prot_H-elongata_contig115749.1246.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig115749.1246.1
Unique Nameprot_H-elongata_contig115749.1246.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length198
Homology
BLAST of mRNA_H-elongata_contig115749.1246.1 vs. uniprot
Match: D7FU45_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU45_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 6.090e-28
Identity = 56/87 (64.37%), Postives = 72/87 (82.76%), Query Frame = 0
Query:   47 LLDAFPLLSPAYQTFEYGFLVDIGAKANGLVHISSISDKEDRYLGSLRDFASEGDRMRVRVNGLDEKGRLSLSYVARERDQPKPPNR 133
            L++   +L    +  E+GF VD+GAKANGLVHISSIS+KE+RYL +L +FAS GD+M VRVNG+DE+GRLSL+Y ARE+D+PKPPNR
Sbjct:  306 LVEGEEILGGIVRVLEFGFFVDVGAKANGLVHISSISEKENRYLDNLNEFASVGDKMYVRVNGVDEEGRLSLAYAAREKDRPKPPNR 392          
BLAST of mRNA_H-elongata_contig115749.1246.1 vs. uniprot
Match: UPI00195F451E (S1 domain-containing RNA-binding protein n=2 Tax=Veillonella magna TaxID=464322 RepID=UPI00195F451E)

HSP 1 Score: 58.5 bits (140), Expect = 1.990e-7
Identity = 29/68 (42.65%), Postives = 47/68 (69.12%), Query Frame = 0
Query:   62 EYGFLVDIGAKANGLVHISSISDKEDRYLGSLRDFASEGDRMRVRVNGLDEKGRLSLSYVARERDQPK 129
            ++G  VD+G K  GLVHIS ++++   Y+  + DF  E D+++V+V G+DEKG++SLS    ++ QPK
Sbjct:   18 KFGAFVDLGNKQTGLVHISEVANE---YVEDIHDFLKEQDKVKVKVLGVDEKGKVSLSI---KQTQPK 79          
BLAST of mRNA_H-elongata_contig115749.1246.1 vs. uniprot
Match: A0A355WF14_9CLOT (RNA-binding protein S1 n=1 Tax=Clostridiaceae bacterium TaxID=1898204 RepID=A0A355WF14_9CLOT)

HSP 1 Score: 55.5 bits (132), Expect = 1.630e-6
Identity = 30/68 (44.12%), Postives = 44/68 (64.71%), Query Frame = 0
Query:   62 EYGFLVDIGAKANGLVHISSISDKEDRYLGSLRDFASEGDRMRVRVNGLDEKGRLSLSYVARERDQPK 129
             +G  VD+  K  GLVHIS ISD    Y+  +RD+  E D+++V+V G+D  GR+SLS   ++ +QPK
Sbjct:   18 NFGVFVDVSGKT-GLVHISEISDT---YVKDIRDYLKERDKVKVKVIGIDNDGRISLSI--KQANQPK 79          
BLAST of mRNA_H-elongata_contig115749.1246.1 vs. uniprot
Match: A0A1G2KUR9_9BACT (Polyribonucleotide nucleotidyltransferase n=1 Tax=Candidatus Sungbacteria bacterium RIFCSPHIGHO2_02_FULL_49_20 TaxID=1802272 RepID=A0A1G2KUR9_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 2.320e-6
Identity = 26/64 (40.62%), Postives = 43/64 (67.19%), Query Frame = 0
Query:   56 PAYQTFEYGFLVDIGAKANGLVHISSISDKEDRYLGSLRDFASEGDRMRVRVNGLDEKGRLSLS 119
            P  + FE+G +V++G K NGL+HIS ++      +GS+ D  + GD + V+V  +DE+GR++LS
Sbjct:  632 PVTRIFEFGAMVEVGPKQNGLIHISELAPYR---VGSVTDIVNVGDVVTVKVKNIDEQGRVNLS 692          
BLAST of mRNA_H-elongata_contig115749.1246.1 vs. uniprot
Match: A0A3C2BCM8_9FIRM (RNA-binding protein S1 n=1 Tax=Ruminococcus sp. TaxID=41978 RepID=A0A3C2BCM8_9FIRM)

HSP 1 Score: 54.7 bits (130), Expect = 4.230e-6
Identity = 29/70 (41.43%), Postives = 44/70 (62.86%), Query Frame = 0
Query:   62 EYGFLVDIGAKANGLVHISSISDKEDRYLGSLRDFASEGDRMRVRVNGLDEKGRLSLSYV-ARERDQPKP 130
            +YG  VDI   A G+VHIS IS+    ++  +RDF +E   ++V+V G++E G++SLS   A E   P+P
Sbjct:   18 QYGAFVDIEGGATGMVHISEISNS---FVNEIRDFLTENQEVKVKVIGINEAGKVSLSIKKAVENPNPRP 84          
BLAST of mRNA_H-elongata_contig115749.1246.1 vs. uniprot
Match: A0A1G8M6K6_9CLOT (S1 RNA binding domain protein n=4 Tax=Proteiniclasticum TaxID=1155385 RepID=A0A1G8M6K6_9CLOT)

HSP 1 Score: 53.9 bits (128), Expect = 6.170e-6
Identity = 27/72 (37.50%), Postives = 45/72 (62.50%), Query Frame = 0
Query:   62 EYGFLVDIGAKANGLVHISSISDKEDRYLGSLRDFASEGDRMRVRVNGLDEKGRLSLSYVARERDQPKPPNR 133
             +G  +D+  K  GLVHIS ++D    Y+  +++F  EGD+++V+V G+D+ G++SLS     +  PK  NR
Sbjct:   18 NFGAFIDLSGKT-GLVHISEVADT---YVKDIKEFIKEGDKVQVKVLGIDDNGKISLSIKQGVQIAPKRTNR 85          
BLAST of mRNA_H-elongata_contig115749.1246.1 vs. uniprot
Match: A0A352DP93_9FIRM (RNA-binding protein S1 n=1 Tax=Ruminococcus sp. TaxID=41978 RepID=A0A352DP93_9FIRM)

HSP 1 Score: 53.9 bits (128), Expect = 8.250e-6
Identity = 23/68 (33.82%), Postives = 44/68 (64.71%), Query Frame = 0
Query:   62 EYGFLVDIGAKANGLVHISSISDKEDRYLGSLRDFASEGDRMRVRVNGLDEKGRLSLSYVARERDQPK 129
            +YG  VD+    +G++HIS +++    Y+  + DF +EG  ++V+V G++EKG++SLS    + + P+
Sbjct:   18 QYGAFVDMEDGGSGMIHISEVANT---YVNDIHDFLTEGQEVKVKVIGINEKGKVSLSLKKAQENSPE 82          
BLAST of mRNA_H-elongata_contig115749.1246.1 vs. uniprot
Match: UPI0008D9B9BD (S1 RNA-binding domain-containing protein n=1 Tax=Peptoniphilus raoultii TaxID=1776387 RepID=UPI0008D9B9BD)

HSP 1 Score: 53.1 bits (126), Expect = 1.080e-5
Identity = 26/67 (38.81%), Postives = 44/67 (65.67%), Query Frame = 0
Query:   62 EYGFLVDIGAKANGLVHISSISDKEDRYLGSLRDFASEGDRMRVRVNGLDEKGRLSLSYVARERDQP 128
            ++G  V++   A+GLVHIS ISD    Y+ ++ DF  +G +++V+V  +D+KG++SLS  A    +P
Sbjct:   18 KFGAFVNLDDGASGLVHISEISDS---YVENVSDFLEKGQKVKVKVISIDDKGKVSLSIKAAMEKKP 81          
BLAST of mRNA_H-elongata_contig115749.1246.1 vs. uniprot
Match: A0A1F7QPI8_9BACT (Polyribonucleotide nucleotidyltransferase n=1 Tax=Candidatus Saccharibacteria bacterium RIFCSPHIGHO2_12_FULL_41_12 TaxID=1802138 RepID=A0A1F7QPI8_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 1.900e-5
Identity = 28/76 (36.84%), Postives = 44/76 (57.89%), Query Frame = 0
Query:   56 PAYQTFEYGFLVDIGAKANGLVHISSISDKEDRYLGSLRDFASEGDRMRVRVNGLDEKGRLSLSYVA--RERDQPK 129
            P     ++G  V I     GLVH+S ++++    +    DF  EGD++ V++ G+D++GRL LS  A  RERD+ K
Sbjct:  630 PVVSVLDFGAFVQIMPGKEGLVHVSEMAEER---VSKTTDFIKEGDKVTVKLTGIDDRGRLQLSMKAAKRERDEKK 702          
BLAST of mRNA_H-elongata_contig115749.1246.1 vs. uniprot
Match: A0A651F5L0_9PROT (Polyribonucleotide nucleotidyltransferase n=1 Tax=Micavibrio sp. TaxID=2024841 RepID=A0A651F5L0_9PROT)

HSP 1 Score: 54.3 bits (129), Expect = 3.470e-5
Identity = 25/58 (43.10%), Postives = 41/58 (70.69%), Query Frame = 0
Query:   62 EYGFLVDIGAKANGLVHISSISDKEDRYLGSLRDFASEGDRMRVRVNGLDEKGRLSLS 119
            ++G  V+I AK +GL+HIS I+D   R +G + D  +EGD ++V+  G+D++GR+ LS
Sbjct:  634 DFGAFVNIFAKTDGLLHISEIAD---RRIGQVTDVLNEGDEVKVKCIGVDDRGRIKLS 688          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115749.1246.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7FU45_ECTSI6.090e-2864.37Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI00195F451E1.990e-742.65S1 domain-containing RNA-binding protein n=2 Tax=V... [more]
A0A355WF14_9CLOT1.630e-644.12RNA-binding protein S1 n=1 Tax=Clostridiaceae bact... [more]
A0A1G2KUR9_9BACT2.320e-640.63Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A3C2BCM8_9FIRM4.230e-641.43RNA-binding protein S1 n=1 Tax=Ruminococcus sp. Ta... [more]
A0A1G8M6K6_9CLOT6.170e-637.50S1 RNA binding domain protein n=4 Tax=Proteiniclas... [more]
A0A352DP93_9FIRM8.250e-633.82RNA-binding protein S1 n=1 Tax=Ruminococcus sp. Ta... [more]
UPI0008D9B9BD1.080e-538.81S1 RNA-binding domain-containing protein n=1 Tax=P... [more]
A0A1F7QPI8_9BACT1.900e-536.84Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A651F5L0_9PROT3.470e-543.10Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022967RNA-binding domain, S1SMARTSM00316S1_6coord: 56..121
e-value: 0.0024
score: 27.1
NoneNo IPR availableGENE3D2.40.50.140coord: 58..123
e-value: 8.8E-11
score: 43.5
IPR003029S1 domainPFAMPF00575S1coord: 62..120
e-value: 5.1E-7
score: 29.9
IPR003029S1 domainPROSITEPS50126S1coord: 45..121
score: 11.764
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 61..126

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig115749contigH-elongata_contig115749:116..1281 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig115749.1246.1mRNA_H-elongata_contig115749.1246.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig115749 116..1281 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig115749.1246.1 ID=prot_H-elongata_contig115749.1246.1|Name=mRNA_H-elongata_contig115749.1246.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=198bp
VPCFSPAPRASIFVSSKAPGLLCFALLCSSRYLLARLVVVCLCFSPLLDA
FPLLSPAYQTFEYGFLVDIGAKANGLVHISSISDKEDRYLGSLRDFASEG
DRMRVRVNGLDEKGRLSLSYVARERDQPKPPNRRERRAAAQMGQTTIAAS
SESVSFDDGDDDDDGGFLFDSPPRHGGVDEDQGGYTSNLDYDIFDEM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022967S1_dom
IPR003029S1_domain
IPR012340NA-bd_OB-fold