mRNA_H-elongata_contig114996.1196.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114996.1196.1
Unique NamemRNA_H-elongata_contig114996.1196.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig114996.1196.1 vs. uniprot
Match: A0A6H5K541_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K541_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 7.610e-30
Identity = 67/144 (46.53%), Postives = 86/144 (59.72%), Query Frame = 1 
Query:    7 GMRVVGVPVGTEQFQRDFLQKAVNGEPAELVRALVPIEDAQASFQILCLYATSRLSYLLRTVPPFLTCQAAANYDALVEWALASIIAGDGATAAGLPTPEE----------------ALKQAHLPIREGGLGLTSRSSIRGAAY 390
            GM +VGVPVGTE FQR F+     G PAEL+R L  ++D QAS+Q+L L    RL +LLRT+ P +T  AA  +D L+ WA++ I+ G  A   G+PT EE                A  Q HLPIREGGLG+TS   IR +A+
Sbjct:  125 GMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNTAAREHDNLMIWAVSKIVLGKMANTVGIPTVEEVRANPEKSEVDFFKDSARAQVHLPIREGGLGITSSVLIRESAF 268
[Close]
BLAST of mRNA_H-elongata_contig114996.1196.1 vs. uniprot
Match: A0A6H5KFL6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFL6_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.120e-28
Identity = 62/144 (43.06%), Postives = 88/144 (61.11%), Query Frame = 1 
Query:   10 MRVVGVPVGTEQFQRDFLQKAVNGEPAELVRALVPIEDAQASFQILCLYATSRLSYLLRTVPPFLTCQAAANYDALVEWALASIIAGDGATAAGLPTPEE-----------------ALKQAHLPIREGGLGLTSRSSIRGAAY 390
            M VVG+PVGTE+FQR+F+ K   G+PAEL+  L  ++D QAS+Q+L L    RL +LLRT+ P +T  AA  +D ++ WA++ I+ G  A +  +PT +E                 A  Q HLP+REGGLG+TS   IR +A+
Sbjct:    1 MPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAF 144
[Close]
BLAST of mRNA_H-elongata_contig114996.1196.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 3.220e-28
Identity = 67/144 (46.53%), Postives = 86/144 (59.72%), Query Frame = 1 
Query:    7 GMRVVGVPVGTEQFQRDFLQKAVNGEPAELVRALVPIEDAQASFQILCLYATSRLSYLLRTVPPFLTCQAAANYDALVEWALASIIAGDGATAAGLPTPEE----------------ALKQAHLPIREGGLGLTSRSSIRGAAY 390
            GM +VGVPVGTE FQR F+     G PAEL+R L  ++D QAS+Q+L L    RL +LLRT+ P +T  AA  +D L+ WA++ I+ G  A   G+PT EE                A  Q HLPIREGGLG+TS   IR +A+
Sbjct:  426 GMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNTAAREHDNLMIWAVSKIVLGKMANTVGIPTVEEVRANPEKSEVDFFKDSARAQVHLPIREGGLGITSSVLIRESAF 569
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BLAST of mRNA_H-elongata_contig114996.1196.1 vs. uniprot
Match: A0A6H5JLD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD7_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 9.980e-28
Identity = 62/145 (42.76%), Postives = 88/145 (60.69%), Query Frame = 1 
Query:    7 GMRVVGVPVGTEQFQRDFLQKAVNGEPAELVRALVPIEDAQASFQILCLYATSRLSYLLRTVPPFLTCQAAANYDALVEWALASIIAGDGATAAGLPTPEE-----------------ALKQAHLPIREGGLGLTSRSSIRGAAY 390
            GM VVG+P GTE+FQR+F+ K   G+PAEL+  L  ++D QAS+Q+L L    RL +LLRT+ P +T  AA  +D ++ WA++ I+ G  A +  +PT +E                 A  Q HLP+REGGLG+TS   IR +A+
Sbjct:   92 GMPVVGIPAGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAF 236
[Close]
BLAST of mRNA_H-elongata_contig114996.1196.1 vs. uniprot
Match: A0A6H5JL76_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL76_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.690e-27
Identity = 65/144 (45.14%), Postives = 83/144 (57.64%), Query Frame = 1 
Query:    7 GMRVVGVPVGTEQFQRDFLQKAVNGEPAELVRALVPIEDAQASFQILCLYATSRLSYLLRTVPPFLTCQAAANYDALVEWALASIIAGDGATAAGLPTPEE----------------ALKQAHLPIREGGLGLTSRSSIRGAAY 390
            GM +VGVPVGTE FQR F+     G PAEL+R L  ++D QAS+Q+L L    RL +LLRT  P +T  AA  +D L+ WA++ I+ G  A   G+PT EE                A  Q HLPIREGGL +T    IR +A+
Sbjct:   92 GMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRTTAPSITSTAAREHDNLMIWAVSKIVLGKMANTVGIPTVEEVRANPEKSEVDFFKDSARAQVHLPIREGGLRITCSVLIRESAF 235
[Close]
BLAST of mRNA_H-elongata_contig114996.1196.1 vs. uniprot
Match: A0A6H5JP77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP77_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 4.970e-27
Identity = 62/140 (44.29%), Postives = 84/140 (60.00%), Query Frame = 1 
Query:   10 MRVVGVPVGTEQFQRDFLQKAVNGEPAELVRALVPIEDAQASFQILCLYATSRLSYLLRTVPPFLTCQAAANYDALVEWALASIIAGDGATAAGLPTPEE-----------------ALKQAHLPIREGGLGLTSRSSIR 378
            M VVG+PVGTE+FQR F+ K   G+PA+L+  LV ++D QAS+Q+L L    RL +LLRT+ P  T  AA  +D L+ WA++ I+ G  A +  +PT +E                 A  Q HLP+REGGLG+TS   IR
Sbjct:    1 MPVVGIPVGTEEFQRKFVSKFARGDPADLILRLVTLDDPQASYQLLRLSGVPRLFHLLRTITPSFTISAAREHD-LMMWAMSKIVLGKMADSMRIPTDKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIR 139
[Close]
BLAST of mRNA_H-elongata_contig114996.1196.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 6.330e-27
Identity = 63/145 (43.45%), Postives = 89/145 (61.38%), Query Frame = 1 
Query:    7 GMRVVGVPVGTEQFQRDFLQKAVNGEPAELVRALVPIEDAQASFQILCLYATSRLSYLLRTVPPFLTCQAAANYDALVEWALASIIAGDGATAAGLPTPEE-----------------ALKQAHLPIREGGLGLTSRSSIRGAAY 390
            GM VVG+PVGTE+FQR+F+ K   G+PAEL+  L  ++D QAS+Q+L L    RL +LLRT+ P +T  AA  +D ++ WA++ I+ G  A +  +PT +E                 A  Q HLP+REGGLG+TS   IR +A+
Sbjct:  426 GMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAF 570
[Close]
BLAST of mRNA_H-elongata_contig114996.1196.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 6.450e-27
Identity = 63/145 (43.45%), Postives = 89/145 (61.38%), Query Frame = 1 
Query:    7 GMRVVGVPVGTEQFQRDFLQKAVNGEPAELVRALVPIEDAQASFQILCLYATSRLSYLLRTVPPFLTCQAAANYDALVEWALASIIAGDGATAAGLPTPEE-----------------ALKQAHLPIREGGLGLTSRSSIRGAAY 390
            GM VVG+PVGTE+FQR+F+ K   G+PAEL+  L  ++D QAS+Q+L L    RL +LLRT+ P +T  AA  +D ++ WA++ I+ G  A +  +PT +E                 A  Q HLP+REGGLG+TS   IR +A+
Sbjct:  426 GMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAF 570
[Close]
BLAST of mRNA_H-elongata_contig114996.1196.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 6.490e-27
Identity = 63/145 (43.45%), Postives = 89/145 (61.38%), Query Frame = 1 
Query:    7 GMRVVGVPVGTEQFQRDFLQKAVNGEPAELVRALVPIEDAQASFQILCLYATSRLSYLLRTVPPFLTCQAAANYDALVEWALASIIAGDGATAAGLPTPEE-----------------ALKQAHLPIREGGLGLTSRSSIRGAAY 390
            GM VVG+PVGTE+FQR+F+ K   G+PAEL+  L  ++D QAS+Q+L L    RL +LLRT+ P +T  AA  +D ++ WA++ I+ G  A +  +PT +E                 A  Q HLP+REGGLG+TS   IR +A+
Sbjct:  274 GMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAF 418
[Close]
BLAST of mRNA_H-elongata_contig114996.1196.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.180e-26
Identity = 64/144 (44.44%), Postives = 85/144 (59.03%), Query Frame = 1 
Query:    7 GMRVVGVPVGTEQFQRDFLQKAVNGEPAELVRALVPIEDAQASFQILCLYATSRLSYLLRTVPPFLTCQAAANYDALVEWALASIIAGDGATAAGLPTPEE----------------ALKQAHLPIREGGLGLTSRSSIRGAAY 390
            GM +VGVPVGTE FQR F+     G PAEL+  L  ++D Q S+Q+L +    RL +LLRT+ P +T  AA  +D+L+ WA++ I+ G  A   G+PT EE                A  Q HLPIREGGLG+TS   IR +A+
Sbjct:  274 GMAIVGVPVGTECFQRSFVTNFARGIPAELIPRLSTLDDPQTSYQLLRMSGVPRLFHLLRTIAPSITNTAAREHDSLMIWAVSKIVLGKMANTVGIPTVEEVPANPEKSEVDFFKDSARAQVHLPIREGGLGITSSVLIRESAF 417
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114996.1196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K541_9PHAE7.610e-3046.53Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KFL6_9PHAE1.120e-2843.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGJ4_9PHAE3.220e-2846.53Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLD7_9PHAE9.980e-2842.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL76_9PHAE1.690e-2745.14Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP77_9PHAE4.970e-2744.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCM0_9PHAE6.330e-2743.45Reverse transcriptase domain-containing protein (F... [more]
A0A6H5LN63_9PHAE6.450e-2743.45Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K1H0_9PHAE6.490e-2743.45Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KSY9_9PHAE1.180e-2644.44Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114996contigH-elongata_contig114996:771..1211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size390
Cds size381
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114996.1196.1prot_H-elongata_contig114996.1196.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114996 771..1202 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929665.6879513-CDS-H-elongata_contig114996:770..8511622929665.6879513-CDS-H-elongata_contig114996:770..851Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114996 771..851 -
1691679111.3302073-CDS-H-elongata_contig114996:770..8511691679111.3302073-CDS-H-elongata_contig114996:770..851Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114996 771..851 -
1622929665.704016-CDS-H-elongata_contig114996:902..12021622929665.704016-CDS-H-elongata_contig114996:902..1202Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114996 903..1202 -
1691679111.3404293-CDS-H-elongata_contig114996:902..12021691679111.3404293-CDS-H-elongata_contig114996:902..1202Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114996 903..1202 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929665.7213554-UTR-H-elongata_contig114996:1202..12111622929665.7213554-UTR-H-elongata_contig114996:1202..1211Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig114996 1203..1211 -
1691679111.3488765-UTR-H-elongata_contig114996:1202..12111691679111.3488765-UTR-H-elongata_contig114996:1202..1211Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig114996 1203..1211 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114996.1196.1

>prot_H-elongata_contig114996.1196.1 ID=prot_H-elongata_contig114996.1196.1|Name=mRNA_H-elongata_contig114996.1196.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
MRVVGVPVGTEQFQRDFLQKAVNGEPAELVRALVPIEDAQASFQILCLYA
TSRLSYLLRTVPPFLTCQAAANYDALVEWALASIIAGDGATAAGLPTPEE
ALKQAHLPIREGGLGLTSRSSIRGAAY
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mRNA from alignment at H-elongata_contig114996:771..1211-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114996.1196.1 ID=mRNA_H-elongata_contig114996.1196.1|Name=mRNA_H-elongata_contig114996.1196.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=441bp|location=Sequence derived from alignment at H-elongata_contig114996:771..1211- (Himanthalia elongata Himel1 dioecious)
CGACAGGGGATGAGGGTTGTTGGAGTACCAGTTGGAACAGAACAGTTCCA
GCGTGATTTCTTACAGAAGGCGGTTAATGGAGAGCCAGCTGAGCTTGTGA
GGGCGCTGGTCCCGATCGAGGATGCCCAAGCGAGCTTCCAGATCTTGTGC
TTATATGCCACTTCTCGCCTTTCATATCTCCTTCGAACAGTCCCGCCCTT
CCTCACGTGCCAAGCTGCAGCAAACTACGACGCCTTGGTGGAGTGGGCGT
TGGCATCTATCATAGCTGGTGACGGAGCTACCGCGGCAGGGCTACCAACC
CCAGAGGAAGTAGCCCACGACCCCATTGTGTGCCAAAATCAGACCGACCT
AGGGCACGAGGCCCTAAAGCAGGCCCACCTGCCAATCCGAGAAGGCGGCC
TTGGGCTTACCAGCAGGAGCTCCATCAGAGGCGCGGCATAT
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Coding sequence (CDS) from alignment at H-elongata_contig114996:771..1211-

>mRNA_H-elongata_contig114996.1196.1 ID=mRNA_H-elongata_contig114996.1196.1|Name=mRNA_H-elongata_contig114996.1196.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig114996:771..1211- (Himanthalia elongata Himel1 dioecious)
ATGAGGGTTGTTGGAGTACCAGTTGGAACAGAACAGTTCCAGCGTGATTT
CTTACAGAAGGCGGTTAATGGAGAGCCAGCTGAGCTTGTGAGGGCGCTGG
TCCCGATCGAGGATGCCCAAGCGAGCTTCCAGATCTTGTGCTTATATGCC
ACTTCTCGCCTTTCATATCTCCTTCGAACAGTCCCGCCCTTCCTCACGTG
CCAAGCTGCAGCAAACTACGACGCCTTGGTGGAGTGGGCGTTGGCATCTA
TCATAGCTGGTGACGGAGCTACCGCGGCAGGGCTACCAACCCCAGAGGAA
ATGAGGGTTGTTGGAGTACCAGTTGGAACAGAACAGTTCCAGCGTGATTT
CTTACAGAAGGCGGTTAATGGAGAGCCAGCTGAGCTTGTGAGGGCGCTGG
TCCCGATCGAGGATGCCCAAGCGAGCTTCCAGATCTTGTGCTTATATGCC
ACTTCTCGCCTTTCATATCTCCTTCGAACAGTCCCGCCCTTCCTCACGTG
CCAAGCTGCAGCAAACTACGACGCCTTGGTGGAGTGGGCGTTGGCATCTA
TCATAGCTGGTGACGGAGCTACCGCGGCAGGGCTACCAACCCCAGAGGAA
GCCCTAAAGCAGGCCCACCTGCCAATCCGAGAAGGCGGCCTTGGGCTTAC
CAGCAGGAGCTCCATCAGAGGCGCGGCATATGCCCTAAAGCAGGCCCACC
TGCCAATCCGAGAAGGCGGCCTTGGGCTTACCAGCAGGAGCTCCATCAGA
GGCGCGGCATAT
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