mRNA_H-elongata_contig11720.1345.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig11720.1345.1 vs. uniprot
Match: A0A6H5JW46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW46_9PHAE) HSP 1 Score: 179 bits (453), Expect = 1.310e-49 Identity = 94/188 (50.00%), Postives = 123/188 (65.43%), Query Frame = 1
Query: 1 QVALGGGVFVSALNIPGECRPFGFEKYWLEK--EKAAGRRELRAVSPGMWLMKDTKRTDPQACDKYVNQASVE-GTLFNYQSEHASFQITSPGMSLRVNVGKIHQLAQRDPTDKYNLPDHEAYQMNIGFENIEVSNKSQGILGETVIPKVDEAGVPIMKGPDCIRGKEDDYIVASPLEKTFLLEAHEL 555
VAL GV V+A+N+PGECR FGFE YW K E A R L S G WL+ D T+ C +YV QA + G LF QSEHASFQI +P ++R++ G++HQ+A RDPT++++LPDH +QMN+G ++ EVS + GILGET P D G IM G + IRG E+DY VA PL+ TF ++ EL
Sbjct: 198 SVALADGVIVTAVNLPGECRSFGFEHYWERKKLENARHGRHLGEQSMGDWLLGDPTATNMDECMEYVAQAEGQAGGLFALQSEHASFQIVTPTATVRLSHGRLHQIATRDPTNRFDLPDHTTWQMNMGIDHNEVSYSATGILGETSTPTKDAYGQDIMTGMEAIRGSEEDYRVAGPLDVTFPMDTLEL 385
BLAST of mRNA_H-elongata_contig11720.1345.1 vs. uniprot
Match: A0A6H5L5Y7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Y7_9PHAE) HSP 1 Score: 170 bits (430), Expect = 9.390e-47 Identity = 86/170 (50.59%), Postives = 119/170 (70.00%), Query Frame = 1
Query: 4 VALGGGVFVSALNIPGECRPFGFEKYWLEK--EKAAGRRELRAV-SPGMWLMKDTKRTDPQACDKYVNQASVE-GTLFNYQSEHASFQITSPGMSLRVNVGKIHQLAQRDPTDKYNLPDHEAYQMNIGFENIEVSNKSQGILGETVIPKVDEAGVPIMKGPDCIRGKEDD 501
V+LG GV +SA+N+PG CR FGFEKYW K E A G R+LR S G W++ D T+ C +YV +A E G +F +QSEHASFQI +P ++R++ G++HQ+A RDPTD+Y+LPDH +QMN+ ++ +VS ++GILGET +P D +G PIM G + IRG E+D
Sbjct: 130 VSLGLGVEISAVNLPGACRSFGFEKYWEHKKLEYATGGRQLRTQPSMGEWILGDPTATNMDECVEYVARAEAEEGGMFAHQSEHASFQIVTPAATVRLSHGRLHQIAMRDPTDQYDLPDHLTWQMNLAVDHNQVSYAAKGILGETFVPTRDASGKPIMTGMEAIRGTEED 299
BLAST of mRNA_H-elongata_contig11720.1345.1 vs. uniprot
Match: A0A6H5K7V7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7V7_9PHAE) HSP 1 Score: 170 bits (431), Expect = 7.520e-46 Identity = 84/187 (44.92%), Postives = 124/187 (66.31%), Query Frame = 1
Query: 1 QVALGGGVFVSALNIPGECRPFGFEKYWLEKEK---AAGRR---ELRAVSPGMWLMKDTKRTDPQACDKYVNQASVEGT--LFNYQSEHASFQITSPGMSLRVNVGKIHQLAQRDPTDKYNLPDHEAYQMNIGFENIEVSNKSQGILGETVIPKVDEAGVPIMKGPDCIRGKEDDYIVASPLEKTFL 537
+ LG GV +SA+N+PG CR FGFEKYW K+ A+GRR +L+ W++ D T+ C +YV A+V+G LF Y SEH SFQI +P ++R++ G++HQLA RDPTD++++PDH +QMN+ F+N++++ + GILGET +D G PIM+G IRG ++DY+V PL+ F+
Sbjct: 248 EAELGPGVAISAVNLPGACRSFGFEKYWERKKAEYVASGRRLNNDLQMQEMSDWILGDPTATNMAECTEYVLGATVDGQAGLFEYDSEHTSFQIVTPKGTIRLSHGRLHQLAMRDPTDRFDIPDHLTWQMNLAFDNVDLAVDATGILGETQQHTLDANGNPIMEGMAAIRGSQEDYLVDGPLDNVFV 434
BLAST of mRNA_H-elongata_contig11720.1345.1 vs. uniprot
Match: A0A6H5KVF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF3_9PHAE) HSP 1 Score: 170 bits (431), Expect = 1.290e-44 Identity = 89/186 (47.85%), Postives = 121/186 (65.05%), Query Frame = 1
Query: 4 VALGGGVFVSALNIPGECRPFGFEKYWLEK--EKAAGRRELRAV-SPGMWLMKDTKRTDPQACDKYVNQASVE-GTLFNYQSEHASFQITSPGMSLRVNVGKIHQLAQRDPTDKYNLPDHEAYQMNIGFENIEVSNKSQGILGETVIPKVDEAGVPIMKGPDCIRGKEDDYIVASPLEKTFLLEAH 549
VALG V VSA N+PG CR FGFEKYW K E A R LR S G W++ D T+ C +YV +A E G +F +QSEH SFQI +P ++R++ G++HQ+A RDPTD+++LPDH +QMN+ + +VS+ ++GILG+T +P D G PIM G + IRG E+DY V L F+ +AH
Sbjct: 427 VALGADVEVSAANLPGACRSFGFEKYWERKKLENARAGRLLRTTPSMGEWILGDPTATNMNECVEYVARAEAEEGGVFAHQSEHVSFQIVTPKATVRLSHGRLHQIAMRDPTDRFDLPDHLTWQMNMAIHHEDVSHAAKGILGQTFVPTRDADGKPIMTGLEAIRGSEEDYRVDGALGVDFVQDAH 612
BLAST of mRNA_H-elongata_contig11720.1345.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE) HSP 1 Score: 149 bits (375), Expect = 3.070e-36 Identity = 81/186 (43.55%), Postives = 112/186 (60.22%), Query Frame = 1
Query: 4 VALGGGVFVSALNIPGECRPFGFEKYW----LEKEKAAGRRELRAVSPGMWLMKDTKRTDPQACDKYVNQ---ASVEGTLFNYQSEHASFQITSPGMSLRVNVGKIHQLAQRDPTDKYNLPDHEAYQMNIGFENIEVSNKSQGILGETVIPKVDEAGVPIMKGPDCIRGKEDDYIVASPLEKTFLL 540
V L V VSA+NIPG CR FGFEKYW LE +A GRR S G W++ D T+ C +YV + +G LF +QSEHASFQI +P +R++ G++HQ+AQ + LPDH +QMN+ ++ +VS ++G+LGET++P +G IM G + IRG ++DY V PL F L
Sbjct: 890 VELASDVMVSAVNIPGACRSFGFEKYWERKKLEYAQAGGRRLSVQQSMGEWILGDPTATNMAECTEYVARHIAGGEDGDLFTHQSEHASFQIVTPAAIIRLSHGRLHQIAQ------FGLPDHMTWQMNLAVDHNDVSLNAKGVLGETMVPTRTVSGEYIMHGMEAIRGTQEDYHVEGPLGLDFTL 1069
BLAST of mRNA_H-elongata_contig11720.1345.1 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE) HSP 1 Score: 144 bits (362), Expect = 1.490e-34 Identity = 82/186 (44.09%), Postives = 112/186 (60.22%), Query Frame = 1
Query: 4 VALGGGVFVSALNIPGECRPFGFEKYW----LEKEKAAGRRELRAVSPGMWLMKDTKRTDPQACDKYVNQ---ASVEGTLFNYQSEHASFQITSPGMSLRVNVGKIHQLAQRDPTDKYNLPDHEAYQMNIGFENIEVSNKSQGILGETVIPKVDEAGVPIMKGPDCIRGKEDDYIVASPLEKTFLL 540
V L V VSA+NIPG CR FGFEKYW LE +A GR L S G W++ D T+ + C +YV + SV+G LF +QSEH SFQI +P +R++ G+ HQ+A+ LPDH +QMN+ ++ +VS ++G+LGET+IP +G +M G + IRG E+DY V PL F L
Sbjct: 708 VELAPDVKVSAVNIPGACRSFGFEKYWERKKLEYAQAGGRGLLTEQSMGEWILGDPTATNVEECTEYVARHVAGSVDGDLFAHQSEHTSFQIVTPTAVVRLSHGRRHQIAE------LGLPDHVTWQMNLAVDHNDVSLSAKGVLGETLIPTRAASGEYVMHGMEAIRGTEEDYHVDGPLGLGFNL 887
BLAST of mRNA_H-elongata_contig11720.1345.1 vs. uniprot
Match: A0A6H5JNZ2_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNZ2_9PHAE) HSP 1 Score: 113 bits (282), Expect = 4.610e-24 Identity = 68/179 (37.99%), Postives = 96/179 (53.63%), Query Frame = 1
Query: 10 LGGGVFVSALNIPGECRPFGFEKYWLEKEKAA-GRRELRAVSPGMWLMKDTKRTDPQACDKYVNQASVEGTLFNYQSEHASFQITSPGMSLRVNVGKIHQLAQRDPTDKYNLPDHEAYQMNIGFENIEVSNKS-QGILGETVIPKVDEAGVPIMKGPDCIRGKEDDYIVASPLEKTFLL 540
L GG+ VSA N+P +C FG K W +A RR+LRA S W++ T C +Y+++ + G QS HA +QI +P + +R+NVG HQ D LPD + +QM++G + + N++ GILGET P DE G +M G D RG +DY V+ PL F L
Sbjct: 518 LPGGIEVSADNLPVQCWQFGGHKIWARHYEAILARRKLRAQSFEDWVLSFTDMAAHDWCTEYISEKGLTGV----QSSHAIYQIVTPAVVVRLNVGIGHQDGDEVDWDGRVLPDLDVWQMDVGLTGLSLENEALTGILGETARPVYDEDGHAVMAGDDAYRGTPEDYRVSGPLGMDFAL 692
BLAST of mRNA_H-elongata_contig11720.1345.1 vs. uniprot
Match: A0A6H5L2W0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W0_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 1.670e-20 Identity = 63/177 (35.59%), Postives = 92/177 (51.98%), Query Frame = 1
Query: 1 QVALGGGVFVSALNIPGECRPFGFEKYWLEKEKA---AGRR-----ELRAVSPGMWLMKDTKRTDPQACDKYVNQASVEGT--LFNYQSEHASFQITSPGMSLRVNVGKIHQLAQRDPTDKYNLPDHEAYQMNIGFENIEVSNKSQGILGETVIPKVDEAGVPIMKGPDCIRGKEDD 501
+V G V +SA+N+PG CR FGFE+YW K++ GRR +++A+S W++ D T+ C +YV +A+ G LF + EH SFQI +P ++R + MN+ + I+VS + GILGET P +D G PIM+G IRG +DD
Sbjct: 106 EVLFGPQVAISAVNLPGACRSFGFEEYWERKKQEYARGGRRLPSSTQMQAMSD--WILGDPTATNMAECTEYVVEATRNGLGGLFEHDLEHTSFQILTPMGTIRRAMAAFTSFPC----------------MNLAIDRIDVSPNATGILGETQKPTLDANGSPIMQGMASIRGAQDD 264
BLAST of mRNA_H-elongata_contig11720.1345.1 vs. uniprot
Match: A0A6H5JP35_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP35_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 4.420e-16 Identity = 59/181 (32.60%), Postives = 88/181 (48.62%), Query Frame = 1
Query: 10 LGGGVFVSALNIPGECRPFGFEKYWLEKEKAA---GRRELRAVSPGMWLMKDTKRTDPQACDKYVNQASVEGTLFNYQSEHASFQITSPGMSLRVNVGKIHQLAQRDPTDKYNLPDHEAYQMNIGFENIEVSNKS-QGILGETVIPKVDEAGVPIMKGPDCIRGKEDDYIVASPLEKTFLL 540
L GG+ VSA N+P +C FG +K GRR L + + W++ C +Y+ L + QS A +QI +P + +R NVG HQ D +PD + ++M++G + + N++ GILGET P +DE G +MKG RG +DY V+ L F L
Sbjct: 172 LPGGIQVSAANLPVQCWQFGGDKISARHYANTIMEGRRHLLSETFEEWVLSFQHMAAHDWCTEYI----AHKDLSDVQSAQAIYQIITPEVVVRFNVGIGHQTGGHVEMDGRIVPDLDVWEMDVGLAGLSLENETLTGILGETARPVLDEHGRAVMKGNKAYRGTPEDYRVSGALGTDFAL 348 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11720.1345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11720.1345.1 >prot_H-elongata_contig11720.1345.1 ID=prot_H-elongata_contig11720.1345.1|Name=mRNA_H-elongata_contig11720.1345.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp MWLMKDTKRTDPQACDKYVNQASVEGTLFNYQSEHASFQITSPGMSLRVNback to top mRNA from alignment at H-elongata_contig11720:1987..3316- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig11720.1345.1 ID=mRNA_H-elongata_contig11720.1345.1|Name=mRNA_H-elongata_contig11720.1345.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1330bp|location=Sequence derived from alignment at H-elongata_contig11720:1987..3316- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig11720:1987..3316- >mRNA_H-elongata_contig11720.1345.1 ID=mRNA_H-elongata_contig11720.1345.1|Name=mRNA_H-elongata_contig11720.1345.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig11720:1987..3316- (Himanthalia elongata Himel1 dioecious)back to top |