mRNA_H-elongata_contig117247.1348.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig117247.1348.1
Unique NamemRNA_H-elongata_contig117247.1348.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig117247.1348.1 vs. uniprot
Match: UPI0013D29528 (tetratricopeptide repeat protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D29528)

HSP 1 Score: 50.4 bits (119), Expect = 8.390e-7
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 1
Query:    1 QGKYNDSEEYYKRALAIFERVLGPDHPRVATSRIDLARL 117
            QGKY ++E  Y+RAL I E VLGPDHP VAT+  +LA L
Sbjct:    4 QGKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLAGL 42          
BLAST of mRNA_H-elongata_contig117247.1348.1 vs. uniprot
Match: A0A6H5KMK1_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK1_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 4.000e-6
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 1
Query:    1 QGKYNDSEEYYKRALAIFERVLGPDHPRVATSRIDLARLL 120
            QGKY ++E  Y+R+ AI E+VLG +HPRVATS  D A+LL
Sbjct:   14 QGKYTEAEPLYERSQAIREKVLGSEHPRVATSLNDRAKLL 53          
BLAST of mRNA_H-elongata_contig117247.1348.1 vs. uniprot
Match: UPI0013D05A06 (tetratricopeptide repeat-containing protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D05A06)

HSP 1 Score: 50.4 bits (119), Expect = 8.640e-6
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 1
Query:    1 QGKYNDSEEYYKRALAIFERVLGPDHPRVATSRIDLARL 117
            QGKY ++E  Y+RAL I E VLGPDHP VAT+  +LA L
Sbjct:    4 QGKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLAGL 42          
BLAST of mRNA_H-elongata_contig117247.1348.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 1.070e-5
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 1
Query:    1 QGKYNDSEEYYKRALAIFERVLGPDHPRVATSRIDLARLL 120
            QGKY ++E  Y+R+LAI E+VLGP+HP VATS  + A LL
Sbjct:  693 QGKYAEAEPLYERSLAIQEKVLGPEHPDVATSLDNRASLL 732          
BLAST of mRNA_H-elongata_contig117247.1348.1 vs. uniprot
Match: A0A0T6AUA5_9SCAR (Kinesin light chain n=1 Tax=Oryctes borbonicus TaxID=1629725 RepID=A0A0T6AUA5_9SCAR)

HSP 1 Score: 49.7 bits (117), Expect = 1.860e-5
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 1
Query:    1 QGKYNDSEEYYKRALAIFERVLGPDHPRVATSRIDLA 111
            QGKY + E YY+RAL I+E+ LGPD P VA ++ +LA
Sbjct:   33 QGKYEEVERYYQRALEIYEQTLGPDDPNVAKTKNNLA 69          
BLAST of mRNA_H-elongata_contig117247.1348.1 vs. uniprot
Match: X0XF05_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0XF05_9ZZZZ)

HSP 1 Score: 48.9 bits (115), Expect = 3.170e-5
Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 1
Query:    4 GKYNDSEEYYKRALAIFERVLGPDHPRVATSRIDLARL 117
            G Y+ +E  YKRALAI E+ LGP+HP VATS  +LA L
Sbjct:    9 GDYSKAEPLYKRALAIMEKALGPEHPDVATSLNNLALL 46          
BLAST of mRNA_H-elongata_contig117247.1348.1 vs. uniprot
Match: A0A2P8YJA6_BLAGE (Kinesin light chain n=4 Tax=Neoptera TaxID=33340 RepID=A0A2P8YJA6_BLAGE)

HSP 1 Score: 48.1 bits (113), Expect = 6.900e-5
Identity = 21/37 (56.76%), Postives = 27/37 (72.97%), Query Frame = 1
Query:    1 QGKYNDSEEYYKRALAIFERVLGPDHPRVATSRIDLA 111
            QGKY + E YY+RAL I+E  LGPD P VA ++ +LA
Sbjct:  396 QGKYEEVERYYQRALEIYESKLGPDDPNVAKTKNNLA 432          
BLAST of mRNA_H-elongata_contig117247.1348.1 vs. uniprot
Match: A0A6H5K3K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3K8_9PHAE)

HSP 1 Score: 45.1 bits (105), Expect = 8.570e-5
Identity = 22/44 (50.00%), Postives = 31/44 (70.45%), Query Frame = 1
Query:    1 QGKYNDSEEYYKRALAIFERVLGPDHPRVATSRIDLARLLHAKV 132
            QGKY ++E  Y+R+ AI E+VLG +HP VA+S  +   LL A+V
Sbjct:   18 QGKYMEAEPLYERSQAIQEKVLGLEHPDVASSLNNRVELLRAQV 61          
BLAST of mRNA_H-elongata_contig117247.1348.1 vs. uniprot
Match: D8LPW2_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPW2_ECTSI)

HSP 1 Score: 46.6 bits (109), Expect = 9.090e-5
Identity = 20/39 (51.28%), Postives = 28/39 (71.79%), Query Frame = 1
Query:    1 QGKYNDSEEYYKRALAIFERVLGPDHPRVATSRIDLARL 117
            QGKY++ +  Y RA+ I E+ LGPDHP +ATS  + AR+
Sbjct:   50 QGKYDEGDPLYLRAIEIGEKTLGPDHPALATSLNNRARM 88          
BLAST of mRNA_H-elongata_contig117247.1348.1 vs. uniprot
Match: UPI001F201F05 (tetratricopeptide repeat protein n=1 Tax=Hapalosiphon sp. MRB220 TaxID=1704290 RepID=UPI001F201F05)

HSP 1 Score: 44.7 bits (104), Expect = 9.150e-5
Identity = 18/39 (46.15%), Postives = 30/39 (76.92%), Query Frame = 1
Query:    1 QGKYNDSEEYYKRALAIFERVLGPDHPRVATSRIDLARL 117
            QG+Y+++E  YK+A  +++R+LG +HP VA+S  +LA L
Sbjct:    3 QGRYSEAESLYKKAFELWQRLLGEEHPSVASSYNNLALL 41          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117247.1348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
UPI0013D295288.390e-761.54tetratricopeptide repeat protein n=1 Tax=Desulfoba... [more]
A0A6H5KMK1_9PHAE4.000e-660.00Integrase catalytic domain-containing protein (Fra... [more]
UPI0013D05A068.640e-661.54tetratricopeptide repeat-containing protein n=1 Ta... [more]
D7G722_ECTSI1.070e-560.00NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A0T6AUA5_9SCAR1.860e-556.76Kinesin light chain n=1 Tax=Oryctes borbonicus Tax... [more]
X0XF05_9ZZZZ3.170e-560.53Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A2P8YJA6_BLAGE6.900e-556.76Kinesin light chain n=4 Tax=Neoptera TaxID=33340 R... [more]
A0A6H5K3K8_9PHAE8.570e-550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPW2_ECTSI9.090e-551.28TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
UPI001F201F059.150e-546.15tetratricopeptide repeat protein n=1 Tax=Hapalosip... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117247contigH-elongata_contig117247:1406..1579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929682.966245-CDS-H-elongata_contig117247:1405..15791622929682.966245-CDS-H-elongata_contig117247:1405..1579Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117247 1406..1579 -
1691679117.8966742-CDS-H-elongata_contig117247:1405..15791691679117.8966742-CDS-H-elongata_contig117247:1405..1579Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117247 1406..1579 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117247.1348.1prot_H-elongata_contig117247.1348.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig117247 1406..1579 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig117247.1348.1

>prot_H-elongata_contig117247.1348.1 ID=prot_H-elongata_contig117247.1348.1|Name=mRNA_H-elongata_contig117247.1348.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
QGKYNDSEEYYKRALAIFERVLGPDHPRVATSRIDLARLLHAKVVLSRQL
TMHGLLL*
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mRNA from alignment at H-elongata_contig117247:1406..1579-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig117247.1348.1 ID=mRNA_H-elongata_contig117247.1348.1|Name=mRNA_H-elongata_contig117247.1348.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig117247:1406..1579- (Himanthalia elongata Himel1 dioecious)
CAGGGTAAGTATAACGACTCTGAGGAATATTACAAGCGTGCCCTCGCCAT CTTCGAACGAGTACTTGGTCCTGACCACCCACGGGTCGCGACAAGTCGGA TTGACCTGGCGAGGTTGTTGCATGCTAAGGTGGTACTCTCCAGGCAACTA ACAATGCACGGATTATTGCTCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig117247:1406..1579-

>mRNA_H-elongata_contig117247.1348.1 ID=mRNA_H-elongata_contig117247.1348.1|Name=mRNA_H-elongata_contig117247.1348.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig117247:1406..1579- (Himanthalia elongata Himel1 dioecious)
CAGGGTAAGTATAACGACTCTGAGGAATATTACAAGCGTGCCCTCGCCAT
CTTCGAACGAGTACTTGGTCCTGACCACCCACGGGTCGCGACAAGTCGGA
TTGACCTGGCGAGGTTGTTGCATGCTAAGGTGGTACTCTCCAGGCAACTA
ACAATGCACGGATTATTGCTCTAGCAGGGTAAGTATAACGACTCTGAGGA
ATATTACAAGCGTGCCCTCGCCATCTTCGAACGAGTACTTGGTCCTGACC
ACCCACGGGTCGCGACAAGTCGGATTGACCTGGCGAGGTTGTTGCATGCT
AAGGTGGTACTCTCCAGGCAACTAACAATGCACGGATTATTGCTCTAG
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