mRNA_H-elongata_contig11667.1308.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11667.1308.1
Unique NamemRNA_H-elongata_contig11667.1308.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig11667.1308.1 vs. uniprot
Match: D7FTQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ4_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 5.900e-19
Identity = 49/95 (51.58%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:    1 FNRKKRLSEDECDASL--DYYDVCMADE-ENTDPIVPGPMWERFRPDSELFYHANDEGFSSRGGYHILIDAGGYNSGLNFGYCTLLVMEDIGLIP 276
            F R+ RLS DEC +S   DYYD+C+ADE  N     P   W  FR   E+ Y     G +S  GY +LI+ GG+N GLNFGYCTLLVMED+ +IP
Sbjct:  258 FTRRNRLSSDECSSSSSGDYYDICLADEGTNKTTYSPPQPWASFRQSEEMVY----SGVAS--GYPVLIETGGFNIGLNFGYCTLLVMEDLDVIP 346
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11667.1308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTQ4_ECTSI5.900e-1951.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11667contigH-elongata_contig11667:1883..3928 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionTransient Receptor Potential Channel Fragment
Ec32 orthologEc-06_009250.2
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTransient Receptor Potential Channel
Ec32 orthologEc-06_009240.4
Exons3
Model size277
Cds size276
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11667.1308.1prot_H-elongata_contig11667.1308.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11667 1883..3928 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929678.5475423-CDS-H-elongata_contig11667:1882..19361622929678.5475423-CDS-H-elongata_contig11667:1882..1936Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11667 1883..1936 -
1691679116.4276462-CDS-H-elongata_contig11667:1882..19361691679116.4276462-CDS-H-elongata_contig11667:1882..1936Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11667 1883..1936 -
1622929678.5616214-CDS-H-elongata_contig11667:2494..25621622929678.5616214-CDS-H-elongata_contig11667:2494..2562Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11667 2495..2562 -
1691679116.4363775-CDS-H-elongata_contig11667:2494..25621691679116.4363775-CDS-H-elongata_contig11667:2494..2562Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11667 2495..2562 -
1622929678.5775335-CDS-H-elongata_contig11667:3774..39281622929678.5775335-CDS-H-elongata_contig11667:3774..3928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11667 3775..3928 -
1691679116.4472623-CDS-H-elongata_contig11667:3774..39281691679116.4472623-CDS-H-elongata_contig11667:3774..3928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11667 3775..3928 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11667.1308.1

>prot_H-elongata_contig11667.1308.1 ID=prot_H-elongata_contig11667.1308.1|Name=mRNA_H-elongata_contig11667.1308.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
FNRKKRLSEDECDASLDYYDVCMADEENTDPIVPGPMWERFRPDSELFYH
ANDEGFSSRGGYHILIDAGGYNSGLNFGYCTLLVMEDIGLIP
back to top

mRNA from alignment at H-elongata_contig11667:1883..3928-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11667.1308.1 ID=mRNA_H-elongata_contig11667.1308.1|Name=mRNA_H-elongata_contig11667.1308.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2046bp|location=Sequence derived from alignment at H-elongata_contig11667:1883..3928- (Himanthalia elongata Himel1 dioecious)
TTCAACCGTAAGAAGCGACTGTCCGAAGACGAGTGCGATGCTTCCCTCGA
CTACTACGATGTCTGTATGGCGGACGAAGAAAACACAGACCCGATTGTAC
CGGGCCCTATGTGGGAGCGCTTCAGACCAGATTCTGAGCTCTTTTACCAC
GCCAGTGAGTTATTTCAGTAGAATATATGGTTGATAGGAGTAGATCCAAG
AGGCCAAAAGAGGTGAGAGGGGACCTGGCTTGGCTGTAGACAAGCCACGC
ACAGGCAGCACAGAAAAATGGACGTGAGTGAGGAAAACAGGGCTCGTCCT
CTCGTGCTGTATCGTCTTCATAGCATGTCGCGGCAGATATGCTAAACTAA
TTTAATGCGTTGGAAGCCTTCGCCACCATTAGTATATAACACGCAGCGGT
GCCTCCTTTAGCTAACGGTGGAGCGAAATGTTTATTATTTGAAAAGATGA
ATTCATTCCAACCGTCCGAACATCCACACCTTCTTAGCACCATAAGAGGT
GTAGTCCAGGGGACCTGACCAACTATCGTCGGGTTCGAATGTGGACATTT
TAACATTTAAGCACAAAATCGTCATGTGTGATTATTCATTATAGAGGGAC
GCCAAACTAGAGTATAGGGAGTGAACTGTGTGTGGTGGTTAGGAAAGGTT
ATACGTAGCATTATCCATATGTAGAGAGGGAACATGCATTTTGATTGAGG
TTGTAGGGGTATAATTATTTATCGTACGGGGACGTAAAGCCAGAGCCTAG
AGGGTGGATTGTTGTGGTGGTTAGGAAGGGTGTCTTCACTTCATTACATT
ATAGTAATCATCATAATAATCATAATAGTAATATTAATAATAACAATGGT
TAGGGAGGGTGAAGTATTTTCATCACTTCATTACATGAGATATATTCCAC
GCAGTTAAATCGCTTGTGGCTGGCTTGGGCTCGTTCGACATCCCGCCAGC
TTGTTTTTTGTTGTGAAGATTCTGACTTTCTTCTCTACAATCTGTTTTAA
CCTTGAGTAGCAGTATATGTATTCGATGGGATTCTTGCGTACCCGGCGGT
GCGGGCTAGGACAGCACCTCCCTCTGAAGTGCTCGAGCACAAACACCCGA
CGCCCATTGCGTTATTGTTTTTCCTTTCAATGAAGTTATCCAACAACACT
AATCACGCTGTGCAGCAGCAGTGGGGAGTGCAGTAGCTTCTATTTTTGCT
TATTTTTGGAGAACCTATACGTATGAAGCGACCGCACCCGTAACCTGGTC
CGCGAAACCTCCCCAGGCTGTAATCCCCTCTTGCCGGATGACACGCGTGA
CCACCCGTGTCCCCTTCCTCCCTCTCCCTTTTGACACCGAAACGATACGT
ACACACTGCCATCAAGACGACGAAGGATTTAGCTCTAGAGGTGGATATCA
CATCCTCATCGACGCTGGAGGCTACAACTCCGGGGTGCGTATCGCGTGGG
TAAAGGCCAGGATGACCCGCCTGCCCACGTCCCCTCCTTGTAGGGTGCCG
TCGTGAGAGACAACATCCCGTCTGCCTTGTTCGTCCTCATTTCTAACTTG
CAGTCCGTCGTGCACCCTCGGGCTGGGCGTGTATTTTATTTTTACGCTTT
TTTCTTGTCATCTCCCTCGTTTTAAAGATAACATATCTTACTTTTGTCTT
GCGTACATGTCCTCTCGTTCCATAAACGTTGCATGAGGATGATCCACACA
TTGTGAGGATAATAGGCATATAGAGAGCATGGTGTATGACGGACACAGAT
GTAACACAAATTTCCGGAAGCGCAGATGTCAGTAGTGGTTTCCAACATGG
GCGAACTTTGCCCCACGAGGGCACACGGTCGCGGCTCCTCTCTTCGTCAC
AAGGAAGCGACACTTATCACCCGGGCATTGAGCGTTTGGGACAAAATGTC
TAACAATGATACGCCTGTGGAGCTTTATGTGCCTTAAGAGACAATTCAGC
ACAGCTTTGTTATCCCCTTTTCTTCCTCGCCTTATGGCGCAGCTAAACTT
CGGCTACTGCACCCTGCTAGTCATGGAAGACATCGGCCTTATCCCT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig11667:1883..3928-

>mRNA_H-elongata_contig11667.1308.1 ID=mRNA_H-elongata_contig11667.1308.1|Name=mRNA_H-elongata_contig11667.1308.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig11667:1883..3928- (Himanthalia elongata Himel1 dioecious)
TTCAACCGTAAGAAGCGACTGTCCGAAGACGAGTGCGATGCTTCCCTCGA
CTACTACGATGTCTGTATGGCGGACGAAGAAAACACAGACCCGATTGTAC
CGGGCCCTATGTGGGAGCGCTTCAGACCAGATTCTGAGCTCTTTTACCAC
GCCATTCAACCGTAAGAAGCGACTGTCCGAAGACGAGTGCGATGCTTCCC
TCGACTACTACGATGTCTGTATGGCGGACGAAGAAAACACAGACCCGATT
GTACCGGGCCCTATGTGGGAGCGCTTCAGACCAGATTCTGAGCTCTTTTA
CCACGCCAACGACGAAGGATTTAGCTCTAGAGGTGGATATCACATCCTCA
TCGACGCTGGAGGCTACAACTCCGGGACGACGAAGGATTTAGCTCTAGAG
GTGGATATCACATCCTCATCGACGCTGGAGGCTACAACTCCGGGCTAAAC
TTCGGCTACTGCACCCTGCTAGTCATGGAAGACATCGGCCTTATCCCTCT
AAACTTCGGCTACTGCACCCTGCTAGTCATGGAAGACATCGGCCTTATCC
CT
back to top