mRNA_H-elongata_contig116887.1319.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig116887.1319.1
Unique NamemRNA_H-elongata_contig116887.1319.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig116887.1319.1 vs. uniprot
Match: D8LK86_ECTSI (Harp (Smarcal1)-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK86_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 9.190e-40
Identity = 74/95 (77.89%), Postives = 82/95 (86.32%), Query Frame = 1
Query:   10 GDEMGLGKTLQALAVACAYREDWPILVVAPSSLRANWRNEASKWVPGLAKENIQIVKDAKDRVRDSALMVIVSYDLATRMAGKALLREGQVSSLV 294
            GDEMGLGKTLQALAVACAYREDWP+LVVAPSSL+ NWRNEA KWVPGL KE IQIV+DAK  VRDSA +VIVSYDLATRM  K+LL +GQ   ++
Sbjct:  137 GDEMGLGKTLQALAVACAYREDWPVLVVAPSSLKDNWRNEAMKWVPGLTKEAIQIVRDAKMGVRDSAQLVIVSYDLATRMVEKSLLWKGQFEIVI 231          
BLAST of mRNA_H-elongata_contig116887.1319.1 vs. uniprot
Match: A0A7S0M042_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M042_9CRYP)

HSP 1 Score: 92.0 bits (227), Expect = 3.820e-22
Identity = 43/88 (48.86%), Postives = 59/88 (67.05%), Query Frame = 1
Query:   10 GDEMGLGKTLQALAVACAYREDWPILVVAPSSLRANWRNEASKWVPGLAKENIQIVKDAKDRVRDSALMVIVSYDLATRMAGKALLRE 273
            GDEMGLGKTLQA+AV+  YREDWP+LVVAPS+LR +WR E  +W+P L + ++ +V    D + D   + ++SYDL  R     + R 
Sbjct:    8 GDEMGLGKTLQAIAVSRIYREDWPLLVVAPSALRLSWRQELLRWLPELGEGDVNVVMTGADAL-DGRPVTVISYDLLARRCDAVVARR 94          
BLAST of mRNA_H-elongata_contig116887.1319.1 vs. uniprot
Match: L1JAD3_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JAD3_GUITC)

HSP 1 Score: 97.1 bits (240), Expect = 1.980e-21
Identity = 46/83 (55.42%), Postives = 61/83 (73.49%), Query Frame = 1
Query:   10 GDEMGLGKTLQALAVACAYREDWPILVVAPSSLRANWRNEASKWVPGLAKE--NIQIVKDAKDRVRDSALMVIVSYDLATRMA 252
            GDEMGLGKTLQALAVA AY+ +WP+L++ PSSLR NW  E S+W+ G+ +E   +Q+V    D ++    + IVSYDLATRM+
Sbjct:   38 GDEMGLGKTLQALAVAAAYKREWPLLIICPSSLRLNWAQECSRWLEGMKEEPLEVQVVMKGSDAIK-GVDVTIVSYDLATRMS 119          
BLAST of mRNA_H-elongata_contig116887.1319.1 vs. uniprot
Match: A0A7S0Y6Y9_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0Y6Y9_HEMAN)

HSP 1 Score: 90.1 bits (222), Expect = 2.320e-21
Identity = 39/82 (47.56%), Postives = 61/82 (74.39%), Query Frame = 1
Query:   13 DEMGLGKTLQALAVACAYREDWPILVVAPSSLRANWRNEASKWVPGLAKENIQIVKDAKDRVRDSALMVIVSYDLATRMAGK 258
            DEMGLGKT+QA+AVA  +++DWP+LV+APSSLR  WR+E  +W+P L++ ++ +V   KD+V     + ++SYDL  +++ K
Sbjct:    1 DEMGLGKTIQAIAVARVFKDDWPLLVIAPSSLRLVWRDEILRWLPELSEADLSVVMTGKDKV--GGRITVISYDLCVKLSDK 80          
BLAST of mRNA_H-elongata_contig116887.1319.1 vs. uniprot
Match: L8GX54_ACACA (Helicase, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GX54_ACACA)

HSP 1 Score: 93.6 bits (231), Expect = 4.510e-20
Identity = 43/83 (51.81%), Postives = 56/83 (67.47%), Query Frame = 1
Query:   13 DEMGLGKTLQALAVACAYREDWPILVVAPSSLRANWRNEASKWVPGLAKENIQIVKDAKDRVRDSALMVIVSYDLATRMAGKA 261
            DEMGLGKTLQA+A+A  Y+EDWP+LVVAPSS+R  W +   KW+PGL  + I+++   KD      L+ I+SYDL  R    A
Sbjct:  387 DEMGLGKTLQAIAIAAYYKEDWPVLVVAPSSVRVQWADNFEKWIPGLRPDQIKVIMKTKDN--PDGLVNIISYDLVVRQTNIA 467          
BLAST of mRNA_H-elongata_contig116887.1319.1 vs. uniprot
Match: A0A7S0Y8J7_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0Y8J7_HEMAN)

HSP 1 Score: 87.8 bits (216), Expect = 4.800e-20
Identity = 40/83 (48.19%), Postives = 59/83 (71.08%), Query Frame = 1
Query:   10 GDEMGLGKTLQALAVACAYREDWPILVVAPSSLRANWRNEASKWVPGLAKENIQIVKDAKDRVR--DSALMVIVSYDLATRMA 252
            GDEMG GKT+QAL+VA AY ++WP+LV+ P+SLR NW  E  +W+PG+A+ +++++  A+D     D   + I SYDL  R+A
Sbjct:   13 GDEMGTGKTVQALSVAAAYADEWPMLVLCPASLRLNWAAEVQRWLPGVARGDVRVLFSARDAPPGGDPPRVTIASYDLMPRLA 95          
BLAST of mRNA_H-elongata_contig116887.1319.1 vs. uniprot
Match: A0A0V0QLZ2_PSEPJ (p-loop containing nucleoside triphosphate hydrolase n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QLZ2_PSEPJ)

HSP 1 Score: 93.2 bits (230), Expect = 6.030e-20
Identity = 37/79 (46.84%), Postives = 59/79 (74.68%), Query Frame = 1
Query:   10 GDEMGLGKTLQALAVACAYREDWPILVVAPSSLRANWRNEASKWVPGLAKENIQIVKDAKDRVRDSALMVIVSYDLATR 246
            GDEMG+GKT+Q++A+A  Y E WP+LVV+PSSLR NW++E   W+P + +  +Q++   K++V+  A ++I+SYDL  +
Sbjct:   88 GDEMGVGKTIQSIALAYCYYEKWPLLVVSPSSLRLNWKDEILMWLPDIKENQVQVISKGKEQVKKEAKVIIISYDLCVK 166          
BLAST of mRNA_H-elongata_contig116887.1319.1 vs. uniprot
Match: A0A7S1PAJ5_9ALVE (Hypothetical protein n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1PAJ5_9ALVE)

HSP 1 Score: 93.2 bits (230), Expect = 6.070e-20
Identity = 44/80 (55.00%), Postives = 61/80 (76.25%), Query Frame = 1
Query:   10 GDEMGLGKTLQALAVACAYREDWPILVVAPSSLRANWRNEASKWVPGLAKE-NIQIVKDAKDRVRDSALMVIVSYDLATR 246
            GDEMGLGKTLQALAVA  Y   WP+LV+ PSS+R  WR++AS+W+  L +E ++ +VK++K  V D A +V++SYDL +R
Sbjct:  187 GDEMGLGKTLQALAVAAFYSNQWPLLVICPSSIRFQWRDQASQWLKHLVRECDVCLVKNSKTVVPDDAKIVVISYDLISR 266          
BLAST of mRNA_H-elongata_contig116887.1319.1 vs. uniprot
Match: A0A0G4G8G3_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G8G3_VITBC)

HSP 1 Score: 93.2 bits (230), Expect = 6.200e-20
Identity = 44/80 (55.00%), Postives = 61/80 (76.25%), Query Frame = 1
Query:   10 GDEMGLGKTLQALAVACAYREDWPILVVAPSSLRANWRNEASKWVPGLAKE-NIQIVKDAKDRVRDSALMVIVSYDLATR 246
            GDEMGLGKTLQALAVA  Y   WP+LV+ PSS+R  WR++AS+W+  L +E ++ +VK++K  V D A +V++SYDL +R
Sbjct:  380 GDEMGLGKTLQALAVAAFYSNQWPLLVICPSSIRFQWRDQASQWLKHLVRECDVCLVKNSKTVVPDDAKIVVISYDLISR 459          
BLAST of mRNA_H-elongata_contig116887.1319.1 vs. uniprot
Match: A0A7S2AMH0_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2AMH0_9DINO)

HSP 1 Score: 91.7 bits (226), Expect = 9.160e-20
Identity = 49/93 (52.69%), Postives = 61/93 (65.59%), Query Frame = 1
Query:    1 CSAGDEMGLGKTLQALAVACAYREDWPILVVAPSSLRANWRNEASKWVPGLAK-ENIQIVKDAKDRVRDSALMVIVSYDL-ATRMA-GKALLR 270
            C  GDEMGLGKTLQALA+A  Y EDWP+LVV PSSLR  W+ +A +W+PGL   + +Q++K   D     A   I+SY L AT M  GK + R
Sbjct:   14 CLIGDEMGLGKTLQALALAAQYTEDWPVLVVCPSSLRWVWKEQAEEWLPGLVHGDEVQVIKKGSDSFNPKAAFWIISYGLLATDMKKGKFMQR 106          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116887.1319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK86_ECTSI9.190e-4077.89Harp (Smarcal1)-related n=1 Tax=Ectocarpus silicul... [more]
A0A7S0M042_9CRYP3.820e-2248.86Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
L1JAD3_GUITC1.980e-2155.42Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
A0A7S0Y6Y9_HEMAN2.320e-2147.56Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
L8GX54_ACACA4.510e-2051.81Helicase, putative n=1 Tax=Acanthamoeba castellani... [more]
A0A7S0Y8J7_HEMAN4.800e-2048.19Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A0V0QLZ2_PSEPJ6.030e-2046.84p-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S1PAJ5_9ALVE6.070e-2055.00Hypothetical protein n=1 Tax=Vitrella brassicaform... [more]
A0A0G4G8G3_VITBC6.200e-2055.00Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S2AMH0_9DINO9.160e-2052.69Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116887contigH-elongata_contig116887:153..840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.8
Seed ortholog evalue2.1e-32
Seed eggNOG ortholog2880.D8LK86
KEGG koko:K14440
EggNOG free text desc.annealing helicase activity
EggNOG OGsCOG0553@1,KOG1000@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size312
Cds size294
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116887.1319.1prot_H-elongata_contig116887.1319.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig116887 171..840 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929679.698647-UTR-H-elongata_contig116887:152..1701622929679.698647-UTR-H-elongata_contig116887:152..170Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig116887 153..170 +
1691679116.8405042-UTR-H-elongata_contig116887:152..1701691679116.8405042-UTR-H-elongata_contig116887:152..170Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig116887 153..170 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929679.7190561-CDS-H-elongata_contig116887:170..3231622929679.7190561-CDS-H-elongata_contig116887:170..323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116887 171..323 +
1691679116.8529942-CDS-H-elongata_contig116887:170..3231691679116.8529942-CDS-H-elongata_contig116887:170..323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116887 171..323 +
1622929679.736355-CDS-H-elongata_contig116887:699..8401622929679.736355-CDS-H-elongata_contig116887:699..840Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116887 700..840 +
1691679116.873125-CDS-H-elongata_contig116887:699..8401691679116.873125-CDS-H-elongata_contig116887:699..840Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116887 700..840 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig116887.1319.1

>prot_H-elongata_contig116887.1319.1 ID=prot_H-elongata_contig116887.1319.1|Name=mRNA_H-elongata_contig116887.1319.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
MGLGKTLQALAVACAYREDWPILVVAPSSLRANWRNEASKWVPGLAKENI
QIVKDAKDRVRDSALMVIVSYDLATRMAGKALLREGQVSSLVGPLCV*
back to top

mRNA from alignment at H-elongata_contig116887:153..840+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig116887.1319.1 ID=mRNA_H-elongata_contig116887.1319.1|Name=mRNA_H-elongata_contig116887.1319.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=688bp|location=Sequence derived from alignment at H-elongata_contig116887:153..840+ (Himanthalia elongata Himel1 dioecious)
TGCTCGGCAGGGGACGAGATGGGCCTGGGGAAAACTCTGCAGGCCTTGGC TGTGGCCTGTGCGTACCGTGAAGACTGGCCGATCCTTGTGGTGGCCCCGT CCAGCCTGAGGGCCAACTGGAGGAACGAGGCGAGCAAGTGGGTGCCGGGG CTGGCAAAAGAGAACATCCAGGTGCGTGCGCGCGCGCGTAGAGGGAGGCC TCCGTTCGAGCTCGGTCCGCGTGGGAGAAACGGCCCCGAAACGGTGCGAT TTATCTTGCGTTGGGCGTAGAGCGAAACGGCTCGTGCCTACACGGTAGAT TATTTTTCGCGTCGCGCTCGTGACAATCGCGTTCGGTAAGGCATGAGGGT GATCGGGTTAAGCGTCGGTGATTACGGTTATACTGGTGTAGCCCAGTCTC CCATCACGTGTTTCTCGTGAGTTTGACGCGTCGCATCTCCCCCCCTCTCC CCTCTCTCGAAGGTTTCCGCAACAGAGCTGCTCGCCGAACGCGTGTTAAT ATATCTCGAATGCTTTGCTCCAACGTATCTTTTGTTGTTGTCGCCAGATC GTGAAGGATGCCAAGGATAGGGTGAGAGACAGCGCACTCATGGTGATCGT TTCGTACGACCTCGCGACCCGCATGGCGGGCAAGGCTCTCCTCCGGGAGG GACAAGTGAGCAGTCTAGTCGGCCCCTTGTGCGTATAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig116887:153..840+

>mRNA_H-elongata_contig116887.1319.1 ID=mRNA_H-elongata_contig116887.1319.1|Name=mRNA_H-elongata_contig116887.1319.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig116887:153..840+ (Himanthalia elongata Himel1 dioecious)
ATGGGCCTGGGGAAAACTCTGCAGGCCTTGGCTGTGGCCTGTGCGTACCG
TGAAGACTGGCCGATCCTTGTGGTGGCCCCGTCCAGCCTGAGGGCCAACT
GGAGGAACGAGGCGAGCAAGTGGGTGCCGGGGCTGGCAAAAGAGAACATC
CAGATGGGCCTGGGGAAAACTCTGCAGGCCTTGGCTGTGGCCTGTGCGTA
CCGTGAAGACTGGCCGATCCTTGTGGTGGCCCCGTCCAGCCTGAGGGCCA
ACTGGAGGAACGAGGCGAGCAAGTGGGTGCCGGGGCTGGCAAAAGAGAAC
ATCCAGATCGTGAAGGATGCCAAGGATAGGGTGAGAGACAGCGCACTCAT
GGTGATCGTTTCGTACGACCTCGCGACCCGCATGGCGGGCAAGGCTCTCC
TCCGGGAGGGACAAGTGAGCAGTCTAGTCGGCCCCTTGTGCGTATAGATC
GTGAAGGATGCCAAGGATAGGGTGAGAGACAGCGCACTCATGGTGATCGT
TTCGTACGACCTCGCGACCCGCATGGCGGGCAAGGCTCTCCTCCGGGAGG
GACAAGTGAGCAGTCTAGTCGGCCCCTTGTGCGTATAG
back to top