mRNA_H-elongata_contig117247.1348.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig117247.1348.1 vs. uniprot
Match: UPI0013D29528 (tetratricopeptide repeat protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D29528) HSP 1 Score: 50.4 bits (119), Expect = 8.390e-7 Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 1
Query: 1 QGKYNDSEEYYKRALAIFERVLGPDHPRVATSRIDLARL 117
QGKY ++E Y+RAL I E VLGPDHP VAT+ +LA L
Sbjct: 4 QGKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLAGL 42
BLAST of mRNA_H-elongata_contig117247.1348.1 vs. uniprot
Match: A0A6H5KMK1_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK1_9PHAE) HSP 1 Score: 51.6 bits (122), Expect = 4.000e-6 Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 1
Query: 1 QGKYNDSEEYYKRALAIFERVLGPDHPRVATSRIDLARLL 120
QGKY ++E Y+R+ AI E+VLG +HPRVATS D A+LL
Sbjct: 14 QGKYTEAEPLYERSQAIREKVLGSEHPRVATSLNDRAKLL 53
BLAST of mRNA_H-elongata_contig117247.1348.1 vs. uniprot
Match: UPI0013D05A06 (tetratricopeptide repeat-containing protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D05A06) HSP 1 Score: 50.4 bits (119), Expect = 8.640e-6 Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 1
Query: 1 QGKYNDSEEYYKRALAIFERVLGPDHPRVATSRIDLARL 117
QGKY ++E Y+RAL I E VLGPDHP VAT+ +LA L
Sbjct: 4 QGKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLAGL 42
BLAST of mRNA_H-elongata_contig117247.1348.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI) HSP 1 Score: 50.4 bits (119), Expect = 1.070e-5 Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 1
Query: 1 QGKYNDSEEYYKRALAIFERVLGPDHPRVATSRIDLARLL 120
QGKY ++E Y+R+LAI E+VLGP+HP VATS + A LL
Sbjct: 693 QGKYAEAEPLYERSLAIQEKVLGPEHPDVATSLDNRASLL 732
BLAST of mRNA_H-elongata_contig117247.1348.1 vs. uniprot
Match: A0A0T6AUA5_9SCAR (Kinesin light chain n=1 Tax=Oryctes borbonicus TaxID=1629725 RepID=A0A0T6AUA5_9SCAR) HSP 1 Score: 49.7 bits (117), Expect = 1.860e-5 Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 1
Query: 1 QGKYNDSEEYYKRALAIFERVLGPDHPRVATSRIDLA 111
QGKY + E YY+RAL I+E+ LGPD P VA ++ +LA
Sbjct: 33 QGKYEEVERYYQRALEIYEQTLGPDDPNVAKTKNNLA 69
BLAST of mRNA_H-elongata_contig117247.1348.1 vs. uniprot
Match: X0XF05_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0XF05_9ZZZZ) HSP 1 Score: 48.9 bits (115), Expect = 3.170e-5 Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 1
Query: 4 GKYNDSEEYYKRALAIFERVLGPDHPRVATSRIDLARL 117
G Y+ +E YKRALAI E+ LGP+HP VATS +LA L
Sbjct: 9 GDYSKAEPLYKRALAIMEKALGPEHPDVATSLNNLALL 46
BLAST of mRNA_H-elongata_contig117247.1348.1 vs. uniprot
Match: A0A2P8YJA6_BLAGE (Kinesin light chain n=4 Tax=Neoptera TaxID=33340 RepID=A0A2P8YJA6_BLAGE) HSP 1 Score: 48.1 bits (113), Expect = 6.900e-5 Identity = 21/37 (56.76%), Postives = 27/37 (72.97%), Query Frame = 1
Query: 1 QGKYNDSEEYYKRALAIFERVLGPDHPRVATSRIDLA 111
QGKY + E YY+RAL I+E LGPD P VA ++ +LA
Sbjct: 396 QGKYEEVERYYQRALEIYESKLGPDDPNVAKTKNNLA 432
BLAST of mRNA_H-elongata_contig117247.1348.1 vs. uniprot
Match: A0A6H5K3K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3K8_9PHAE) HSP 1 Score: 45.1 bits (105), Expect = 8.570e-5 Identity = 22/44 (50.00%), Postives = 31/44 (70.45%), Query Frame = 1
Query: 1 QGKYNDSEEYYKRALAIFERVLGPDHPRVATSRIDLARLLHAKV 132
QGKY ++E Y+R+ AI E+VLG +HP VA+S + LL A+V
Sbjct: 18 QGKYMEAEPLYERSQAIQEKVLGLEHPDVASSLNNRVELLRAQV 61
BLAST of mRNA_H-elongata_contig117247.1348.1 vs. uniprot
Match: D8LPW2_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPW2_ECTSI) HSP 1 Score: 46.6 bits (109), Expect = 9.090e-5 Identity = 20/39 (51.28%), Postives = 28/39 (71.79%), Query Frame = 1
Query: 1 QGKYNDSEEYYKRALAIFERVLGPDHPRVATSRIDLARL 117
QGKY++ + Y RA+ I E+ LGPDHP +ATS + AR+
Sbjct: 50 QGKYDEGDPLYLRAIEIGEKTLGPDHPALATSLNNRARM 88
BLAST of mRNA_H-elongata_contig117247.1348.1 vs. uniprot
Match: UPI001F201F05 (tetratricopeptide repeat protein n=1 Tax=Hapalosiphon sp. MRB220 TaxID=1704290 RepID=UPI001F201F05) HSP 1 Score: 44.7 bits (104), Expect = 9.150e-5 Identity = 18/39 (46.15%), Postives = 30/39 (76.92%), Query Frame = 1
Query: 1 QGKYNDSEEYYKRALAIFERVLGPDHPRVATSRIDLARL 117
QG+Y+++E YK+A +++R+LG +HP VA+S +LA L
Sbjct: 3 QGRYSEAESLYKKAFELWQRLLGEEHPSVASSYNNLALL 41 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117247.1348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig117247.1348.1 >prot_H-elongata_contig117247.1348.1 ID=prot_H-elongata_contig117247.1348.1|Name=mRNA_H-elongata_contig117247.1348.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp QGKYNDSEEYYKRALAIFERVLGPDHPRVATSRIDLARLLHAKVVLSRQLback to top mRNA from alignment at H-elongata_contig117247:1406..1579- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig117247.1348.1 ID=mRNA_H-elongata_contig117247.1348.1|Name=mRNA_H-elongata_contig117247.1348.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig117247:1406..1579- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig117247:1406..1579- >mRNA_H-elongata_contig117247.1348.1 ID=mRNA_H-elongata_contig117247.1348.1|Name=mRNA_H-elongata_contig117247.1348.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig117247:1406..1579- (Himanthalia elongata Himel1 dioecious)back to top |