mRNA_H-elongata_contig115571.1229.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig115571.1229.1
Unique NamemRNA_H-elongata_contig115571.1229.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig115571.1229.1 vs. uniprot
Match: A0A6H5KP68_9PHAE (Eukaryotic translation initiation factor 3 subunit H n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KP68_9PHAE)

HSP 1 Score: 339 bits (870), Expect = 3.570e-111
Identity = 175/207 (84.54%), Postives = 189/207 (91.30%), Query Frame = 1
Query:  205 SLQENLSDNSVVILYDPVQTSKGQLMMKAYRLSKAFMRVYREKKNEVIKPSEILEELPIKIRNPGIINALVFDLQEGDRVDCDFDRLDLSTNPYLEKSLEFLCNWIDDLSNEQMKFNQYARNLQRQKL---EQARWLQKRKQTNDERRAAGDVPLPDDEFAFDKKMEMPNRMESLLISNQITAYCTQINKFAGSSFEKLFLAGSLQK 816
            S QENLSDNSVVILYDPVQT+ GQL +KAYRLSKAFMRVYREKKNEVIKPSEILEELPIKIRNPGIINAL+FDLQE DRVDCDFDRLDLSTNPYLEK+LEFLCNWIDDLSNEQ KFNQY RN+ RQK    +QAR LQKRKQ NDERRAAG+  LP+++ AFDKK++ PNRME LLISNQI+AYC+QINKFAGSSFEKLFLAGSLQK
Sbjct:  128 SYQENLSDNSVVILYDPVQTANGQLTIKAYRLSKAFMRVYREKKNEVIKPSEILEELPIKIRNPGIINALIFDLQEEDRVDCDFDRLDLSTNPYLEKNLEFLCNWIDDLSNEQQKFNQYTRNVARQKQACWDQARLLQKRKQQNDERRAAGEEALPEEDSAFDKKLDAPNRMEGLLISNQISAYCSQINKFAGSSFEKLFLAGSLQK 334          
BLAST of mRNA_H-elongata_contig115571.1229.1 vs. uniprot
Match: A0A836CJJ9_9STRA (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJJ9_9STRA)

HSP 1 Score: 288 bits (738), Expect = 4.000e-91
Identity = 144/205 (70.24%), Postives = 174/205 (84.88%), Query Frame = 1
Query:  211 QENLSDNSVVILYDPVQTSKGQLMMKAYRLSKAFMRVYREKKNEVIKPSEILEELPIKIRNPGIINALVFDLQE---GDRVDCDFDRLDLSTNPYLEKSLEFLCNWIDDLSNEQMKFNQYARNLQRQKLEQARWLQKRKQTNDERRAAGDVPLPDDEFAFDKKMEMPNRMESLLISNQITAYCTQINKFAGSSFEKLFLAGSLQK 816
            QENLSDN+VV+LYDPVQT++GQL +KAYRLSK FMR YRE+K++ IKPSEIL+ELPI+IRNPG++NALV+DLQ        +CDF+RLDLSTNPYLEK+LEFLC W+DDL+NEQ KF  Y R L +Q+ + ARW  +RK+ NDERRAAGD PLPDDE A D++ + PNRMESLLIS QI+AYC+QIN+F GSSFEKLFLAGSLQ+
Sbjct:  141 QENLSDNAVVVLYDPVQTARGQLTLKAYRLSKEFMRAYRERKSDHIKPSEILDELPIRIRNPGLVNALVYDLQGRGGAGSAECDFERLDLSTNPYLEKNLEFLCGWVDDLANEQWKFQAYTRTLLKQRHDAARWADRRKKANDERRAAGDEPLPDDE-AHDRRPDAPNRMESLLISTQISAYCSQINRFTGSSFEKLFLAGSLQR 344          
BLAST of mRNA_H-elongata_contig115571.1229.1 vs. uniprot
Match: A0A6V1NQH4_HETAK (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NQH4_HETAK)

HSP 1 Score: 229 bits (584), Expect = 2.890e-68
Identity = 118/207 (57.00%), Postives = 154/207 (74.40%), Query Frame = 1
Query:  205 SLQENLSDNSVVILYDPVQTSKGQLMMKAYRLSKAFMRVYREKKNEVIKPSEILEELPIKIRNPGIINALVFDLQEGDR-VDCDFDRLDLSTNPYLEKSLEFLCNWIDDLSNEQMKFNQYARNLQRQKLEQARWLQKRKQTNDERRAAGDVPLPD--DEFAFDKKMEMPNRMESLLISNQITAYCTQINKFAGSSFEKLFLAGSLQK 816
            S Q+NLSDNSVVILYDP+QTS G L +KA+RL++AFM   R   N  I+PSEILEELP++IRNPG++NALV+D+ +G    DC FDRLDL   PYLEK+LEFLC W+DDL+ E  KF Q+AR + +Q+ E+ RWL +R+  N+ERR  G+ PLP+  D   F +    P R+ESLLI+NQI  YC Q+N+F G+++ KL+LAGSL K
Sbjct:  125 SYQDNLSDNSVVILYDPIQTSNGTLTLKAFRLTQAFMERNRRGDNGFIRPSEILEELPVRIRNPGLLNALVYDVTQGPGGADCTFDRLDLGGRPYLEKNLEFLCAWVDDLAAEHQKFQQHARAVAKQRQERLRWLARRRHENEERRLDGEPPLPERPDPGMF-RAQGGPPRLESLLIANQINTYCAQVNRFTGAAYSKLYLAGSLHK 330          
BLAST of mRNA_H-elongata_contig115571.1229.1 vs. uniprot
Match: A0A7S2RWA1_9STRA (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RWA1_9STRA)

HSP 1 Score: 200 bits (508), Expect = 5.670e-57
Identity = 104/196 (53.06%), Postives = 139/196 (70.92%), Query Frame = 1
Query:  229 NSVVILYDPVQTSKGQLMMKAYRLSKAFMRVYREKKNEVIKPSEILEELPIKIRNPGIINALVFDLQEGDRVDCDFDRLDLSTNPYLEKSLEFLCNWIDDLSNEQMKFNQYARNLQRQKLEQARWLQKRKQTNDERRAAGDVPLPDDEFAFDKKMEMPNRMESLLISNQITAYCTQINKFAGSSFEKLFLAGSLQK 816
            NSVVILYDP+QT+KG+L ++A+RLS+ F+   +  KNE I P+EILEELPIKIRNPG+INAL+FDLQ  +R+DCDF+RLDLSTNP+LEK+LE+L  W+DDL+ EQ KF    R        + +W +K+                + E   +++ + P+RM SLL+SNQI+ YC+QI+ F G+SF KLFLAGSL K
Sbjct:  160 NSVVILYDPIQTAKGKLTLRAFRLSEKFVEAVKRDKNEFIPPAEILEELPIKIRNPGLINALLFDLQGNERLDCDFERLDLSTNPFLEKNLEYLSAWVDDLAQEQYKFQSEVR--------RDKWRRKQ----------------NPEGGAEEEFQAPDRMASLLVSNQISEYCSQIHHFTGASFGKLFLAGSLHK 331          
BLAST of mRNA_H-elongata_contig115571.1229.1 vs. uniprot
Match: A0A1W0A1S4_9STRA (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A1S4_9STRA)

HSP 1 Score: 180 bits (457), Expect = 1.410e-49
Identity = 94/203 (46.31%), Postives = 136/203 (67.00%), Query Frame = 1
Query:  211 QENLSDNSVVILYDPVQTSKGQLMMKAYRLSKAFMRVYREKKNEVIKPSEILEELPIKIRNPGIINALVFDLQEGDRVDCDFDRLDLSTNPYLEKSLEFLCNWIDDLSNEQMKFNQYARNLQRQKLEQARWLQKRKQTNDERRAAGDVPLPDDEFAFDKKMEMPNRMESLLISNQITAYCTQINKFAGSSFEKLFLAGSLQKS 819
            Q+NL DN++ I+YDP++T KG L +KAYRLS+ F   Y+ +  + I+ S ILEE+PI++ N  I    + +LQ+     C+FDRLDL+TN YLE SL+ L  W D+L+ E  KF  Y R + +Q+ + A WLQKR++ N  R+  G+  LP+++ A  K +  P+R+ESLLI+ Q+  YC  IN+FAG SF KLFLA +L K+
Sbjct:  122 QKNLGDNAICIVYDPLETMKGTLSIKAYRLSETFQEQYKTQALKDIRSSNILEEIPIQLNNSEIAQCYLLELQKQSA--CEFDRLDLATNTYLENSLQNLSAWADELAQEHYKFQGYERAVAKQRTQIASWLQKRREENKIRQDNGEDLLPEEDPALFKPLNQPSRLESLLITKQMNTYCDNINRFAGKSFHKLFLADTLHKN 322          
BLAST of mRNA_H-elongata_contig115571.1229.1 vs. uniprot
Match: A0A1V9YES0_9STRA (Eukaryotic translation initiation factor 3 subunit H n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9YES0_9STRA)

HSP 1 Score: 178 bits (451), Expect = 1.500e-48
Identity = 91/211 (43.13%), Postives = 139/211 (65.88%), Query Frame = 1
Query:  211 QENLSDNSVVILYDPVQTSKGQLMMKAYRLSKAFMRVYREK--------KNEVIKPSEILEELPIKIRNPGIINALVFDLQEGDRVDCDFDRLDLSTNPYLEKSLEFLCNWIDDLSNEQMKFNQYARNLQRQKLEQARWLQKRKQTNDERRAAGDVPLPDDEFAFDKKMEMPNRMESLLISNQITAYCTQINKFAGSSFEKLFLAGSLQKS 819
            Q+NL  N++ I+YDP++T KG L +KA+RL+ AF+  Y+ K        K + I+ + ++EE+PI++ N  ++   + +LQ     DC+FDRLDL+TN YLE SL+ L  W D+L+ E  KF  Y R + +Q+ +  +WL KR++ N  RR  G+ PLP+++ AF K +  P+R+ESLLI+ Q+  YC  IN++AG SF KLFLAG L ++
Sbjct:  126 QKNLGQNAICIVYDPLETMKGALSIKAFRLTDAFLETYKTKAFSKEGFAKGD-IRAATMIEEIPIELHNSDMVQCYLLELQAQKLGDCEFDRLDLATNAYLENSLQNLSAWADELAQEHYKFQGYERAVAKQRAQYQQWLLKRREENKLRRDNGEEPLPEEDPAFAKGLNQPSRLESLLITKQMNTYCDNINRYAGKSFHKLFLAGHLHQT 335          
BLAST of mRNA_H-elongata_contig115571.1229.1 vs. uniprot
Match: A0A7S1GHL4_CYCTE (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GHL4_CYCTE)

HSP 1 Score: 176 bits (445), Expect = 1.080e-47
Identity = 99/211 (46.92%), Postives = 129/211 (61.14%), Query Frame = 1
Query:  205 SLQENLSDNSVVILYDPVQTSKGQLMMKAYRLSKAFMRVYREKKNEVIKPSEILEELPIKIRNPGIINALVFDLQEGD-------RVDCDFDRLDLSTNPYLEKSLEFLCNWIDDLSNEQMKFNQYARNLQRQKLEQARWLQKRKQTNDERRAAGDVPLPDDEFAFDKKMEMPNRMESLLISNQITAYCTQINKFAGSSFEKLFLAGSLQK 816
            S Q  LS N+VV+LYDP+QTS G L++K +RL++  +++    KN  I PS+I EE+P+ I NPG+   L+ D+  G          D  FDRLDLSTNPYLEK LEFLC+W+DDL+ EQ KF  +ARN  R+   +     KR++  + +  +GD P                RMESLLISNQI  YC Q++KFAG  F KLFLAG L K
Sbjct:  138 SYQTELSPNAVVVLYDPMQTSHGNLVLKCFRLTEECLQLQSSGKNTFIDPSKIFEEIPVDISNPGLTQVLLSDVATGRYGTDIVATTDTTFDRLDLSTNPYLEKHLEFLCSWVDDLATEQQKFQYFARNATRRSDRR-----KREEDKENKWLSGDAP---------------KRMESLLISNQIRGYCDQMDKFAGGGFSKLFLAGGLHK 328          
BLAST of mRNA_H-elongata_contig115571.1229.1 vs. uniprot
Match: A0A6G0X4T5_9STRA (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X4T5_9STRA)

HSP 1 Score: 174 bits (440), Expect = 7.300e-47
Identity = 90/209 (43.06%), Postives = 133/209 (63.64%), Query Frame = 1
Query:  211 QENLSDNSVVILYDPVQTSKGQLMMKAYRLSKAFMRVYREK-------KNEVIKPSEILEELPIKIRNPGIINALVFDLQEGDRVDCDFDRLDLSTNPYLEKSLEFLCNWIDDLSNEQMKFNQYARNLQRQKLEQARWLQKRKQTNDERRAAGDVPLPDDEFAFDKKMEMPNRMESLLISNQITAYCTQINKFAGSSFEKLFLAGSLQK 816
            Q+NL +N++ I+YDPV+T+KG L +KA+RL+  F   Y+ +           I+ + +LEE+PI I N  ++   + DLQE    D DFDRLDL+TN Y E SL+ L  W D+L+ E  KF  Y R + +Q+ +  +++QKR++ N  RR  GD  LP+++    K +  P+R+ESLLI+ Q+  YC  IN++AG SF KLFLAG+L K
Sbjct:  134 QQNLGENAICIVYDPVETTKGSLALKAFRLTSTFCDQYKSQVFTKEGFAKADIRSTTLLEEIPIHINNSDLVKCYIADLQEQKLADSDFDRLDLATNGYFENSLQNLSAWADELAQEHYKFQGYERAMAKQRAQHQQFVQKRREDNKARRDNGDELLPEEDANAVKSLTQPSRLESLLITKQMNTYCENINRYAGKSFNKLFLAGNLHK 342          
BLAST of mRNA_H-elongata_contig115571.1229.1 vs. uniprot
Match: D8S8X2_SELML (Eukaryotic translation initiation factor 3 subunit H n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8S8X2_SELML)

HSP 1 Score: 172 bits (435), Expect = 3.820e-46
Identity = 99/212 (46.70%), Postives = 142/212 (66.98%), Query Frame = 1
Query:  211 QENLSDNSVVILYDPVQTSKGQLMMKAYRLSKAFMRVYR------EKKNEV-IKPSEILEELPIKIRNPGIINALVFDLQ-EGDRVDCDFDRLDLSTNPYLEKSLEFLCNWIDDLSNEQMKFNQYARNLQRQKLEQARWLQKRKQTNDERRAAGDVPLPDDE--FAFDKKMEMPNRMESLLISNQITAYCTQINKFAGSSFEKLFLAGSLQK 816
            QEN+    V I+YDP+++S+G L +KA RL+ +FM +YR      EK  E  +   +I EE+P++I N  +++AL+ +L+ +     CDFDRL LSTNP++EK+LEFL   +DDLS EQ KF  Y RNL RQ+ +Q  WLQKR+  N  RR AG+ PLP+D+   A  K +  P+R++S LI+NQI  YC+QIN FAG SF K++L  ++ +
Sbjct:  131 QENIK-RCVCIIYDPLRSSQGVLALKALRLTDSFMELYRSNNFNGEKLREKNVTWQDIFEEIPVRISNSALVSALMTELETDSPATQCDFDRLVLSTNPFMEKNLEFLIECMDDLSMEQQKFQFYYRNLARQQTQQQAWLQKRRAENMARRQAGEDPLPEDDPNNAVFKLIPEPSRLDSYLITNQIANYCSQINGFAGQSFSKIYLMDAVHE 341          
BLAST of mRNA_H-elongata_contig115571.1229.1 vs. uniprot
Match: A0A485KKB4_9STRA (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KKB4_9STRA)

HSP 1 Score: 171 bits (432), Expect = 1.020e-45
Identity = 90/209 (43.06%), Postives = 132/209 (63.16%), Query Frame = 1
Query:  211 QENLSDNSVVILYDPVQTSKGQLMMKAYRLSKAFMRVYREK-------KNEVIKPSEILEELPIKIRNPGIINALVFDLQEGDRVDCDFDRLDLSTNPYLEKSLEFLCNWIDDLSNEQMKFNQYARNLQRQKLEQARWLQKRKQTNDERRAAGDVPLPDDEFAFDKKMEMPNRMESLLISNQITAYCTQINKFAGSSFEKLFLAGSLQK 816
            Q+NL  N++ I+YDPV+T+KG L +KA+RL+  F   Y+ +           I+ S +LEE+PI I N  ++   + +L +    DC+FDRLDL+TN Y E SL  L  W D+L+ E  KF  Y R L +Q+ +  +++QKR++ N  RR  GD  LP+D+  F K +  P+R+ESLLI+ Q+  YC  IN++AG +F KLFLAG+L K
Sbjct:  132 QQNLGQNAICIVYDPVETTKGSLALKAFRLTSTFCDQYKSQVFTKEGFAKADIRSSTLLEEIPIHIHNSDLVKCYLEELHKQKLSDCEFDRLDLATNGYFESSLLNLSAWADELAQEHYKFQGYERALAKQRAQHQQFVQKRREENKIRRDNGDELLPEDDPNFFKNLNQPSRLESLLITKQMNTYCENINRYAGKNFNKLFLAGNLHK 340          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115571.1229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KP68_9PHAE3.570e-11184.54Eukaryotic translation initiation factor 3 subunit... [more]
A0A836CJJ9_9STRA4.000e-9170.24Eukaryotic translation initiation factor 3 subunit... [more]
A0A6V1NQH4_HETAK2.890e-6857.00Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2RWA1_9STRA5.670e-5753.06Eukaryotic translation initiation factor 3 subunit... [more]
A0A1W0A1S4_9STRA1.410e-4946.31Eukaryotic translation initiation factor 3 subunit... [more]
A0A1V9YES0_9STRA1.500e-4843.13Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S1GHL4_CYCTE1.080e-4746.92Eukaryotic translation initiation factor 3 subunit... [more]
A0A6G0X4T5_9STRA7.300e-4743.06Eukaryotic translation initiation factor 3 subunit... [more]
D8S8X2_SELML3.820e-4646.70Eukaryotic translation initiation factor 3 subunit... [more]
A0A485KKB4_9STRA1.020e-4543.06Eukaryotic translation initiation factor 3 subunit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig115571contigH-elongata_contig115571:96..2032 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score302.0
Seed ortholog evalue1.9e-79
Seed eggNOG ortholog2880.D7FNG1
Preferred nameEIF3H
KEGG rclassRC02636
KEGG koko:K03247,ko:K15744
KEGG ReactionR09655
KEGG Pathwayko00906,ko01100,ko01110,ko03013,ko05162,map00906,map01100,map01110,map03013,map05162
KEGG ModuleM00097
GOsGO:0001101,GO:0001944,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0003824,GO:0004843,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0005852,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006464,GO:0006508,GO:0006518,GO:0006807,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007507,GO:0008135,GO:0008150,GO:0008152,GO:0008180,GO:0008233,GO:0008234,GO:0008593,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009733,GO:0009737,GO:0009743,GO:0009744,GO:0009746,GO:0009749,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010646,GO:0010647,GO:0016282,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0023051,GO:0023056,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032991,GO:0033993,GO:0034248,GO:0034250,GO:0034284,GO:0034285,GO:0034286,GO:0034641,GO:0034645,GO:0036211,GO:0036459,GO:0042221,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045747,GO:0045948,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0048880,GO:0048882,GO:0048925,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0060322,GO:0065007,GO:0070011,GO:0070647,GO:0070993,GO:0071541,GO:0071704,GO:0072358,GO:0072359,GO:0080090,GO:0097159,GO:0097305,GO:0101005,GO:0140096,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1990904,GO:2000112
EggNOG free text desc.translation initiation factor activity
EggNOG OGsKOG1560@1,KOG1560@2759
EC5.2.1.12
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03012,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptioneukaryotic initiation factor 3H1 subunit
Ec32 orthologEc-01_005580.1
Exons3
Model size1313
Cds size543
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig115571.1229.1prot_H-elongata_contig115571.1229.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig115571 587..1753 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929669.6502159-UTR-H-elongata_contig115571:95..5861622929669.6502159-UTR-H-elongata_contig115571:95..586Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig115571 96..586 -
1691679113.1242259-UTR-H-elongata_contig115571:95..5861691679113.1242259-UTR-H-elongata_contig115571:95..586Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig115571 96..586 -
1622929669.7197094-UTR-H-elongata_contig115571:1753..20321622929669.7197094-UTR-H-elongata_contig115571:1753..2032Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig115571 1754..2032 -
1691679113.1724386-UTR-H-elongata_contig115571:1753..20321691679113.1724386-UTR-H-elongata_contig115571:1753..2032Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig115571 1754..2032 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929669.670521-CDS-H-elongata_contig115571:586..7181622929669.670521-CDS-H-elongata_contig115571:586..718Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115571 587..718 -
1691679113.1442869-CDS-H-elongata_contig115571:586..7181691679113.1442869-CDS-H-elongata_contig115571:586..718Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115571 587..718 -
1622929669.6859527-CDS-H-elongata_contig115571:1004..12651622929669.6859527-CDS-H-elongata_contig115571:1004..1265Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115571 1005..1265 -
1691679113.1543536-CDS-H-elongata_contig115571:1004..12651691679113.1543536-CDS-H-elongata_contig115571:1004..1265Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115571 1005..1265 -
1622929669.7025871-CDS-H-elongata_contig115571:1603..17531622929669.7025871-CDS-H-elongata_contig115571:1603..1753Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115571 1604..1753 -
1691679113.1623282-CDS-H-elongata_contig115571:1603..17531691679113.1623282-CDS-H-elongata_contig115571:1603..1753Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115571 1604..1753 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig115571.1229.1

>prot_H-elongata_contig115571.1229.1 ID=prot_H-elongata_contig115571.1229.1|Name=mRNA_H-elongata_contig115571.1229.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=181bp
MMKAYRLSKAFMRVYREKKNEVIKPSEILEELPIKIRNPGIINALVFDLQ
EGDRVDCDFDRLDLSTNPYLEKSLEFLCNWIDDLSNEQMKFNQYARNLQR
QKLEQARWLQKRKQTNDERRAAGDVPLPDDEFAFDKKMEMPNRMESLLIS
NQITAYCTQINKFAGSSFEKLFLAGSLQKS*
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mRNA from alignment at H-elongata_contig115571:96..2032-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig115571.1229.1 ID=mRNA_H-elongata_contig115571.1229.1|Name=mRNA_H-elongata_contig115571.1229.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1937bp|location=Sequence derived from alignment at H-elongata_contig115571:96..2032- (Himanthalia elongata Himel1 dioecious)
TTAAGTAGCGTAACGTTTGTCAATTATCTTCTCGTGTGCGGGCCGCCCCG AATGCTGTTTCCGACCCTTGCTCCTCCCGCGATCATGTGGAAAAATTCTC CTTCCTTCCGATGACGCGTGGTCGGTCGGTTAACAGCTAAGACGTGCGAA ACTTGACCCCCTCTCCGCCATCCGCCATCCGCCATCCCCCTGTGAACGTC GCCATCGCTTCAGGAAAACCTGAGCGATAACTCAGTAGTGATCCTGTATG ATCCCGTTCAGACGTCGAAGGGTCAGCTGATGATGAAGGCATACCGGTTG TCGAAGGCGTTTATGCGGGTGTACCGCGAAAAGAAAAACGAGGTCATCAA GCCGTCGGAGATTCTAGAAGAGCTGCCTATCAAGATCCGGAACCCGGGCA TTATCAACGCCCTGGTTTTTGACCTTCAGGTTCTGATGTTGGTTTTGCTC TCTTTTTGTTGCGTGTGTGTATTCTCTCTGTGTGTATGGTAGCTCAGACA ACCATTCGGAGGCCTGGTCTGATAGATCAGTACTCGTAGCGTCTTTTCGG GAATGCGCTCCGAAATCACTTTCCCAGATAATGCCTCCTCGAGGGTGTTA CATTTGTTTATTTTCTTCTTTTTCCTTCTCGAGGGTGTTGCATATATTTA TTTTCCTCGTTTTTCTTTTCTCGACCCTGGTGCCATTTCCTTCTCGAGGG TTTTGCATATATTTAGTTTCCTCCTTTTTCTTTTCTCGACCCTGGTGCCA TTTTTTTTTCTCAAAAGGAAGGAGATCGCGTGGACTGCGACTTCGACCGG CTGGATTTGTCGACCAACCCATACCTCGAAAAAAGCCTTGAGTTCCTGTG CAATTGGATAGACGACCTCTCCAACGAGCAGATGAAGTTCAACCAGTACG CGCGAAACTTGCAGCGCCAGAAGCTGGAACAGGCGCGATGGCTCCAGAAG CGCAAGCAGACGAACGACGAGCGACGGGCGGCGGGCGACGTCCCTCTCCC CGACGACGAGTTCGCGTTCGACAAGAAGGTAAGGCAAGGCAGAGAGAAAT AAATAAATAAATAAAAAACAAGCTTGATTCATGGAGAGCAAGGGTGCAAT ATACGACGACGAGGTTGCTTGATCGCGGGAAAGGCCCACGCGTGGAAAGT AACTCCGTAGCTGTCTGGCAGAGCGTGCGCTCGCAGGAAACAAAGGTTGC GACTTCGATATTGACTTCGAACCTTGAAACCCGTGCTCCGTTGCCCTCCT CCCCCTTCCCCATACCCTCCTTTCGGTTTTCGCGTTTCCGTTGAAAACCA ACCGGTTACCGCAGATGGAAATGCCGAATCGCATGGAATCGCTGCTGATC TCGAACCAGATTACCGCGTACTGTACCCAGATCAACAAGTTCGCGGGATC TTCTTTCGAGAAGCTTTTCCTTGCCGGCTCCCTCCAGAAGTCGTGAAAGA GACTTTGTGGCCATTTTTTATCCCTCATTACGAATGAATATGTGGTCGTA AATGCTAGCTAGGTGTGCGCGTGTTAGCAAGATATTCAGCTCCTTAGCCG TGGGCCAAGTTTGTGTGCCGCTCGACCTTGATCTTGCTTTGTTCGGGCGA TCGTGGCAAGTGCTAAGCGCCCAAGATCTTCTCGGTGCCGGTTAGGGGTC GTGGGTGATTTCACGAAAAGCAACGTTGATTTCCCGCAAATTGTGGAGGG GGTTTTCGCCGAGCGGTTACTAGGCTCTTCGTCCGAAGGGAATGCCTCCT TCGCCAAACGCTGAATGGAACAAAGCATTTGAATTGGATTGAAACGTCCA CTCTACGTCATGAATCGAAGAGATTTGGATAGATAATATTCGAGAGAGCT CACGGGACTTGTTTCTCTTCCACAATACTAATAGTAGGATATTTTCGTCA GCCATAATGTACGTACCGGTACCGGTATGTATGGTCA
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Coding sequence (CDS) from alignment at H-elongata_contig115571:96..2032-

>mRNA_H-elongata_contig115571.1229.1 ID=mRNA_H-elongata_contig115571.1229.1|Name=mRNA_H-elongata_contig115571.1229.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1086bp|location=Sequence derived from alignment at H-elongata_contig115571:96..2032- (Himanthalia elongata Himel1 dioecious)
ATGATGAAGGCATACCGGTTGTCGAAGGCGTTTATGCGGGTGTACCGCGA
AAAGAAAAACGAGGTCATCAAGCCGTCGGAGATTCTAGAAGAGCTGCCTA
TCAAGATCCGGAACCCGGGCATTATCAACGCCCTGGTTTTTGACCTTCAG
ATGATGAAGGCATACCGGTTGTCGAAGGCGTTTATGCGGGTGTACCGCGA
AAAGAAAAACGAGGTCATCAAGCCGTCGGAGATTCTAGAAGAGCTGCCTA
TCAAGATCCGGAACCCGGGCATTATCAACGCCCTGGTTTTTGACCTTCAG
GAAGGAGATCGCGTGGACTGCGACTTCGACCGGCTGGATTTGTCGACCAA
CCCATACCTCGAAAAAAGCCTTGAGTTCCTGTGCAATTGGATAGACGACC
TCTCCAACGAGCAGATGAAGTTCAACCAGTACGCGCGAAACTTGCAGCGC
CAGAAGCTGGAACAGGCGCGATGGCTCCAGAAGCGCAAGCAGACGAACGA
CGAGCGACGGGCGGCGGGCGACGTCCCTCTCCCCGACGACGAGTTCGCGT
TCGACAAGAAGGAAGGAGATCGCGTGGACTGCGACTTCGACCGGCTGGAT
TTGTCGACCAACCCATACCTCGAAAAAAGCCTTGAGTTCCTGTGCAATTG
GATAGACGACCTCTCCAACGAGCAGATGAAGTTCAACCAGTACGCGCGAA
ACTTGCAGCGCCAGAAGCTGGAACAGGCGCGATGGCTCCAGAAGCGCAAG
CAGACGAACGACGAGCGACGGGCGGCGGGCGACGTCCCTCTCCCCGACGA
CGAGTTCGCGTTCGACAAGAAGATGGAAATGCCGAATCGCATGGAATCGC
TGCTGATCTCGAACCAGATTACCGCGTACTGTACCCAGATCAACAAGTTC
GCGGGATCTTCTTTCGAGAAGCTTTTCCTTGCCGGCTCCCTCCAGAAGTC
GTGAATGGAAATGCCGAATCGCATGGAATCGCTGCTGATCTCGAACCAGA
TTACCGCGTACTGTACCCAGATCAACAAGTTCGCGGGATCTTCTTTCGAG
AAGCTTTTCCTTGCCGGCTCCCTCCAGAAGTCGTGA
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