mRNA_H-elongata_contig115692.1241.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig115692.1241.1
Unique NamemRNA_H-elongata_contig115692.1241.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig115692.1241.1 vs. uniprot
Match: D8LHH3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHH3_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 2.300e-36
Identity = 63/94 (67.02%), Postives = 74/94 (78.72%), Query Frame = 1
Query:   22 ISAGLLFTLLDLLQLRGLALHLEDLWGGRVGTLITNNPRATDPFVLLAHHRHSFWPLDPFRLASRLILPEGFPAHPHRGFQTVTYVMKVRGGCI 303
            +  GL++T LD L+LR LALHLEDLWGGRVG L   N   +DPF++L HHRH+FWPLDPFR  S + +PEGFPAHPHRGFQTVTYVM  RGG +
Sbjct:  128 VQNGLIYTALDFLRLRKLALHLEDLWGGRVGVLQPPNQVESDPFIMLVHHRHTFWPLDPFRPISNMFVPEGFPAHPHRGFQTVTYVM--RGGMV 219          
BLAST of mRNA_H-elongata_contig115692.1241.1 vs. uniprot
Match: A0A812J990_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812J990_9DINO)

HSP 1 Score: 107 bits (266), Expect = 7.600e-25
Identity = 53/91 (58.24%), Postives = 67/91 (73.63%), Query Frame = 1
Query:   31 GLLFTLLDLLQLRGLALHLEDLWGGRVGTLITNNPRATDPFVLLAHHRHSFWPLDPFRLASRLILPEGFPAHPHRGFQTVTYVMKVRGGCI 303
            GL++ LLDLL    +   LED +GGRV  ++  +  A+DPF+L+AHHRHSF   DPFR   RL+LPEGFPAHPHRGF+TVTYV+  RGG +
Sbjct:   72 GLVYILLDLLGKPKVGAWLEDRFGGRVCPMVLRDKAASDPFLLVAHHRHSFNAFDPFRHLFRLLLPEGFPAHPHRGFETVTYVL--RGGLV 160          
BLAST of mRNA_H-elongata_contig115692.1241.1 vs. uniprot
Match: A0A7S0N887_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N887_9CHLO)

HSP 1 Score: 105 bits (261), Expect = 1.450e-24
Identity = 51/87 (58.62%), Postives = 63/87 (72.41%), Query Frame = 1
Query:   22 ISAGLLFTLLDLLQLRGLALHLEDLWGGRVGTLITNNPRATDPFVLLAHHRHSFWPLDPFRLASRLILPEGFPAHPHRGFQTVTYVM 282
            +  G++F +LDLL+L  LA  LE  +GGRV  ++   P  TDPFVL  HHRHSFW  DP R   RL+LPEGFPAHPHRGF+TVTY++
Sbjct:  101 VVPGVIFIILDLLRLNELAAFLEHRFGGRVCPMMFT-PEQTDPFVLCVHHRHSFWWWDPVRPIFRLLLPEGFPAHPHRGFETVTYML 186          
BLAST of mRNA_H-elongata_contig115692.1241.1 vs. uniprot
Match: A0A7S4QCZ6_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4QCZ6_9DINO)

HSP 1 Score: 103 bits (258), Expect = 5.420e-24
Identity = 54/92 (58.70%), Postives = 66/92 (71.74%), Query Frame = 1
Query:   31 GLLFTLLDLLQLRGLA-LHLEDLWGGRVGTLITNNPRATDPFVLLAHHRHSFWPLDPFRLASRLILPEGFPAHPHRGFQTVTYVMKVRGGCI 303
            GL++ LLD +     A   LED +GGRV  +I  +   TDPF+L+AHHRHSF  LDPFR   RL+LPEGFPAHPHRGF+TVTYV+  RGG +
Sbjct:  105 GLVYILLDWITGNPKAGAKLEDRFGGRVCPMIFQDDSQTDPFLLVAHHRHSFGALDPFRFVFRLLLPEGFPAHPHRGFETVTYVL--RGGLV 194          
BLAST of mRNA_H-elongata_contig115692.1241.1 vs. uniprot
Match: A0A812K4J3_9DINO (Hypothetical protein n=2 Tax=unclassified Symbiodinium TaxID=279888 RepID=A0A812K4J3_9DINO)

HSP 1 Score: 103 bits (257), Expect = 5.950e-24
Identity = 53/92 (57.61%), Postives = 67/92 (72.83%), Query Frame = 1
Query:   31 GLLFTLLDLLQLR-GLALHLEDLWGGRVGTLITNNPRATDPFVLLAHHRHSFWPLDPFRLASRLILPEGFPAHPHRGFQTVTYVMKVRGGCI 303
            G+++ LLDLL  R  +   LED +GGRV  +I  +  A+DPF+L+AHHRHSF   DPFR   R +LPEGFPAHPHRGF+TVTYV+  RGG +
Sbjct:   77 GIVYILLDLLLGRPSVGAWLEDRFGGRVCPMIFRDTAASDPFLLVAHHRHSFNAFDPFRYLFRFLLPEGFPAHPHRGFETVTYVL--RGGLV 166          
BLAST of mRNA_H-elongata_contig115692.1241.1 vs. uniprot
Match: A0A812LFT3_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812LFT3_9DINO)

HSP 1 Score: 103 bits (256), Expect = 7.920e-24
Identity = 52/92 (56.52%), Postives = 67/92 (72.83%), Query Frame = 1
Query:   31 GLLFTLLDLLQLR-GLALHLEDLWGGRVGTLITNNPRATDPFVLLAHHRHSFWPLDPFRLASRLILPEGFPAHPHRGFQTVTYVMKVRGGCI 303
            G+++ LLDLL  + G+   LED +GGRV  +I  +   +DPF+L+AHHRHSF   DPFR   R +LPEGFPAHPHRGF+TVTYV+  RGG +
Sbjct:   76 GIVYILLDLLLGKPGVGAWLEDRFGGRVCPMIFRDTSVSDPFLLVAHHRHSFNAFDPFRYLFRFLLPEGFPAHPHRGFETVTYVL--RGGLV 165          
BLAST of mRNA_H-elongata_contig115692.1241.1 vs. uniprot
Match: A0A812XKZ7_SYMPI (PRN1 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812XKZ7_SYMPI)

HSP 1 Score: 102 bits (254), Expect = 1.600e-23
Identity = 52/92 (56.52%), Postives = 67/92 (72.83%), Query Frame = 1
Query:   31 GLLFTLLDLLQLR-GLALHLEDLWGGRVGTLITNNPRATDPFVLLAHHRHSFWPLDPFRLASRLILPEGFPAHPHRGFQTVTYVMKVRGGCI 303
            G+++ LLDLL  +  +   LED +GGRV  +I  +  A+DPF+L+AHHRHSF   DPFR   R +LPEGFPAHPHRGF+TVTYV+  RGG +
Sbjct:   78 GIVYILLDLLVGKPNVGAWLEDRFGGRVCPMIFRDTAASDPFLLVAHHRHSFNAFDPFRYLFRFLLPEGFPAHPHRGFETVTYVL--RGGLV 167          
BLAST of mRNA_H-elongata_contig115692.1241.1 vs. uniprot
Match: A0A7S0H265_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H265_9EUKA)

HSP 1 Score: 101 bits (251), Expect = 1.880e-23
Identity = 51/88 (57.95%), Postives = 62/88 (70.45%), Query Frame = 1
Query:   22 ISAGLLFTLLDLLQLRGLALHLEDLWGGRVGTLITNNPRATDPFVLLAHHRHSFWPLDPFRLASRLILPEGFPAHPHRGFQTVTYVMK 285
            ++ GL   LLD L  +GLA  LED  GGRV  +I +    T+PFVLL HHRHSF   DP R  S L++PEGFPAHPHRGF+T+TYV+K
Sbjct:   76 VTNGLGLLLLDALGQKGLARKLEDRIGGRVSPMILDYS-DTNPFVLLVHHRHSFTKFDPIRPLSNLVIPEGFPAHPHRGFETITYVLK 162          
BLAST of mRNA_H-elongata_contig115692.1241.1 vs. uniprot
Match: A0A1Q9DQN6_SYMMI (Putative ubiquitin-like-specific protease 1B n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9DQN6_SYMMI)

HSP 1 Score: 102 bits (254), Expect = 3.250e-23
Identity = 52/92 (56.52%), Postives = 67/92 (72.83%), Query Frame = 1
Query:   31 GLLFTLLDLLQLR-GLALHLEDLWGGRVGTLITNNPRATDPFVLLAHHRHSFWPLDPFRLASRLILPEGFPAHPHRGFQTVTYVMKVRGGCI 303
            G+++ LLDLL  +  +   LED +GGRV  +I  +  A+DPF+L+AHHRHSF   DPFR   R +LPEGFPAHPHRGF+TVTYV+  RGG +
Sbjct:  303 GIVYILLDLLLGKPSVGAWLEDRFGGRVCPMIFRDTAASDPFLLVAHHRHSFNAFDPFRYLFRFLLPEGFPAHPHRGFETVTYVL--RGGLV 392          
BLAST of mRNA_H-elongata_contig115692.1241.1 vs. uniprot
Match: A0A813BIS6_SYMMI (ULP1B protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813BIS6_SYMMI)

HSP 1 Score: 102 bits (254), Expect = 3.280e-23
Identity = 52/92 (56.52%), Postives = 67/92 (72.83%), Query Frame = 1
Query:   31 GLLFTLLDLLQLR-GLALHLEDLWGGRVGTLITNNPRATDPFVLLAHHRHSFWPLDPFRLASRLILPEGFPAHPHRGFQTVTYVMKVRGGCI 303
            G+++ LLDLL  +  +   LED +GGRV  +I  +  A+DPF+L+AHHRHSF   DPFR   R +LPEGFPAHPHRGF+TVTYV+  RGG +
Sbjct: 1278 GIVYILLDLLLGKPSVGAWLEDRFGGRVCPMIFRDTAASDPFLLVAHHRHSFNAFDPFRYLFRFLLPEGFPAHPHRGFETVTYVL--RGGLV 1367          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115692.1241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHH3_ECTSI2.300e-3667.02Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A812J990_9DINO7.600e-2558.24Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A7S0N887_9CHLO1.450e-2458.62Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A7S4QCZ6_9DINO5.420e-2458.70Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A812K4J3_9DINO5.950e-2457.61Hypothetical protein n=2 Tax=unclassified Symbiodi... [more]
A0A812LFT3_9DINO7.920e-2456.52Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A812XKZ7_SYMPI1.600e-2356.52PRN1 protein n=1 Tax=Symbiodinium pilosum TaxID=29... [more]
A0A7S0H265_9EUKA1.880e-2357.95Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A1Q9DQN6_SYMMI3.250e-2356.52Putative ubiquitin-like-specific protease 1B n=2 T... [more]
A0A813BIS6_SYMMI3.280e-2356.52ULP1B protein n=2 Tax=Symbiodinium TaxID=2949 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig115692contigH-elongata_contig115692:200..502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.0
Seed ortholog evalue1.2e-30
Seed eggNOG ortholog2880.D8LHH3
KEGG koko:K06911
EggNOG free text desc.quercetin 2,3-dioxygenase activity
EggNOG OGs2QQ5A@2759,COG1741@1
Ec32 ortholog descriptionPirin
Ec32 orthologEc-11_004080.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categorysignal peptide
Exons1
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929671.0214086-CDS-H-elongata_contig115692:199..5021622929671.0214086-CDS-H-elongata_contig115692:199..502Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115692 200..502 -
1691679113.6277351-CDS-H-elongata_contig115692:199..5021691679113.6277351-CDS-H-elongata_contig115692:199..502Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115692 200..502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig115692.1241.1prot_H-elongata_contig115692.1241.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig115692 200..502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig115692.1241.1

>prot_H-elongata_contig115692.1241.1 ID=prot_H-elongata_contig115692.1241.1|Name=mRNA_H-elongata_contig115692.1241.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
PPPPPPPISAGLLFTLLDLLQLRGLALHLEDLWGGRVGTLITNNPRATDP
FVLLAHHRHSFWPLDPFRLASRLILPEGFPAHPHRGFQTVTYVMKVRGGC
I
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mRNA from alignment at H-elongata_contig115692:200..502-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig115692.1241.1 ID=mRNA_H-elongata_contig115692.1241.1|Name=mRNA_H-elongata_contig115692.1241.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=303bp|location=Sequence derived from alignment at H-elongata_contig115692:200..502- (Himanthalia elongata Himel1 dioecious)
CCCCCCCCCCCCCCCCCCCCGATTTCCGCAGGGTTACTTTTCACGCTACT GGATCTCCTTCAACTCCGAGGGCTCGCTCTCCACCTCGAGGACCTGTGGG GGGGGCGCGTCGGGACGCTCATCACGAACAATCCCCGGGCAACGGACCCG TTTGTTCTTTTGGCCCATCACAGGCATAGCTTCTGGCCGCTTGACCCCTT CCGGCTAGCCTCCAGGCTCATCCTCCCCGAAGGGTTCCCTGCCCACCCGC ACCGAGGGTTTCAGACGGTCACCTATGTCATGAAGGTGAGAGGGGGCTGC ATA
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Coding sequence (CDS) from alignment at H-elongata_contig115692:200..502-

>mRNA_H-elongata_contig115692.1241.1 ID=mRNA_H-elongata_contig115692.1241.1|Name=mRNA_H-elongata_contig115692.1241.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig115692:200..502- (Himanthalia elongata Himel1 dioecious)
CCCCCCCCCCCCCCCCCCCCGATTTCCGCAGGGTTACTTTTCACGCTACT
GGATCTCCTTCAACTCCGAGGGCTCGCTCTCCACCTCGAGGACCTGTGGG
GGGGGCGCGTCGGGACGCTCATCACGAACAATCCCCGGGCAACGGACCCG
TTTGTTCTTTTGGCCCATCACAGGCATAGCTTCTGGCCGCTTGACCCCTT
CCGGCTAGCCTCCAGGCTCATCCTCCCCGAAGGGTTCCCTGCCCACCCGC
ACCGAGGGTTTCAGACGGTCACCTATGTCATGAAGGTGAGAGGGGGCTGC
ATACCCCCCCCCCCCCCCCCCCCGATTTCCGCAGGGTTACTTTTCACGCT
ACTGGATCTCCTTCAACTCCGAGGGCTCGCTCTCCACCTCGAGGACCTGT
GGGGGGGGCGCGTCGGGACGCTCATCACGAACAATCCCCGGGCAACGGAC
CCGTTTGTTCTTTTGGCCCATCACAGGCATAGCTTCTGGCCGCTTGACCC
CTTCCGGCTAGCCTCCAGGCTCATCCTCCCCGAAGGGTTCCCTGCCCACC
CGCACCGAGGGTTTCAGACGGTCACCTATGTCATGAAGGTGAGAGGGGGC
TGCATA
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