNA_H-elongata_contig118493.1427.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE) HSP 1 Score: 139 bits (350), Expect = 4.980e-35 Identity = 83/202 (41.09%), Postives = 124/202 (61.39%), Query Frame = 1
Query: 1 GVDLAVRESIACALGPDVIVPEHISAQLLKVRVIFKHRAVTTFIVGYAPTETAVTCQ------KSKFWKELRSTVAEVPASDHLILMMDTNARTGRKGEGGGLGDVRVLGPIGRDTRNDNGSRLLACAAEHKLSIVNTFFSTPKRGGNSDAFTYEGSKECHRWRLDYILVRQHDRMLVRNITVHPK--MKSVHRLVSASIRL 582
GV +A++E++ ++G + E IS +L+KVR+ TF+VGYAPTET T + K FW L + + EV + DHL+++MD NARTGR+ +G D +++G GRD N+NG RLL A++++LS+ NT+F TPK GG F +K ++RLD+I +RQ DR VRN++V S H+LV ++RL
Sbjct: 249 GVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRKG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQ-SSNKGKEKYRLDFIFMRQADRRFVRNVSVKRVDFKDSDHKLVLTTVRL 446
BLAST of mRNA_H-elongata_contig118493.1427.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE) HSP 1 Score: 139 bits (351), Expect = 8.200e-35 Identity = 84/202 (41.58%), Postives = 123/202 (60.89%), Query Frame = 1
Query: 1 GVDLAVRESIACALGPDVIVPEHISAQLLKVRVIFKHRAVTTFIVGYAPTETAVTCQ------KSKFWKELRSTVAEVPASDHLILMMDTNARTGRKGEGGGLGDVRVLGPIGRDTRNDNGSRLLACAAEHKLSIVNTFFSTPKRGGNSDAFTYEGSKECHRWRLDYILVRQHDRMLVRNITVHPK--MKSVHRLVSASIRL 582
GV +A++E++ ++G + E IS +L+KVR+ TF+VGYAPTET T K FW L + + EV + DHL+++MD NARTGR+ +G D +++G GRD N+NG RLL A++++LS+ NT+F TPK GG F +K ++RLD+IL+RQ DR VRN++V S H LV ++RL
Sbjct: 52 GVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQ-SSNKGKEKYRLDFILMRQTDRRFVRNVSVKRVDFKDSDHNLVLTTVRL 249
BLAST of mRNA_H-elongata_contig118493.1427.1 vs. uniprot
Match: A0A6H5K259_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K259_9PHAE) HSP 1 Score: 135 bits (339), Expect = 8.540e-35 Identity = 83/202 (41.09%), Postives = 120/202 (59.41%), Query Frame = 1
Query: 1 GVDLAVRESIACALGPDVIVPEHISAQLLKVRVIFKHRAVTTFIVGYAPTETAVTCQ------KSKFWKELRSTVAEVPASDHLILMMDTNARTGRKGEGGGLGDVRVLGPIGRDTRNDNGSRLLACAAEHKLSIVNTFFSTPKRGGNSDAFTYEGSKECHRWRLDYILVRQHDRMLVRNITVHPK--MKSVHRLVSASIRL 582
GV +A++E++ ++G E I+ +L+KVR+ TF+VGYAPTET T K FW L + EV + DHL+++MD NARTGR+ +G D +++G GRD N+NG RLL A+ ++LS+ NT+F TPK GG F +K ++RLD+IL+RQ DR VRN++V S H LV ++RL
Sbjct: 52 GVGIAIKEAMWESVGEKGRTVECINPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDGEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASGNQLSLTNTYFRTPK-GGVQHTFQ-SSNKGKEKYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRL 249
BLAST of mRNA_H-elongata_contig118493.1427.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE) HSP 1 Score: 139 bits (351), Expect = 8.660e-35 Identity = 85/201 (42.29%), Postives = 120/201 (59.70%), Query Frame = 1
Query: 1 GVDLAVRESIACALGPDVIVPEHISAQLLKVRVIFKHRAVTTFIVGYAPTETAVTCQ------KSKFWKELRSTVAEVPASDHLILMMDTNARTGRKGEGGGLGDVRVLGPIGRDTRNDNGSRLLACAAEHKLSIVNTFFSTPKRGGNSDAFTYEGSKECHRWRLDYILVRQHDRMLVRNITVHPK--MKSVHRLVSASIR 579
GV +A++E++ ++G E IS +L+KVR+ TF+VGYAPTETA K FW L + + EV + DHL+++MD NARTGR+ +G D +++G GRD N+NG RLL AA+++LS++NT+F TPK G + KE HR LD+IL+RQ DR LVRN +V S H LV ++R
Sbjct: 52 GVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTVR 248
BLAST of mRNA_H-elongata_contig118493.1427.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE) HSP 1 Score: 139 bits (351), Expect = 8.770e-35 Identity = 85/201 (42.29%), Postives = 120/201 (59.70%), Query Frame = 1
Query: 1 GVDLAVRESIACALGPDVIVPEHISAQLLKVRVIFKHRAVTTFIVGYAPTETAVTCQ------KSKFWKELRSTVAEVPASDHLILMMDTNARTGRKGEGGGLGDVRVLGPIGRDTRNDNGSRLLACAAEHKLSIVNTFFSTPKRGGNSDAFTYEGSKECHRWRLDYILVRQHDRMLVRNITVHPK--MKSVHRLVSASIR 579
GV +A++E++ ++G E IS +L+KVR+ TF+VGYAPTETA K FW L + + EV + DHL+++MD NARTGR+ +G D +++G GRD N+NG RLL AA+++LS++NT+F TPK G + KE HR LD+IL+RQ DR LVRN +V S H LV ++R
Sbjct: 164 GVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTVR 360
BLAST of mRNA_H-elongata_contig118493.1427.1 vs. uniprot
Match: A0A6H5KSV0_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSV0_9PHAE) HSP 1 Score: 136 bits (343), Expect = 1.500e-34 Identity = 81/202 (40.10%), Postives = 122/202 (60.40%), Query Frame = 1
Query: 1 GVDLAVRESIACALGPDVIVPEHISAQLLKVRVIFKHRAVTTFIVGYAPTETAVTCQ------KSKFWKELRSTVAEVPASDHLILMMDTNARTGRKGEGGGLGDVRVLGPIGRDTRNDNGSRLLACAAEHKLSIVNTFFSTPKRGGNSDAFTYEGSKECHRWRLDYILVRQHDRMLVRNITVHPK--MKSVHRLVSASIRL 582
GV +A++E++ ++G + E IS +L+KVR+ TF++GYAPTET T K FW L + + EV + DHL+++MD NARTGR+ +G D +++G GRD N+NG RLL A++++LS+ NT+F TPK G + KE ++RLD+IL+RQ DR VR+++V S H LV ++RL
Sbjct: 52 GVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVMGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGAQHTFQSSNTGKE--KYRLDFILMRQTDRRFVRDVSVKRVDFKDSDHNLVLTTVRL 249
BLAST of mRNA_H-elongata_contig118493.1427.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE) HSP 1 Score: 134 bits (337), Expect = 9.310e-34 Identity = 81/202 (40.10%), Postives = 120/202 (59.41%), Query Frame = 1
Query: 1 GVDLAVRESIACALGPDVIVPEHISAQLLKVRVIFKHRAVTTFIVGYAPTETAVTCQ------KSKFWKELRSTVAEVPASDHLILMMDTNARTGRKGEGGGLGDVRVLGPIGRDTRNDNGSRLLACAAEHKLSIVNTFFSTPKRGGNSDAFTYEGSKECHRWRLDYILVRQHDRMLVRNITVHPK--MKSVHRLVSASIRL 582
GV + ++E++ ++G + E I +L+KVR+ F+VGYAPTET T K FW L + + EV + DHL+++MD NARTGR+ +G D +++G GRD N+NG RLL A++++LS+ NT+F TPK GG F +K ++RLD+IL+RQ DR VRN++V S H LV ++RL
Sbjct: 155 GVGIVIKEAMWESVGEEGRTVECICPRLMKVRLQIGRTCGVAFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQ-SSNKGKEKYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRL 352
BLAST of mRNA_H-elongata_contig118493.1427.1 vs. uniprot
Match: A0A6H5KCV1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCV1_9PHAE) HSP 1 Score: 134 bits (336), Expect = 9.620e-34 Identity = 82/202 (40.59%), Postives = 121/202 (59.90%), Query Frame = 1
Query: 1 GVDLAVRESIACALGPDVIVPEHISAQLLKVRVIFKHRAVTTFIVGYAPTETAVTCQ------KSKFWKELRSTVAEVPASDHLILMMDTNARTGRKGEGGGLGDVRVLGPIGRDTRNDNGSRLLACAAEHKLSIVNTFFSTPKRGGNSDAFTYEGSKECHRWRLDYILVRQHDRMLVRNITVHPK--MKSVHRLVSASIRL 582
GV +A++E++ ++G + E IS +L+KVR+ TF+VGYAPTET T K FW L + + EV + DHL+++MD NARTGR+ +G D +++G GRD N+NG RLL A++++LS+ NT+ TPK GG F +K ++ LD+IL+RQ DR VRN++V S H LV ++RL
Sbjct: 84 GVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDDNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYSRTPK-GGVQQTFQ-SSNKGKEKYCLDFILMRQTDRRFVRNVSVKRVDFKDSDHNLVLTTVRL 281
BLAST of mRNA_H-elongata_contig118493.1427.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE) HSP 1 Score: 136 bits (343), Expect = 1.020e-33 Identity = 83/202 (41.09%), Postives = 122/202 (60.40%), Query Frame = 1
Query: 1 GVDLAVRESIACALGPDVIVPEHISAQLLKVRVIFKHRAVTTFIVGYAPTETAVTCQ------KSKFWKELRSTVAEVPASDHLILMMDTNARTGRKGEGGGLGDVRVLGPIGRDTRNDNGSRLLACAAEHKLSIVNTFFSTPKRGGNSDAFTYEGSKECHRWRLDYILVRQHDRMLVRNITVHPK--MKSVHRLVSASIRL 582
GV +A++E++ ++G + E IS +L+KVR+ TF+V YAPTET T K FW L + + EV + DHL+++MD NARTGR+ +G D +++G GRD N+NG RLL A++++LS+ NT+F TPK GG F +K ++RLD+IL+RQ DR VRN++V S H LV ++RL
Sbjct: 731 GVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQ-SSNKGKEKYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRL 928 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118493.1427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig118493.1427.1 >prot_H-elongata_contig118493.1427.1 ID=prot_H-elongata_contig118493.1427.1|Name=mRNA_H-elongata_contig118493.1427.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=194bp GVDLAVRESIACALGPDVIVPEHISAQLLKVRVIFKHRAVTTFIVGYAPTback to top mRNA from alignment at H-elongata_contig118493:720..1301+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig118493.1427.1 ID=mRNA_H-elongata_contig118493.1427.1|Name=mRNA_H-elongata_contig118493.1427.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=582bp|location=Sequence derived from alignment at H-elongata_contig118493:720..1301+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig118493:720..1301+ >mRNA_H-elongata_contig118493.1427.1 ID=mRNA_H-elongata_contig118493.1427.1|Name=mRNA_H-elongata_contig118493.1427.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1164bp|location=Sequence derived from alignment at H-elongata_contig118493:720..1301+ (Himanthalia elongata Himel1 dioecious)back to top |