mRNA_H-elongata_contig115749.1246.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig115749.1246.1
Unique NamemRNA_H-elongata_contig115749.1246.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig115749.1246.1 vs. uniprot
Match: D7FU45_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU45_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 6.090e-28
Identity = 56/87 (64.37%), Postives = 72/87 (82.76%), Query Frame = 1 
Query:  139 LLDAFPLLSPAYQTFEYGFLVDIGAKANGLVHISSISDKEDRYLGSLRDFASEGDRMRVRVNGLDEKGRLSLSYVARERDQPKPPNR 399
            L++   +L    +  E+GF VD+GAKANGLVHISSIS+KE+RYL +L +FAS GD+M VRVNG+DE+GRLSL+Y ARE+D+PKPPNR
Sbjct:  306 LVEGEEILGGIVRVLEFGFFVDVGAKANGLVHISSISEKENRYLDNLNEFASVGDKMYVRVNGVDEEGRLSLAYAAREKDRPKPPNR 392
[Close]
BLAST of mRNA_H-elongata_contig115749.1246.1 vs. uniprot
Match: UPI00195F451E (S1 domain-containing RNA-binding protein n=2 Tax=Veillonella magna TaxID=464322 RepID=UPI00195F451E)

HSP 1 Score: 58.5 bits (140), Expect = 1.990e-7
Identity = 29/68 (42.65%), Postives = 47/68 (69.12%), Query Frame = 1 
Query:  184 EYGFLVDIGAKANGLVHISSISDKEDRYLGSLRDFASEGDRMRVRVNGLDEKGRLSLSYVARERDQPK 387
            ++G  VD+G K  GLVHIS ++++   Y+  + DF  E D+++V+V G+DEKG++SLS    ++ QPK
Sbjct:   18 KFGAFVDLGNKQTGLVHISEVANE---YVEDIHDFLKEQDKVKVKVLGVDEKGKVSLSI---KQTQPK 79
[Close]
BLAST of mRNA_H-elongata_contig115749.1246.1 vs. uniprot
Match: A0A355WF14_9CLOT (RNA-binding protein S1 n=1 Tax=Clostridiaceae bacterium TaxID=1898204 RepID=A0A355WF14_9CLOT)

HSP 1 Score: 55.5 bits (132), Expect = 1.630e-6
Identity = 30/68 (44.12%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:  184 EYGFLVDIGAKANGLVHISSISDKEDRYLGSLRDFASEGDRMRVRVNGLDEKGRLSLSYVARERDQPK 387
             +G  VD+  K  GLVHIS ISD    Y+  +RD+  E D+++V+V G+D  GR+SLS   ++ +QPK
Sbjct:   18 NFGVFVDVSGKT-GLVHISEISDT---YVKDIRDYLKERDKVKVKVIGIDNDGRISLSI--KQANQPK 79
[Close]
BLAST of mRNA_H-elongata_contig115749.1246.1 vs. uniprot
Match: A0A1G2KUR9_9BACT (Polyribonucleotide nucleotidyltransferase n=1 Tax=Candidatus Sungbacteria bacterium RIFCSPHIGHO2_02_FULL_49_20 TaxID=1802272 RepID=A0A1G2KUR9_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 2.320e-6
Identity = 26/64 (40.62%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:  166 PAYQTFEYGFLVDIGAKANGLVHISSISDKEDRYLGSLRDFASEGDRMRVRVNGLDEKGRLSLS 357
            P  + FE+G +V++G K NGL+HIS ++      +GS+ D  + GD + V+V  +DE+GR++LS
Sbjct:  632 PVTRIFEFGAMVEVGPKQNGLIHISELAPYR---VGSVTDIVNVGDVVTVKVKNIDEQGRVNLS 692
[Close]
BLAST of mRNA_H-elongata_contig115749.1246.1 vs. uniprot
Match: A0A3C2BCM8_9FIRM (RNA-binding protein S1 n=1 Tax=Ruminococcus sp. TaxID=41978 RepID=A0A3C2BCM8_9FIRM)

HSP 1 Score: 54.7 bits (130), Expect = 4.230e-6
Identity = 29/70 (41.43%), Postives = 44/70 (62.86%), Query Frame = 1 
Query:  184 EYGFLVDIGAKANGLVHISSISDKEDRYLGSLRDFASEGDRMRVRVNGLDEKGRLSLSYV-ARERDQPKP 390
            +YG  VDI   A G+VHIS IS+    ++  +RDF +E   ++V+V G++E G++SLS   A E   P+P
Sbjct:   18 QYGAFVDIEGGATGMVHISEISNS---FVNEIRDFLTENQEVKVKVIGINEAGKVSLSIKKAVENPNPRP 84
[Close]
BLAST of mRNA_H-elongata_contig115749.1246.1 vs. uniprot
Match: A0A1G8M6K6_9CLOT (S1 RNA binding domain protein n=4 Tax=Proteiniclasticum TaxID=1155385 RepID=A0A1G8M6K6_9CLOT)

HSP 1 Score: 53.9 bits (128), Expect = 6.170e-6
Identity = 27/72 (37.50%), Postives = 45/72 (62.50%), Query Frame = 1 
Query:  184 EYGFLVDIGAKANGLVHISSISDKEDRYLGSLRDFASEGDRMRVRVNGLDEKGRLSLSYVARERDQPKPPNR 399
             +G  +D+  K  GLVHIS ++D    Y+  +++F  EGD+++V+V G+D+ G++SLS     +  PK  NR
Sbjct:   18 NFGAFIDLSGKT-GLVHISEVADT---YVKDIKEFIKEGDKVQVKVLGIDDNGKISLSIKQGVQIAPKRTNR 85
[Close]
BLAST of mRNA_H-elongata_contig115749.1246.1 vs. uniprot
Match: A0A352DP93_9FIRM (RNA-binding protein S1 n=1 Tax=Ruminococcus sp. TaxID=41978 RepID=A0A352DP93_9FIRM)

HSP 1 Score: 53.9 bits (128), Expect = 8.250e-6
Identity = 23/68 (33.82%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:  184 EYGFLVDIGAKANGLVHISSISDKEDRYLGSLRDFASEGDRMRVRVNGLDEKGRLSLSYVARERDQPK 387
            +YG  VD+    +G++HIS +++    Y+  + DF +EG  ++V+V G++EKG++SLS    + + P+
Sbjct:   18 QYGAFVDMEDGGSGMIHISEVANT---YVNDIHDFLTEGQEVKVKVIGINEKGKVSLSLKKAQENSPE 82
[Close]
BLAST of mRNA_H-elongata_contig115749.1246.1 vs. uniprot
Match: UPI0008D9B9BD (S1 RNA-binding domain-containing protein n=1 Tax=Peptoniphilus raoultii TaxID=1776387 RepID=UPI0008D9B9BD)

HSP 1 Score: 53.1 bits (126), Expect = 1.080e-5
Identity = 26/67 (38.81%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:  184 EYGFLVDIGAKANGLVHISSISDKEDRYLGSLRDFASEGDRMRVRVNGLDEKGRLSLSYVARERDQP 384
            ++G  V++   A+GLVHIS ISD    Y+ ++ DF  +G +++V+V  +D+KG++SLS  A    +P
Sbjct:   18 KFGAFVNLDDGASGLVHISEISDS---YVENVSDFLEKGQKVKVKVISIDDKGKVSLSIKAAMEKKP 81
[Close]
BLAST of mRNA_H-elongata_contig115749.1246.1 vs. uniprot
Match: A0A1F7QPI8_9BACT (Polyribonucleotide nucleotidyltransferase n=1 Tax=Candidatus Saccharibacteria bacterium RIFCSPHIGHO2_12_FULL_41_12 TaxID=1802138 RepID=A0A1F7QPI8_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 1.900e-5
Identity = 28/76 (36.84%), Postives = 44/76 (57.89%), Query Frame = 1 
Query:  166 PAYQTFEYGFLVDIGAKANGLVHISSISDKEDRYLGSLRDFASEGDRMRVRVNGLDEKGRLSLSYVA--RERDQPK 387
            P     ++G  V I     GLVH+S ++++    +    DF  EGD++ V++ G+D++GRL LS  A  RERD+ K
Sbjct:  630 PVVSVLDFGAFVQIMPGKEGLVHVSEMAEER---VSKTTDFIKEGDKVTVKLTGIDDRGRLQLSMKAAKRERDEKK 702
[Close]
BLAST of mRNA_H-elongata_contig115749.1246.1 vs. uniprot
Match: A0A651F5L0_9PROT (Polyribonucleotide nucleotidyltransferase n=1 Tax=Micavibrio sp. TaxID=2024841 RepID=A0A651F5L0_9PROT)

HSP 1 Score: 54.3 bits (129), Expect = 3.470e-5
Identity = 25/58 (43.10%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:  184 EYGFLVDIGAKANGLVHISSISDKEDRYLGSLRDFASEGDRMRVRVNGLDEKGRLSLS 357
            ++G  V+I AK +GL+HIS I+D   R +G + D  +EGD ++V+  G+D++GR+ LS
Sbjct:  634 DFGAFVNIFAKTDGLLHISEIAD---RRIGQVTDVLNEGDEVKVKCIGVDDRGRIKLS 688
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115749.1246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7FU45_ECTSI6.090e-2864.37Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI00195F451E1.990e-742.65S1 domain-containing RNA-binding protein n=2 Tax=V... [more]
A0A355WF14_9CLOT1.630e-644.12RNA-binding protein S1 n=1 Tax=Clostridiaceae bact... [more]
A0A1G2KUR9_9BACT2.320e-640.63Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A3C2BCM8_9FIRM4.230e-641.43RNA-binding protein S1 n=1 Tax=Ruminococcus sp. Ta... [more]
A0A1G8M6K6_9CLOT6.170e-637.50S1 RNA binding domain protein n=4 Tax=Proteiniclas... [more]
A0A352DP93_9FIRM8.250e-633.82RNA-binding protein S1 n=1 Tax=Ruminococcus sp. Ta... [more]
UPI0008D9B9BD1.080e-538.81S1 RNA-binding domain-containing protein n=1 Tax=P... [more]
A0A1F7QPI8_9BACT1.900e-536.84Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A651F5L0_9PROT3.470e-543.10Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig115749contigH-elongata_contig115749:116..1281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score61.2
Seed ortholog evalue6.1e-07
Seed eggNOG ortholog1123489.AUAN01000008_gene93
Preferred nameyabR
KEGG koko:K07570,ko:K07571
EggNOG free text desc.S1 RNA binding domain protein
EggNOG OGs1V6FE@1239,4H4QA@909932,COG1098@1,COG1098@2
Ec32 ortholog descriptionRibosomal protein S1, RNA-binding domain
Ec32 orthologEc-25_000700.1
COG Functional cat.J
Best tax levelNegativicutes
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categorysignal peptide
Exons3
Model size596
Cds size594
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig115749.1246.1prot_H-elongata_contig115749.1246.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig115749 116..1281 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929671.4708912-CDS-H-elongata_contig115749:115..3781622929671.4708912-CDS-H-elongata_contig115749:115..378Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115749 116..378 +
1691679113.7277873-CDS-H-elongata_contig115749:115..3781691679113.7277873-CDS-H-elongata_contig115749:115..378Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115749 116..378 +
1622929671.49847-CDS-H-elongata_contig115749:734..9391622929671.49847-CDS-H-elongata_contig115749:734..939Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115749 735..939 +
1691679113.756084-CDS-H-elongata_contig115749:734..9391691679113.756084-CDS-H-elongata_contig115749:734..939Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115749 735..939 +
1622929671.5186958-CDS-H-elongata_contig115749:1155..12811622929671.5186958-CDS-H-elongata_contig115749:1155..1281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115749 1156..1281 +
1691679113.7689-CDS-H-elongata_contig115749:1155..12811691679113.7689-CDS-H-elongata_contig115749:1155..1281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115749 1156..1281 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig115749.1246.1

>prot_H-elongata_contig115749.1246.1 ID=prot_H-elongata_contig115749.1246.1|Name=mRNA_H-elongata_contig115749.1246.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=198bp
VPCFSPAPRASIFVSSKAPGLLCFALLCSSRYLLARLVVVCLCFSPLLDA
FPLLSPAYQTFEYGFLVDIGAKANGLVHISSISDKEDRYLGSLRDFASEG
DRMRVRVNGLDEKGRLSLSYVARERDQPKPPNRRERRAAAQMGQTTIAAS
SESVSFDDGDDDDDGGFLFDSPPRHGGVDEDQGGYTSNLDYDIFDEM*
back to top

mRNA from alignment at H-elongata_contig115749:116..1281+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig115749.1246.1 ID=mRNA_H-elongata_contig115749.1246.1|Name=mRNA_H-elongata_contig115749.1246.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1166bp|location=Sequence derived from alignment at H-elongata_contig115749:116..1281+ (Himanthalia elongata Himel1 dioecious)
GTGCCTTGCTTTTCGCCCGCTCCTCGTGCGTCCATTTTTGTTTCTTCCAA
AGCTCCCGGTTTGCTTTGCTTTGCTTTGCTTTGTAGCTCAAGGTACCTCT
TAGCACGACTTGTAGTGGTCTGTCTTTGTTTTTCCCCTCTTTTGGACGCT
TTCCCGTTACTCTCCCCTGCGTACCAGACGTTTGAATACGGGTTTCTCGT
GGACATCGGCGCGAAAGCCAACGGTCTGGTGCACATTTCTTCAATCAGCG
ACAAGGAGGACAGGTTTGCGCATTGCCTTCAAGGCGCGTTTGTTTCGAAT
CTGGATGATTGAGGGGGGCGCTCGATGCATCAAACTCTTCGTTTCCGAGT
CGCGCCCTTACTGCGTGCTGTGACACGCTGGAGCGGCGGCGGCTGATTTG
ATCTTCGAGAAGATTATTTTTCTTCACACTTCGTCATATATATTTATTTT
ATGCATTTTGGATGCACGACACGTTTGGATGTCCTGCGTTGATGTTTTAC
CAGGCCGAGCAAGTTTCCCCCGCCTCATCTGTCATCCCGGCTCCCCGACT
GACCTACCCGTGCATCGTTGTCCGGGTGAATCCCCCCCCCCCTCCCCTTC
GTCGAAACGGCCACGACAGGTATCTGGGAAGCCTGAGAGATTTCGCGAGT
GAGGGAGACCGGATGCGCGTTCGCGTAAACGGCCTGGACGAGAAAGGCCG
CCTTTCGCTGTCGTACGTCGCAAGGGAAAGGGATCAACCTAAGCCGCCGA
ACCGCCGCGAACGGAGGGCGGCAGCGCAGATGGGGCAAACGACAATCGCA
GCTTCTAGTGAGTCAGTCTCCTTCGTTTCTTCCCCCCGCGTTTGACGTTT
TCTAGAGCATCATGTTTAGCGCAGCTGATATCTATCTATCTGTCTATCTC
TATATACTGCGTATGCATATATATATATCGGGGACCTTGCGCGATTTGCA
GATGAAAGGACACTATCAGCATTCGATGACGAAGCGACTGTGGAAGCGAG
AGAAGCTCGAGATACTATTACTATAGGAGTCGAGGAGGAGGATGATGGCG
ATGATGATGACGACGGAGGGTTTCTTTTCGATTCCCCTCCGCGCCACGGC
GGCGTCGATGAGGACCAGGGCGGGTACACTTCAAACCTAGACTACGACAT
CTTTGATGAAATGTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig115749:116..1281+

>mRNA_H-elongata_contig115749.1246.1 ID=mRNA_H-elongata_contig115749.1246.1|Name=mRNA_H-elongata_contig115749.1246.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1188bp|location=Sequence derived from alignment at H-elongata_contig115749:116..1281+ (Himanthalia elongata Himel1 dioecious)
GTGCCTTGCTTTTCGCCCGCTCCTCGTGCGTCCATTTTTGTTTCTTCCAA
AGCTCCCGGTTTGCTTTGCTTTGCTTTGCTTTGTAGCTCAAGGTACCTCT
TAGCACGACTTGTAGTGGTCTGTCTTTGTTTTTCCCCTCTTTTGGACGCT
TTCCCGTTACTCTCCCCTGCGTACCAGACGTTTGAATACGGGTTTCTCGT
GGACATCGGCGCGAAAGCCAACGGTCTGGTGCACATTTCTTCAATCAGCG
ACAAGGAGGACAGGTGCCTTGCTTTTCGCCCGCTCCTCGTGCGTCCATTT
TTGTTTCTTCCAAAGCTCCCGGTTTGCTTTGCTTTGCTTTGCTTTGTAGC
TCAAGGTACCTCTTAGCACGACTTGTAGTGGTCTGTCTTTGTTTTTCCCC
TCTTTTGGACGCTTTCCCGTTACTCTCCCCTGCGTACCAGACGTTTGAAT
ACGGGTTTCTCGTGGACATCGGCGCGAAAGCCAACGGTCTGGTGCACATT
TCTTCAATCAGCGACAAGGAGGACAGGTATCTGGGAAGCCTGAGAGATTT
CGCGAGTGAGGGAGACCGGATGCGCGTTCGCGTAAACGGCCTGGACGAGA
AAGGCCGCCTTTCGCTGTCGTACGTCGCAAGGGAAAGGGATCAACCTAAG
CCGCCGAACCGCCGCGAACGGAGGGCGGCAGCGCAGATGGGGCAAACGAC
AATCGCAGCTTCTAGTGAGTCAGTCTCCTTCGTATCTGGGAAGCCTGAGA
GATTTCGCGAGTGAGGGAGACCGGATGCGCGTTCGCGTAAACGGCCTGGA
CGAGAAAGGCCGCCTTTCGCTGTCGTACGTCGCAAGGGAAAGGGATCAAC
CTAAGCCGCCGAACCGCCGCGAACGGAGGGCGGCAGCGCAGATGGGGCAA
ACGACAATCGCAGCTTCTAGTGAGTCAGTCTCCTTCGATGATGGCGATGA
TGATGACGACGGAGGGTTTCTTTTCGATTCCCCTCCGCGCCACGGCGGCG
TCGATGAGGACCAGGGCGGGTACACTTCAAACCTAGACTACGACATCTTT
GATGAAATGTAGGATGATGGCGATGATGATGACGACGGAGGGTTTCTTTT
CGATTCCCCTCCGCGCCACGGCGGCGTCGATGAGGACCAGGGCGGGTACA
CTTCAAACCTAGACTACGACATCTTTGATGAAATGTAG
back to top