mRNA_H-elongata_contig114810.1182.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig114810.1182.1 vs. uniprot
Match: D7FU80_ECTSI (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU80_ECTSI) HSP 1 Score: 336 bits (861), Expect = 1.740e-103 Identity = 173/210 (82.38%), Postives = 192/210 (91.43%), Query Frame = 1
Query: 1 ASQNISTPIITAKLVQDNSKTSARVVKAKIEKTTLGQVSVYMKEVFSATECFISIKLDMETIQDLHLDVTVHSVRQSILKGTYGENRPKILRDLKPQHVIVSAGGHKIKVMPPELTSLKSLRAVETVRPKTFFVLQTLKAVLPGVIVQGIPSVNRAVINVQEPDASAPPGAGSAPQERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEV 630
AS+NISTPIITAKLVQD+SKTSARVVKAKIEKTTLGQV+VYMKEVFSA+ECFI+IKLDM +QDLHLD+ VH+VR SILKG +GE RP++LRDLKPQ+V++S GGHKIKVMPPEL+ KS RA ETVRPKTFFVLQ LKAVLPGVIVQGIPSVNRAVINVQE + A +G+AP+ERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEV
Sbjct: 1185 ASKNISTPIITAKLVQDDSKTSARVVKAKIEKTTLGQVAVYMKEVFSASECFIAIKLDMHAVQDLHLDINVHTVRHSILKGNFGETRPRVLRDLKPQNVVISGGGHKIKVMPPELSGAKSARAAETVRPKTFFVLQALKAVLPGVIVQGIPSVNRAVINVQENSSGA--ASGAAPKERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEV 1392
BLAST of mRNA_H-elongata_contig114810.1182.1 vs. uniprot
Match: A0A7S1D4Y3_CYCTE (DNA-directed RNA polymerase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D4Y3_CYCTE) HSP 1 Score: 197 bits (501), Expect = 3.270e-58 Identity = 112/211 (53.08%), Postives = 147/211 (69.67%), Query Frame = 1
Query: 1 ASQNISTPIITAKLVQDNSKTSARVVKAKIEKTTLGQVSVYMKEVFSATECFISIKLDMETIQDLHLDVTVHSVRQSILKGTYGENRPKILRDLKPQHVIVSAGG-HKIKVMPPELTSLKSLRAVETVRPKTFFVLQTLKAVLPGVIVQGIPSVNRAVINVQEPDASAPPGAGSAPQERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEV 630
AS+ ISTPIITAKL QD++K AR+VKA IEKTTLG++S ++KEV+S+ +C+IS++LDMETI+ L L++ ++VR+SIL G G+ R +LR LK Q + V G K++V P S ++ P TFFV+Q LK LP VIVQGIPSVNRAVIN ++ + YHLLVEGYGLA VMG+PG+DG+ T +NHIIEV
Sbjct: 73 ASKLISTPIITAKLDQDDNKVGARIVKAGIEKTTLGEISAHIKEVYSSGKCYISVQLDMETIEQLKLNIDANTVRRSILYGARGQTRAPVLRILKEQSIKVKRGSTSKLRVYLPSQPESAS----SSIPPTTFFVMQALKVTLPQVIVQGIPSVNRAVINEEDKGG----------RTSYHLLVEGYGLAEVMGSPGVDGSHTTTNHIIEV 269
BLAST of mRNA_H-elongata_contig114810.1182.1 vs. uniprot
Match: A0A7S3PXX2_9STRA (DNA-directed RNA polymerase subunit n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PXX2_9STRA) HSP 1 Score: 207 bits (527), Expect = 3.690e-58 Identity = 117/211 (55.45%), Postives = 146/211 (69.19%), Query Frame = 1
Query: 1 ASQNISTPIITAKLVQDNSKTSARVVKAKIEKTTLGQVSVYMKEVFSATECFISIKLDMETIQDLHLDVTVHSVRQSILKGTYGENRPKILRDLKPQHVIVSAGGH-KIKVMPPELTSLKSLRAVETVRPKTFFVLQTLKAVLPGVIVQGIPSVNRAVINVQEPDASAPPGAGSAPQERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEV 630
AS+NISTPIITA+LVQDN+K ARVVKA IEKTTLGQVS Y+KEV++ ++C+IS++LD++ I L L + V+SVR+SILKG G RP ILR LK HV V G K+++ PE + P +F +Q LK LP VIVQGIPSVNRAVIN ++ + + YHLLVEGYGLA VMG+PGIDG RT +NH+IEV
Sbjct: 1097 ASKNISTPIITAQLVQDNNKIGARVVKAVIEKTTLGQVSSYIKEVYAPSKCYISVELDLKAIDQLKLSIDVYSVRRSILKGVIGHTRPAILRSLKDCHVKVKKGSKAKLRIYIPERSDKPGSNP-----PPLYFAMQALKVALPRVIVQGIPSVNRAVINEEDKEG----------ETSYHLLVEGYGLAEVMGSPGIDGRRTTTNHVIEV 1292
BLAST of mRNA_H-elongata_contig114810.1182.1 vs. uniprot
Match: A0A7S1ZKV2_9STRA (DNA-directed RNA polymerase subunit n=5 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZKV2_9STRA) HSP 1 Score: 202 bits (513), Expect = 2.810e-56 Identity = 117/211 (55.45%), Postives = 150/211 (71.09%), Query Frame = 1
Query: 1 ASQNISTPIITAKLVQDNSKTSARVVKAKIEKTTLGQVSVYMKEVFSATECFISIKLDMETIQDLHLDVTVHSVRQSILKGTYGENRPKILRDLKPQHVIVSAGGH-KIKVMPPELTSLKSLRAVETVRPKTFFVLQTLKAVLPGVIVQGIPSVNRAVINVQEPDASAPPGAGSAPQERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEV 630
AS+ ISTPIITAKLVQDN+K +ARVVKA IEKTTLG++++Y+KEV+S+T+C+ISI +DM+ I L L++ +VR SIL+G G+ R +LR LK +V+V G K++VM PE S KS A+ +F +Q LK LP VIVQGIP+VNRAVIN ++ G +E YHLLVEGYGL VMGAPGIDG T++NHIIEV
Sbjct: 1095 ASKLISTPIITAKLVQDNNKIAARVVKAVIEKTTLGEIAIYIKEVYSSTKCYISILIDMDAIDQLRLEIDAFTVRTSILRGARGQTRAPVLRGLKEANVLVKKGSKSKLRVMIPE-KSEKSGAAL-------YFTMQALKVALPLVIVQGIPTVNRAVINAED--------EGKNGKETYHLLVEGYGLPEVMGAPGIDGRNTKTNHIIEV 1289
BLAST of mRNA_H-elongata_contig114810.1182.1 vs. uniprot
Match: A0A6T7J7L8_9STRA (DNA-directed RNA polymerase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7J7L8_9STRA) HSP 1 Score: 188 bits (477), Expect = 8.660e-55 Identity = 108/211 (51.18%), Postives = 142/211 (67.30%), Query Frame = 1
Query: 1 ASQNISTPIITAKLVQDNSKTSARVVKAKIEKTTLGQVSVYMKEVFSATECFISIKLDMETIQDLHLDVTVHSVRQSILKGTYGENRPKILRDLKPQHVIVSAGGH-KIKVMPPELTSLKSLRAVETVRPKTFFVLQTLKAVLPGVIVQGIPSVNRAVINVQEPDASAPPGAGSAPQERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEV 630
AS+ ISTPIITA LVQD++K ARVVKA IEKTTLG++S Y+KEV++ +C+++++LDM I+ L L + +VR SIL+G G+ RP +LR LK QHV V G K+++ PE +S R + +FV+Q LK LP VIVQGI +VNRAVIN ++ D A YHLLVEG GL+AVMG+ G+DG T +NHIIEV
Sbjct: 53 ASKVISTPIITATLVQDDNKVGARVVKAGIEKTTLGEISEYIKEVYAPGKCYVTVQLDMNAIEQLKLSIDAFTVRTSILRGARGQTRPAVLRGLKDQHVKVKKGSKSKLRIYVPE----RSERGNASATAPVYFVMQALKVALPLVIVQGIATVNRAVINEEDKDGRA----------SYHLLVEGCGLSAVMGSNGVDGHHTTTNHIIEV 249
BLAST of mRNA_H-elongata_contig114810.1182.1 vs. uniprot
Match: B8C4M1_THAPS (DNA-directed RNA polymerase subunit n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4M1_THAPS) HSP 1 Score: 196 bits (499), Expect = 2.130e-54 Identity = 110/211 (52.13%), Postives = 143/211 (67.77%), Query Frame = 1
Query: 1 ASQNISTPIITAKLVQDNSKTSARVVKAKIEKTTLGQVSVYMKEVFSATECFISIKLDMETIQDLHLDVTVHSVRQSILKGTYGENRPKILRDLKPQHVIVSAGGH-KIKVMPPELTSLKSLRAVETVRPKTFFVLQTLKAVLPGVIVQGIPSVNRAVINVQEPDASAPPGAGSAPQERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEV 630
AS+NISTPIITAKLVQD++K AR+VKA IEKTTLG++S+Y+KEV+S+ +C++SI LDM+ I+ L L++ SVR+ ILKG G+ RP ILR L +HV+V G K++V P+ T+F++Q LK LP VIVQGI +VNRAVIN + +YHLLVEGYGLA VMG+PG+DG T +NHIIEV
Sbjct: 1099 ASKNISTPIITAKLVQDDNKVGARIVKAGIEKTTLGEISIYVKEVYSSGDCYLSILLDMDAIRQLRLNIDAVSVRRCILKGVRGQTRPPILRSLTDKHVLVKKGSKSKLRVFVPDKGETP-----------TYFLMQALKVALPRVIVQGISTVNRAVINEENKGGKT----------QYHLLVEGYGLAEVMGSPGVDGRHTTTNHIIEV 1288
BLAST of mRNA_H-elongata_contig114810.1182.1 vs. uniprot
Match: A0A7S3HNI7_9STRA (DNA-directed RNA polymerase n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNI7_9STRA) HSP 1 Score: 189 bits (479), Expect = 6.750e-54 Identity = 112/210 (53.33%), Postives = 148/210 (70.48%), Query Frame = 1
Query: 1 ASQNISTPIITAKLVQDNSKTSARVVKAKIEKTTLGQVSVYMKEVFSATECFISIKLDMETIQDLHLDVTVHSVRQSILKGTYGENRPKILRDLKPQHVIVSAGGHKIKVMPPELTSLKSLRAVETVRPKTFFVLQTLKAVLPGVIVQGIPSVNRAVINVQEPDASAPPGAGSAPQERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEV 630
AS ISTPII A+LVQ +S TSAR+VKA+IEKTTLG+V+ Y+KEV +I+IKLD ETIQ+LHL+VT SV+ +IL G RP ILR LK +H+ +S G+KIK+ PPE + + + + K +FV+Q LKA LP VIVQGIP+V+RAVIN +E D SA ++ ++LLVEGYGL VMG PG+ G ++SNHI+E+
Sbjct: 182 ASGEISTPIIEARLVQSDSMTSARIVKAQIEKTTLGEVAQYIKEVNRPMTSYIAIKLDSETIQNLHLNVTAASVKHAILYGPSSTTRPAILRLLKERHISISDKGNKIKIYPPEQKD--TAKGIPS-HQKVYFVIQALKAALPQVIVQGIPTVSRAVIN-EELD--------SAGKKNFYLLVEGYGLQEVMGCPGVMGDSSKSNHIMEL 379
BLAST of mRNA_H-elongata_contig114810.1182.1 vs. uniprot
Match: K0T0J0_THAOC (DNA-directed RNA polymerase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T0J0_THAOC) HSP 1 Score: 194 bits (492), Expect = 1.480e-53 Identity = 112/210 (53.33%), Postives = 144/210 (68.57%), Query Frame = 1
Query: 4 SQNISTPIITAKLVQDNSKTSARVVKAKIEKTTLGQVSVYMKEVFSATECFISIKLDMETIQDLHLDVTVHSVRQSILKGTYGENRPKILRDLKPQHVIVSAGGH-KIKVMPPELTSLKSLRAVETVRPKTFFVLQTLKAVLPGVIVQGIPSVNRAVINVQEPDASAPPGAGSAPQERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEV 630
S+NISTPIITAKLVQDN+K AR+VKA IEKTTLG++S+ +KEV+S+++C++SI+LDM+ I+ L L++ SVR+ ILKGT G+ RP +LR L +HV+V G K++V P S T+F +Q LK LPGVIVQGI SVNRAVIN + G P YHLLVEG GLA VMG+PG+DG T +NHI+EV
Sbjct: 699 SKNISTPIITAKLVQDNNKVGARIVKAGIEKTTLGEISICIKEVYSSSDCYLSIQLDMKAIEQLRLNIDAVSVRRCILKGTRGQTRPAVLRGLLEKHVLVKKGSKSKLRVYVPTDKS----------DSPTYFTMQALKVALPGVIVQGISSVNRAVINEES--------KGGKPS--YHLLVEGCGLAEVMGSPGVDGKFTTTNHIMEV 888
BLAST of mRNA_H-elongata_contig114810.1182.1 vs. uniprot
Match: A0A7S1FY33_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FY33_9STRA) HSP 1 Score: 192 bits (488), Expect = 6.430e-53 Identity = 109/211 (51.66%), Postives = 143/211 (67.77%), Query Frame = 1
Query: 1 ASQNISTPIITAKLVQDNSKTSARVVKAKIEKTTLGQVSVYMKEVFSATECFISIKLDMETIQDLHLDVTVHSVRQSILKGTYGENRPKILRDLKPQHVIVSAGGH-KIKVMPPELTSLKSLRAVETVRPKTFFVLQTLKAVLPGVIVQGIPSVNRAVINVQEPDASAPPGAGSAPQERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEV 630
AS+ ISTPIITAKLV+D++K ARVVK IEKTTLG+++ Y+KEV+S C++S+KLDM I+ L L V SVR SIL+G G+ +P LR LK +V++ G K++++ PE T+ +P +F +Q LK LP VIVQGIPSVNRAVIN +E D + YHLL+EGYGLA VMGAPG+DG +T +NH+IEV
Sbjct: 1179 ASKLISTPIITAKLVRDDNKVGARVVKGVIEKTTLGELAEYIKEVYSPKHCYLSVKLDMGAIEQLKLAVDAVSVRTSILRGVPGQTKPPTLRFLKEGNVLIKRGSRSKLRIIIPENTAAN--------QPPAYFYMQALKIHLPNVIVQGIPSVNRAVINEEEKDG----------KPSYHLLIEGYGLAEVMGAPGVDGLKTTTNHLIEV 1371
BLAST of mRNA_H-elongata_contig114810.1182.1 vs. uniprot
Match: A0A7S4NGV3_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NGV3_9STRA) HSP 1 Score: 191 bits (484), Expect = 2.210e-52 Identity = 106/211 (50.24%), Postives = 145/211 (68.72%), Query Frame = 1
Query: 1 ASQNISTPIITAKLVQDNSKTSARVVKAKIEKTTLGQVSVYMKEVFSATECFISIKLDMETIQDLHLDVTVHSVRQSILKGTYGENRPKILRDLKPQHVIVSAGGH-KIKVMPPELTSLKSLRAVETVRPKTFFVLQTLKAVLPGVIVQGIPSVNRAVINVQEPDASAPPGAGSAPQERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEV 630
AS+ ISTPIITA+LVQ+++K ARVVKA IEKTTLG+++ +KEV++ + +IS++LDM+ I+ L L++ ++VR SIL+G G+ RP +LR LK HV V G K++V P+ + K+ + P +F +Q LK LP VIV+GIP+VNRAVIN ++ D YHLLVEGYGLA VMG+PG+DG RT +NHIIEV
Sbjct: 1104 ASKLISTPIITARLVQNDNKVGARVVKAGIEKTTLGEIATCIKEVYAPNKTYISVQLDMDAIEQLKLEIDAYTVRTSILRGARGQTRPPVLRSLKETHVRVKKGSKSKLRVYIPDPSEKKANQ------PPLYFAMQALKVALPDVIVRGIPTVNRAVINEEDEDGKT----------TYHLLVEGYGLAEVMGSPGVDGRRTTTNHIIEV 1298 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114810.1182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig114810.1182.1 >prot_H-elongata_contig114810.1182.1 ID=prot_H-elongata_contig114810.1182.1|Name=mRNA_H-elongata_contig114810.1182.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=210bp ASQNISTPIITAKLVQDNSKTSARVVKAKIEKTTLGQVSVYMKEVFSATEback to top mRNA from alignment at H-elongata_contig114810:69..2065+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig114810.1182.1 ID=mRNA_H-elongata_contig114810.1182.1|Name=mRNA_H-elongata_contig114810.1182.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1997bp|location=Sequence derived from alignment at H-elongata_contig114810:69..2065+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig114810:69..2065+ >mRNA_H-elongata_contig114810.1182.1 ID=mRNA_H-elongata_contig114810.1182.1|Name=mRNA_H-elongata_contig114810.1182.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1260bp|location=Sequence derived from alignment at H-elongata_contig114810:69..2065+ (Himanthalia elongata Himel1 dioecious)back to top |