mRNA_H-elongata_contig116537.1297.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig116537.1297.1
Unique NamemRNA_H-elongata_contig116537.1297.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig116537.1297.1 vs. uniprot
Match: D7FMQ4_ECTSI (Rab6, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMQ4_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 2.020e-48
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:    1 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRNERGNDVVMMLVGNKTDLKERRQV 243
            YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRNERGNDVVMMLVGNKTDLKERRQV
Sbjct:   64 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRNERGNDVVMMLVGNKTDLKERRQV 144
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BLAST of mRNA_H-elongata_contig116537.1297.1 vs. uniprot
Match: A0A4D9D1C8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1C8_9STRA)

HSP 1 Score: 154 bits (389), Expect = 1.290e-45
Identity = 74/81 (91.36%), Postives = 80/81 (98.77%), Query Frame = 1 
Query:    1 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRNERGNDVVMMLVGNKTDLKERRQV 243
            YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV+VYDITNRASFLNTSKW++DVRNERGNDV++MLVGNKTDL +RRQV
Sbjct:   67 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWVDDVRNERGNDVIIMLVGNKTDLSDRRQV 147
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BLAST of mRNA_H-elongata_contig116537.1297.1 vs. uniprot
Match: A0A6V1RZC8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RZC8_HETAK)

HSP 1 Score: 154 bits (389), Expect = 2.330e-45
Identity = 77/81 (95.06%), Postives = 80/81 (98.77%), Query Frame = 1 
Query:    1 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRNERGNDVVMMLVGNKTDLKERRQV 243
            YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVR+ERGNDVV+MLVGNKTDL +RRQV
Sbjct:   88 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRSERGNDVVIMLVGNKTDLADRRQV 168
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BLAST of mRNA_H-elongata_contig116537.1297.1 vs. uniprot
Match: A0A7S2UZT5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZT5_9STRA)

HSP 1 Score: 153 bits (386), Expect = 3.880e-45
Identity = 75/81 (92.59%), Postives = 79/81 (97.53%), Query Frame = 1 
Query:    1 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRNERGNDVVMMLVGNKTDLKERRQV 243
            Y+ DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKW+EDVRNERGNDVV+MLVGNKTDL +RRQV
Sbjct:   69 YMPDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWVEDVRNERGNDVVIMLVGNKTDLSDRRQV 149
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BLAST of mRNA_H-elongata_contig116537.1297.1 vs. uniprot
Match: W7U9T7_9STRA (Small gtp-binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U9T7_9STRA)

HSP 1 Score: 154 bits (389), Expect = 1.530e-44
Identity = 74/81 (91.36%), Postives = 80/81 (98.77%), Query Frame = 1 
Query:    1 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRNERGNDVVMMLVGNKTDLKERRQV 243
            YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV+VYDITNRASFLNTSKW++DVRNERGNDV++MLVGNKTDL +RRQV
Sbjct:  160 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWVDDVRNERGNDVIIMLVGNKTDLSDRRQV 240
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BLAST of mRNA_H-elongata_contig116537.1297.1 vs. uniprot
Match: K3WVM7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WVM7_GLOUD)

HSP 1 Score: 151 bits (381), Expect = 2.940e-44
Identity = 74/81 (91.36%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:    1 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRNERGNDVVMMLVGNKTDLKERRQV 243
            Y+EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV+VYDITNRASFLNTSKWIEDVR ERG DVV+MLVGNKTD+ ERRQV
Sbjct:   82 YMEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWIEDVRTERGQDVVIMLVGNKTDISERRQV 162
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BLAST of mRNA_H-elongata_contig116537.1297.1 vs. uniprot
Match: A0A812JV32_9DINO (Ryh1 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812JV32_9DINO)

HSP 1 Score: 149 bits (376), Expect = 2.950e-44
Identity = 73/81 (90.12%), Postives = 79/81 (97.53%), Query Frame = 1 
Query:    1 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRNERGNDVVMMLVGNKTDLKERRQV 243
            YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS A++VYDITNRASFLNTSKWIEDVR+ERGNDVV++LVGNKTDL +RRQV
Sbjct:   23 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSGAIVVYDITNRASFLNTSKWIEDVRSERGNDVVIILVGNKTDLADRRQV 103
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BLAST of mRNA_H-elongata_contig116537.1297.1 vs. uniprot
Match: UPI001D059020 (uncharacterized protein n=1 Tax=Morchella sextelata TaxID=1174677 RepID=UPI001D059020)

HSP 1 Score: 148 bits (374), Expect = 3.240e-44
Identity = 70/81 (86.42%), Postives = 79/81 (97.53%), Query Frame = 1 
Query:    1 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRNERGNDVVMMLVGNKTDLKERRQV 243
            YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV+VYDITNRASF+NTSKW++DVR ERGNDV+++LVGNKTDL ++RQV
Sbjct:    2 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFINTSKWVDDVRGERGNDVIIVLVGNKTDLNDKRQV 82
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BLAST of mRNA_H-elongata_contig116537.1297.1 vs. uniprot
Match: A0A194S5F6_RHOGW (Uncharacterized protein (Fragment) n=1 Tax=Rhodotorula graminis (strain WP1) TaxID=578459 RepID=A0A194S5F6_RHOGW)

HSP 1 Score: 149 bits (377), Expect = 3.770e-44
Identity = 71/81 (87.65%), Postives = 80/81 (98.77%), Query Frame = 1 
Query:    1 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRNERGNDVVMMLVGNKTDLKERRQV 243
            YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV+VYDITNRASFLNTSKW++DVR+ERGNDV+++LVGNKTDL ++RQV
Sbjct:   44 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWVDDVRSERGNDVIIVLVGNKTDLNDKRQV 124
[Close]
BLAST of mRNA_H-elongata_contig116537.1297.1 vs. uniprot
Match: T0QYI2_SAPDV (Ras-like protein Rab-6A n=4 Tax=Saprolegniaceae TaxID=4764 RepID=T0QYI2_SAPDV)

HSP 1 Score: 149 bits (377), Expect = 6.540e-44
Identity = 74/81 (91.36%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:    1 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRNERGNDVVMMLVGNKTDLKERRQV 243
            YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV+VYDITNRASFLNTSKWIEDVR ERG DVV+MLVGNKTD+ +RRQV
Sbjct:   60 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWIEDVRAERGQDVVIMLVGNKTDIADRRQV 140
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116537.1297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMQ4_ECTSI2.020e-48100.00Rab6, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9D1C8_9STRA1.290e-4591.36Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A6V1RZC8_HETAK2.330e-4595.06Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UZT5_9STRA3.880e-4592.59Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7U9T7_9STRA1.530e-4491.36Small gtp-binding protein n=1 Tax=Nannochloropsis ... [more]
K3WVM7_GLOUD2.940e-4491.36Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A812JV32_9DINO2.950e-4490.12Ryh1 protein n=1 Tax=Symbiodinium natans TaxID=878... [more]
UPI001D0590203.240e-4486.42uncharacterized protein n=1 Tax=Morchella sextelat... [more]
A0A194S5F6_RHOGW3.770e-4487.65Uncharacterized protein (Fragment) n=1 Tax=Rhodoto... [more]
T0QYI2_SAPDV6.540e-4491.36Ras-like protein Rab-6A n=4 Tax=Saprolegniaceae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116537contigH-elongata_contig116537:868..1505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.9
Seed ortholog evalue6.1e-38
Seed eggNOG ortholog2880.D7FMQ4
Preferred nameRab6
KEGG koko:K07893,ko:K07976
GOsGO:0000139,GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005768,GO:0005773,GO:0005774,GO:0005794,GO:0005802,GO:0005829,GO:0005886,GO:0005911,GO:0006810,GO:0006890,GO:0006891,GO:0008150,GO:0009506,GO:0012505,GO:0016020,GO:0016192,GO:0016197,GO:0016482,GO:0017076,GO:0019001,GO:0030054,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0042147,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055044,GO:0071944,GO:0097159,GO:0097367,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:1901265,GO:1901363
EggNOG free text desc.retrograde vesicle-mediated transport, Golgi to ER
EggNOG OGsKOG0094@1,KOG0094@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04031,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929676.9558542-CDS-H-elongata_contig116537:867..10011622929676.9558542-CDS-H-elongata_contig116537:867..1001Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116537 868..1001 +
1691679115.7846727-CDS-H-elongata_contig116537:867..10011691679115.7846727-CDS-H-elongata_contig116537:867..1001Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116537 868..1001 +
1622929676.9669013-CDS-H-elongata_contig116537:1396..15051622929676.9669013-CDS-H-elongata_contig116537:1396..1505Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116537 1397..1505 +
1691679115.7988389-CDS-H-elongata_contig116537:1396..15051691679115.7988389-CDS-H-elongata_contig116537:1396..1505Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116537 1397..1505 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116537.1297.1prot_H-elongata_contig116537.1297.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig116537 868..1505 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig116537.1297.1

>prot_H-elongata_contig116537.1297.1 ID=prot_H-elongata_contig116537.1297.1|Name=mRNA_H-elongata_contig116537.1297.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTS
KWIEDVRNERGNDVVMMLVGNKTDLKERRQV
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mRNA from alignment at H-elongata_contig116537:868..1505+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig116537.1297.1 ID=mRNA_H-elongata_contig116537.1297.1|Name=mRNA_H-elongata_contig116537.1297.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=638bp|location=Sequence derived from alignment at H-elongata_contig116537:868..1505+ (Himanthalia elongata Himel1 dioecious)
TACTTGGAAGACCGTACCGTACGGCTGCAGCTGTGGGACACCGCCGGGCA
GGAGCGTTTCCGGTCGCTGATCCCTAGCTACATCCGAGACTCTTCCGTCG
CGGTGATTGTGTACGACATCACCAACAGGGCTAGGTGGGTGTGAAGGGAG
GGAAAATGCCAGAATCGAGAACATACTTGTTTATCGCTGTTCGCCGTATT
TTCTATGGAAACCCCACAGGAGGCGAGATAGGAGAGGTGTTTGAGGGACG
AGGAGAACGGTCGGGCGTGCGTTCTTCTCCCGCCCAGGCGTTTGCGCGCG
GATTTTGTTTTTCGGCGGGCTTGGCGTGGCTGAATCTGCAGCTGCACGCA
CGCACGTCTCTTGTGTGTCTTGCGTGTTTTGTACATACGCGTCTATTGTG
TAGTTTGCTAGTCGACATGGTTTTGAACAGCCATGTGGCAGCTCGAGCAA
AATGTGATTCGAATCGGTGATCGAACAGAGACAAGAAGACAAACCTCTCT
GGCGGTCTCTGTCTTGTGTTTCCATGTAGCTTCCTGAACACAAGCAAGTG
GATTGAAGACGTCCGCAACGAACGAGGCAACGATGTGGTGATGATGCTCG
TCGGGAACAAGACCGACCTCAAGGAACGGCGGCAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig116537:868..1505+

>mRNA_H-elongata_contig116537.1297.1 ID=mRNA_H-elongata_contig116537.1297.1|Name=mRNA_H-elongata_contig116537.1297.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig116537:868..1505+ (Himanthalia elongata Himel1 dioecious)
TACTTGGAAGACCGTACCGTACGGCTGCAGCTGTGGGACACCGCCGGGCA
GGAGCGTTTCCGGTCGCTGATCCCTAGCTACATCCGAGACTCTTCCGTCG
CGGTGATTGTGTACGACATCACCAACAGGGCTAGTACTTGGAAGACCGTA
CCGTACGGCTGCAGCTGTGGGACACCGCCGGGCAGGAGCGTTTCCGGTCG
CTGATCCCTAGCTACATCCGAGACTCTTCCGTCGCGGTGATTGTGTACGA
CATCACCAACAGGGCTAGCTTCCTGAACACAAGCAAGTGGATTGAAGACG
TCCGCAACGAACGAGGCAACGATGTGGTGATGATGCTCGTCGGGAACAAG
ACCGACCTCAAGGAACGGCGGCAGGTGCTTCCTGAACACAAGCAAGTGGA
TTGAAGACGTCCGCAACGAACGAGGCAACGATGTGGTGATGATGCTCGTC
GGGAACAAGACCGACCTCAAGGAACGGCGGCAGGTG
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