mRNA_H-elongata_contig115692.1241.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig115692.1241.1 vs. uniprot
Match: D8LHH3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHH3_ECTSI) HSP 1 Score: 137 bits (345), Expect = 2.300e-36 Identity = 63/94 (67.02%), Postives = 74/94 (78.72%), Query Frame = 1
Query: 22 ISAGLLFTLLDLLQLRGLALHLEDLWGGRVGTLITNNPRATDPFVLLAHHRHSFWPLDPFRLASRLILPEGFPAHPHRGFQTVTYVMKVRGGCI 303
+ GL++T LD L+LR LALHLEDLWGGRVG L N +DPF++L HHRH+FWPLDPFR S + +PEGFPAHPHRGFQTVTYVM RGG +
Sbjct: 128 VQNGLIYTALDFLRLRKLALHLEDLWGGRVGVLQPPNQVESDPFIMLVHHRHTFWPLDPFRPISNMFVPEGFPAHPHRGFQTVTYVM--RGGMV 219
BLAST of mRNA_H-elongata_contig115692.1241.1 vs. uniprot
Match: A0A812J990_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812J990_9DINO) HSP 1 Score: 107 bits (266), Expect = 7.600e-25 Identity = 53/91 (58.24%), Postives = 67/91 (73.63%), Query Frame = 1
Query: 31 GLLFTLLDLLQLRGLALHLEDLWGGRVGTLITNNPRATDPFVLLAHHRHSFWPLDPFRLASRLILPEGFPAHPHRGFQTVTYVMKVRGGCI 303
GL++ LLDLL + LED +GGRV ++ + A+DPF+L+AHHRHSF DPFR RL+LPEGFPAHPHRGF+TVTYV+ RGG +
Sbjct: 72 GLVYILLDLLGKPKVGAWLEDRFGGRVCPMVLRDKAASDPFLLVAHHRHSFNAFDPFRHLFRLLLPEGFPAHPHRGFETVTYVL--RGGLV 160
BLAST of mRNA_H-elongata_contig115692.1241.1 vs. uniprot
Match: A0A7S0N887_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N887_9CHLO) HSP 1 Score: 105 bits (261), Expect = 1.450e-24 Identity = 51/87 (58.62%), Postives = 63/87 (72.41%), Query Frame = 1
Query: 22 ISAGLLFTLLDLLQLRGLALHLEDLWGGRVGTLITNNPRATDPFVLLAHHRHSFWPLDPFRLASRLILPEGFPAHPHRGFQTVTYVM 282
+ G++F +LDLL+L LA LE +GGRV ++ P TDPFVL HHRHSFW DP R RL+LPEGFPAHPHRGF+TVTY++
Sbjct: 101 VVPGVIFIILDLLRLNELAAFLEHRFGGRVCPMMFT-PEQTDPFVLCVHHRHSFWWWDPVRPIFRLLLPEGFPAHPHRGFETVTYML 186
BLAST of mRNA_H-elongata_contig115692.1241.1 vs. uniprot
Match: A0A7S4QCZ6_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4QCZ6_9DINO) HSP 1 Score: 103 bits (258), Expect = 5.420e-24 Identity = 54/92 (58.70%), Postives = 66/92 (71.74%), Query Frame = 1
Query: 31 GLLFTLLDLLQLRGLA-LHLEDLWGGRVGTLITNNPRATDPFVLLAHHRHSFWPLDPFRLASRLILPEGFPAHPHRGFQTVTYVMKVRGGCI 303
GL++ LLD + A LED +GGRV +I + TDPF+L+AHHRHSF LDPFR RL+LPEGFPAHPHRGF+TVTYV+ RGG +
Sbjct: 105 GLVYILLDWITGNPKAGAKLEDRFGGRVCPMIFQDDSQTDPFLLVAHHRHSFGALDPFRFVFRLLLPEGFPAHPHRGFETVTYVL--RGGLV 194
BLAST of mRNA_H-elongata_contig115692.1241.1 vs. uniprot
Match: A0A812K4J3_9DINO (Hypothetical protein n=2 Tax=unclassified Symbiodinium TaxID=279888 RepID=A0A812K4J3_9DINO) HSP 1 Score: 103 bits (257), Expect = 5.950e-24 Identity = 53/92 (57.61%), Postives = 67/92 (72.83%), Query Frame = 1
Query: 31 GLLFTLLDLLQLR-GLALHLEDLWGGRVGTLITNNPRATDPFVLLAHHRHSFWPLDPFRLASRLILPEGFPAHPHRGFQTVTYVMKVRGGCI 303
G+++ LLDLL R + LED +GGRV +I + A+DPF+L+AHHRHSF DPFR R +LPEGFPAHPHRGF+TVTYV+ RGG +
Sbjct: 77 GIVYILLDLLLGRPSVGAWLEDRFGGRVCPMIFRDTAASDPFLLVAHHRHSFNAFDPFRYLFRFLLPEGFPAHPHRGFETVTYVL--RGGLV 166
BLAST of mRNA_H-elongata_contig115692.1241.1 vs. uniprot
Match: A0A812LFT3_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812LFT3_9DINO) HSP 1 Score: 103 bits (256), Expect = 7.920e-24 Identity = 52/92 (56.52%), Postives = 67/92 (72.83%), Query Frame = 1
Query: 31 GLLFTLLDLLQLR-GLALHLEDLWGGRVGTLITNNPRATDPFVLLAHHRHSFWPLDPFRLASRLILPEGFPAHPHRGFQTVTYVMKVRGGCI 303
G+++ LLDLL + G+ LED +GGRV +I + +DPF+L+AHHRHSF DPFR R +LPEGFPAHPHRGF+TVTYV+ RGG +
Sbjct: 76 GIVYILLDLLLGKPGVGAWLEDRFGGRVCPMIFRDTSVSDPFLLVAHHRHSFNAFDPFRYLFRFLLPEGFPAHPHRGFETVTYVL--RGGLV 165
BLAST of mRNA_H-elongata_contig115692.1241.1 vs. uniprot
Match: A0A812XKZ7_SYMPI (PRN1 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812XKZ7_SYMPI) HSP 1 Score: 102 bits (254), Expect = 1.600e-23 Identity = 52/92 (56.52%), Postives = 67/92 (72.83%), Query Frame = 1
Query: 31 GLLFTLLDLLQLR-GLALHLEDLWGGRVGTLITNNPRATDPFVLLAHHRHSFWPLDPFRLASRLILPEGFPAHPHRGFQTVTYVMKVRGGCI 303
G+++ LLDLL + + LED +GGRV +I + A+DPF+L+AHHRHSF DPFR R +LPEGFPAHPHRGF+TVTYV+ RGG +
Sbjct: 78 GIVYILLDLLVGKPNVGAWLEDRFGGRVCPMIFRDTAASDPFLLVAHHRHSFNAFDPFRYLFRFLLPEGFPAHPHRGFETVTYVL--RGGLV 167
BLAST of mRNA_H-elongata_contig115692.1241.1 vs. uniprot
Match: A0A7S0H265_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H265_9EUKA) HSP 1 Score: 101 bits (251), Expect = 1.880e-23 Identity = 51/88 (57.95%), Postives = 62/88 (70.45%), Query Frame = 1
Query: 22 ISAGLLFTLLDLLQLRGLALHLEDLWGGRVGTLITNNPRATDPFVLLAHHRHSFWPLDPFRLASRLILPEGFPAHPHRGFQTVTYVMK 285
++ GL LLD L +GLA LED GGRV +I + T+PFVLL HHRHSF DP R S L++PEGFPAHPHRGF+T+TYV+K
Sbjct: 76 VTNGLGLLLLDALGQKGLARKLEDRIGGRVSPMILDYS-DTNPFVLLVHHRHSFTKFDPIRPLSNLVIPEGFPAHPHRGFETITYVLK 162
BLAST of mRNA_H-elongata_contig115692.1241.1 vs. uniprot
Match: A0A1Q9DQN6_SYMMI (Putative ubiquitin-like-specific protease 1B n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9DQN6_SYMMI) HSP 1 Score: 102 bits (254), Expect = 3.250e-23 Identity = 52/92 (56.52%), Postives = 67/92 (72.83%), Query Frame = 1
Query: 31 GLLFTLLDLLQLR-GLALHLEDLWGGRVGTLITNNPRATDPFVLLAHHRHSFWPLDPFRLASRLILPEGFPAHPHRGFQTVTYVMKVRGGCI 303
G+++ LLDLL + + LED +GGRV +I + A+DPF+L+AHHRHSF DPFR R +LPEGFPAHPHRGF+TVTYV+ RGG +
Sbjct: 303 GIVYILLDLLLGKPSVGAWLEDRFGGRVCPMIFRDTAASDPFLLVAHHRHSFNAFDPFRYLFRFLLPEGFPAHPHRGFETVTYVL--RGGLV 392
BLAST of mRNA_H-elongata_contig115692.1241.1 vs. uniprot
Match: A0A813BIS6_SYMMI (ULP1B protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813BIS6_SYMMI) HSP 1 Score: 102 bits (254), Expect = 3.280e-23 Identity = 52/92 (56.52%), Postives = 67/92 (72.83%), Query Frame = 1
Query: 31 GLLFTLLDLLQLR-GLALHLEDLWGGRVGTLITNNPRATDPFVLLAHHRHSFWPLDPFRLASRLILPEGFPAHPHRGFQTVTYVMKVRGGCI 303
G+++ LLDLL + + LED +GGRV +I + A+DPF+L+AHHRHSF DPFR R +LPEGFPAHPHRGF+TVTYV+ RGG +
Sbjct: 1278 GIVYILLDLLLGKPSVGAWLEDRFGGRVCPMIFRDTAASDPFLLVAHHRHSFNAFDPFRYLFRFLLPEGFPAHPHRGFETVTYVL--RGGLV 1367 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115692.1241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig115692.1241.1 >prot_H-elongata_contig115692.1241.1 ID=prot_H-elongata_contig115692.1241.1|Name=mRNA_H-elongata_contig115692.1241.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp PPPPPPPISAGLLFTLLDLLQLRGLALHLEDLWGGRVGTLITNNPRATDPback to top mRNA from alignment at H-elongata_contig115692:200..502- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig115692.1241.1 ID=mRNA_H-elongata_contig115692.1241.1|Name=mRNA_H-elongata_contig115692.1241.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=303bp|location=Sequence derived from alignment at H-elongata_contig115692:200..502- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig115692:200..502- >mRNA_H-elongata_contig115692.1241.1 ID=mRNA_H-elongata_contig115692.1241.1|Name=mRNA_H-elongata_contig115692.1241.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig115692:200..502- (Himanthalia elongata Himel1 dioecious)back to top |