mRNA_H-elongata_contig116887.1319.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig116887.1319.1 vs. uniprot
Match: D8LK86_ECTSI (Harp (Smarcal1)-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK86_ECTSI) HSP 1 Score: 149 bits (377), Expect = 9.190e-40 Identity = 74/95 (77.89%), Postives = 82/95 (86.32%), Query Frame = 1
Query: 10 GDEMGLGKTLQALAVACAYREDWPILVVAPSSLRANWRNEASKWVPGLAKENIQIVKDAKDRVRDSALMVIVSYDLATRMAGKALLREGQVSSLV 294
GDEMGLGKTLQALAVACAYREDWP+LVVAPSSL+ NWRNEA KWVPGL KE IQIV+DAK VRDSA +VIVSYDLATRM K+LL +GQ ++
Sbjct: 137 GDEMGLGKTLQALAVACAYREDWPVLVVAPSSLKDNWRNEAMKWVPGLTKEAIQIVRDAKMGVRDSAQLVIVSYDLATRMVEKSLLWKGQFEIVI 231
BLAST of mRNA_H-elongata_contig116887.1319.1 vs. uniprot
Match: A0A7S0M042_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M042_9CRYP) HSP 1 Score: 92.0 bits (227), Expect = 3.820e-22 Identity = 43/88 (48.86%), Postives = 59/88 (67.05%), Query Frame = 1
Query: 10 GDEMGLGKTLQALAVACAYREDWPILVVAPSSLRANWRNEASKWVPGLAKENIQIVKDAKDRVRDSALMVIVSYDLATRMAGKALLRE 273
GDEMGLGKTLQA+AV+ YREDWP+LVVAPS+LR +WR E +W+P L + ++ +V D + D + ++SYDL R + R
Sbjct: 8 GDEMGLGKTLQAIAVSRIYREDWPLLVVAPSALRLSWRQELLRWLPELGEGDVNVVMTGADAL-DGRPVTVISYDLLARRCDAVVARR 94
BLAST of mRNA_H-elongata_contig116887.1319.1 vs. uniprot
Match: L1JAD3_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JAD3_GUITC) HSP 1 Score: 97.1 bits (240), Expect = 1.980e-21 Identity = 46/83 (55.42%), Postives = 61/83 (73.49%), Query Frame = 1
Query: 10 GDEMGLGKTLQALAVACAYREDWPILVVAPSSLRANWRNEASKWVPGLAKE--NIQIVKDAKDRVRDSALMVIVSYDLATRMA 252
GDEMGLGKTLQALAVA AY+ +WP+L++ PSSLR NW E S+W+ G+ +E +Q+V D ++ + IVSYDLATRM+
Sbjct: 38 GDEMGLGKTLQALAVAAAYKREWPLLIICPSSLRLNWAQECSRWLEGMKEEPLEVQVVMKGSDAIK-GVDVTIVSYDLATRMS 119
BLAST of mRNA_H-elongata_contig116887.1319.1 vs. uniprot
Match: A0A7S0Y6Y9_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0Y6Y9_HEMAN) HSP 1 Score: 90.1 bits (222), Expect = 2.320e-21 Identity = 39/82 (47.56%), Postives = 61/82 (74.39%), Query Frame = 1
Query: 13 DEMGLGKTLQALAVACAYREDWPILVVAPSSLRANWRNEASKWVPGLAKENIQIVKDAKDRVRDSALMVIVSYDLATRMAGK 258
DEMGLGKT+QA+AVA +++DWP+LV+APSSLR WR+E +W+P L++ ++ +V KD+V + ++SYDL +++ K
Sbjct: 1 DEMGLGKTIQAIAVARVFKDDWPLLVIAPSSLRLVWRDEILRWLPELSEADLSVVMTGKDKV--GGRITVISYDLCVKLSDK 80
BLAST of mRNA_H-elongata_contig116887.1319.1 vs. uniprot
Match: L8GX54_ACACA (Helicase, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GX54_ACACA) HSP 1 Score: 93.6 bits (231), Expect = 4.510e-20 Identity = 43/83 (51.81%), Postives = 56/83 (67.47%), Query Frame = 1
Query: 13 DEMGLGKTLQALAVACAYREDWPILVVAPSSLRANWRNEASKWVPGLAKENIQIVKDAKDRVRDSALMVIVSYDLATRMAGKA 261
DEMGLGKTLQA+A+A Y+EDWP+LVVAPSS+R W + KW+PGL + I+++ KD L+ I+SYDL R A
Sbjct: 387 DEMGLGKTLQAIAIAAYYKEDWPVLVVAPSSVRVQWADNFEKWIPGLRPDQIKVIMKTKDN--PDGLVNIISYDLVVRQTNIA 467
BLAST of mRNA_H-elongata_contig116887.1319.1 vs. uniprot
Match: A0A7S0Y8J7_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0Y8J7_HEMAN) HSP 1 Score: 87.8 bits (216), Expect = 4.800e-20 Identity = 40/83 (48.19%), Postives = 59/83 (71.08%), Query Frame = 1
Query: 10 GDEMGLGKTLQALAVACAYREDWPILVVAPSSLRANWRNEASKWVPGLAKENIQIVKDAKDRVR--DSALMVIVSYDLATRMA 252
GDEMG GKT+QAL+VA AY ++WP+LV+ P+SLR NW E +W+PG+A+ +++++ A+D D + I SYDL R+A
Sbjct: 13 GDEMGTGKTVQALSVAAAYADEWPMLVLCPASLRLNWAAEVQRWLPGVARGDVRVLFSARDAPPGGDPPRVTIASYDLMPRLA 95
BLAST of mRNA_H-elongata_contig116887.1319.1 vs. uniprot
Match: A0A0V0QLZ2_PSEPJ (p-loop containing nucleoside triphosphate hydrolase n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QLZ2_PSEPJ) HSP 1 Score: 93.2 bits (230), Expect = 6.030e-20 Identity = 37/79 (46.84%), Postives = 59/79 (74.68%), Query Frame = 1
Query: 10 GDEMGLGKTLQALAVACAYREDWPILVVAPSSLRANWRNEASKWVPGLAKENIQIVKDAKDRVRDSALMVIVSYDLATR 246
GDEMG+GKT+Q++A+A Y E WP+LVV+PSSLR NW++E W+P + + +Q++ K++V+ A ++I+SYDL +
Sbjct: 88 GDEMGVGKTIQSIALAYCYYEKWPLLVVSPSSLRLNWKDEILMWLPDIKENQVQVISKGKEQVKKEAKVIIISYDLCVK 166
BLAST of mRNA_H-elongata_contig116887.1319.1 vs. uniprot
Match: A0A7S1PAJ5_9ALVE (Hypothetical protein n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1PAJ5_9ALVE) HSP 1 Score: 93.2 bits (230), Expect = 6.070e-20 Identity = 44/80 (55.00%), Postives = 61/80 (76.25%), Query Frame = 1
Query: 10 GDEMGLGKTLQALAVACAYREDWPILVVAPSSLRANWRNEASKWVPGLAKE-NIQIVKDAKDRVRDSALMVIVSYDLATR 246
GDEMGLGKTLQALAVA Y WP+LV+ PSS+R WR++AS+W+ L +E ++ +VK++K V D A +V++SYDL +R
Sbjct: 187 GDEMGLGKTLQALAVAAFYSNQWPLLVICPSSIRFQWRDQASQWLKHLVRECDVCLVKNSKTVVPDDAKIVVISYDLISR 266
BLAST of mRNA_H-elongata_contig116887.1319.1 vs. uniprot
Match: A0A0G4G8G3_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G8G3_VITBC) HSP 1 Score: 93.2 bits (230), Expect = 6.200e-20 Identity = 44/80 (55.00%), Postives = 61/80 (76.25%), Query Frame = 1
Query: 10 GDEMGLGKTLQALAVACAYREDWPILVVAPSSLRANWRNEASKWVPGLAKE-NIQIVKDAKDRVRDSALMVIVSYDLATR 246
GDEMGLGKTLQALAVA Y WP+LV+ PSS+R WR++AS+W+ L +E ++ +VK++K V D A +V++SYDL +R
Sbjct: 380 GDEMGLGKTLQALAVAAFYSNQWPLLVICPSSIRFQWRDQASQWLKHLVRECDVCLVKNSKTVVPDDAKIVVISYDLISR 459
BLAST of mRNA_H-elongata_contig116887.1319.1 vs. uniprot
Match: A0A7S2AMH0_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2AMH0_9DINO) HSP 1 Score: 91.7 bits (226), Expect = 9.160e-20 Identity = 49/93 (52.69%), Postives = 61/93 (65.59%), Query Frame = 1
Query: 1 CSAGDEMGLGKTLQALAVACAYREDWPILVVAPSSLRANWRNEASKWVPGLAK-ENIQIVKDAKDRVRDSALMVIVSYDL-ATRMA-GKALLR 270
C GDEMGLGKTLQALA+A Y EDWP+LVV PSSLR W+ +A +W+PGL + +Q++K D A I+SY L AT M GK + R
Sbjct: 14 CLIGDEMGLGKTLQALALAAQYTEDWPVLVVCPSSLRWVWKEQAEEWLPGLVHGDEVQVIKKGSDSFNPKAAFWIISYGLLATDMKKGKFMQR 106 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116887.1319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig116887.1319.1 >prot_H-elongata_contig116887.1319.1 ID=prot_H-elongata_contig116887.1319.1|Name=mRNA_H-elongata_contig116887.1319.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp MGLGKTLQALAVACAYREDWPILVVAPSSLRANWRNEASKWVPGLAKENIback to top mRNA from alignment at H-elongata_contig116887:153..840+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig116887.1319.1 ID=mRNA_H-elongata_contig116887.1319.1|Name=mRNA_H-elongata_contig116887.1319.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=688bp|location=Sequence derived from alignment at H-elongata_contig116887:153..840+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig116887:153..840+ >mRNA_H-elongata_contig116887.1319.1 ID=mRNA_H-elongata_contig116887.1319.1|Name=mRNA_H-elongata_contig116887.1319.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig116887:153..840+ (Himanthalia elongata Himel1 dioecious)back to top |