mRNA_H-elongata_contig114810.1182.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114810.1182.1
Unique NamemRNA_H-elongata_contig114810.1182.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig114810.1182.1 vs. uniprot
Match: D7FU80_ECTSI (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU80_ECTSI)

HSP 1 Score: 336 bits (861), Expect = 1.740e-103
Identity = 173/210 (82.38%), Postives = 192/210 (91.43%), Query Frame = 1
Query:    1 ASQNISTPIITAKLVQDNSKTSARVVKAKIEKTTLGQVSVYMKEVFSATECFISIKLDMETIQDLHLDVTVHSVRQSILKGTYGENRPKILRDLKPQHVIVSAGGHKIKVMPPELTSLKSLRAVETVRPKTFFVLQTLKAVLPGVIVQGIPSVNRAVINVQEPDASAPPGAGSAPQERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEV 630
            AS+NISTPIITAKLVQD+SKTSARVVKAKIEKTTLGQV+VYMKEVFSA+ECFI+IKLDM  +QDLHLD+ VH+VR SILKG +GE RP++LRDLKPQ+V++S GGHKIKVMPPEL+  KS RA ETVRPKTFFVLQ LKAVLPGVIVQGIPSVNRAVINVQE  + A   +G+AP+ERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEV
Sbjct: 1185 ASKNISTPIITAKLVQDDSKTSARVVKAKIEKTTLGQVAVYMKEVFSASECFIAIKLDMHAVQDLHLDINVHTVRHSILKGNFGETRPRVLRDLKPQNVVISGGGHKIKVMPPELSGAKSARAAETVRPKTFFVLQALKAVLPGVIVQGIPSVNRAVINVQENSSGA--ASGAAPKERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEV 1392          
BLAST of mRNA_H-elongata_contig114810.1182.1 vs. uniprot
Match: A0A7S1D4Y3_CYCTE (DNA-directed RNA polymerase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D4Y3_CYCTE)

HSP 1 Score: 197 bits (501), Expect = 3.270e-58
Identity = 112/211 (53.08%), Postives = 147/211 (69.67%), Query Frame = 1
Query:    1 ASQNISTPIITAKLVQDNSKTSARVVKAKIEKTTLGQVSVYMKEVFSATECFISIKLDMETIQDLHLDVTVHSVRQSILKGTYGENRPKILRDLKPQHVIVSAGG-HKIKVMPPELTSLKSLRAVETVRPKTFFVLQTLKAVLPGVIVQGIPSVNRAVINVQEPDASAPPGAGSAPQERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEV 630
            AS+ ISTPIITAKL QD++K  AR+VKA IEKTTLG++S ++KEV+S+ +C+IS++LDMETI+ L L++  ++VR+SIL G  G+ R  +LR LK Q + V  G   K++V  P      S     ++ P TFFV+Q LK  LP VIVQGIPSVNRAVIN ++             +  YHLLVEGYGLA VMG+PG+DG+ T +NHIIEV
Sbjct:   73 ASKLISTPIITAKLDQDDNKVGARIVKAGIEKTTLGEISAHIKEVYSSGKCYISVQLDMETIEQLKLNIDANTVRRSILYGARGQTRAPVLRILKEQSIKVKRGSTSKLRVYLPSQPESAS----SSIPPTTFFVMQALKVTLPQVIVQGIPSVNRAVINEEDKGG----------RTSYHLLVEGYGLAEVMGSPGVDGSHTTTNHIIEV 269          
BLAST of mRNA_H-elongata_contig114810.1182.1 vs. uniprot
Match: A0A7S3PXX2_9STRA (DNA-directed RNA polymerase subunit n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PXX2_9STRA)

HSP 1 Score: 207 bits (527), Expect = 3.690e-58
Identity = 117/211 (55.45%), Postives = 146/211 (69.19%), Query Frame = 1
Query:    1 ASQNISTPIITAKLVQDNSKTSARVVKAKIEKTTLGQVSVYMKEVFSATECFISIKLDMETIQDLHLDVTVHSVRQSILKGTYGENRPKILRDLKPQHVIVSAGGH-KIKVMPPELTSLKSLRAVETVRPKTFFVLQTLKAVLPGVIVQGIPSVNRAVINVQEPDASAPPGAGSAPQERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEV 630
            AS+NISTPIITA+LVQDN+K  ARVVKA IEKTTLGQVS Y+KEV++ ++C+IS++LD++ I  L L + V+SVR+SILKG  G  RP ILR LK  HV V  G   K+++  PE +            P  +F +Q LK  LP VIVQGIPSVNRAVIN ++ +           +  YHLLVEGYGLA VMG+PGIDG RT +NH+IEV
Sbjct: 1097 ASKNISTPIITAQLVQDNNKIGARVVKAVIEKTTLGQVSSYIKEVYAPSKCYISVELDLKAIDQLKLSIDVYSVRRSILKGVIGHTRPAILRSLKDCHVKVKKGSKAKLRIYIPERSDKPGSNP-----PPLYFAMQALKVALPRVIVQGIPSVNRAVINEEDKEG----------ETSYHLLVEGYGLAEVMGSPGIDGRRTTTNHVIEV 1292          
BLAST of mRNA_H-elongata_contig114810.1182.1 vs. uniprot
Match: A0A7S1ZKV2_9STRA (DNA-directed RNA polymerase subunit n=5 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZKV2_9STRA)

HSP 1 Score: 202 bits (513), Expect = 2.810e-56
Identity = 117/211 (55.45%), Postives = 150/211 (71.09%), Query Frame = 1
Query:    1 ASQNISTPIITAKLVQDNSKTSARVVKAKIEKTTLGQVSVYMKEVFSATECFISIKLDMETIQDLHLDVTVHSVRQSILKGTYGENRPKILRDLKPQHVIVSAGGH-KIKVMPPELTSLKSLRAVETVRPKTFFVLQTLKAVLPGVIVQGIPSVNRAVINVQEPDASAPPGAGSAPQERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEV 630
            AS+ ISTPIITAKLVQDN+K +ARVVKA IEKTTLG++++Y+KEV+S+T+C+ISI +DM+ I  L L++   +VR SIL+G  G+ R  +LR LK  +V+V  G   K++VM PE  S KS  A+       +F +Q LK  LP VIVQGIP+VNRAVIN ++         G   +E YHLLVEGYGL  VMGAPGIDG  T++NHIIEV
Sbjct: 1095 ASKLISTPIITAKLVQDNNKIAARVVKAVIEKTTLGEIAIYIKEVYSSTKCYISILIDMDAIDQLRLEIDAFTVRTSILRGARGQTRAPVLRGLKEANVLVKKGSKSKLRVMIPE-KSEKSGAAL-------YFTMQALKVALPLVIVQGIPTVNRAVINAED--------EGKNGKETYHLLVEGYGLPEVMGAPGIDGRNTKTNHIIEV 1289          
BLAST of mRNA_H-elongata_contig114810.1182.1 vs. uniprot
Match: A0A6T7J7L8_9STRA (DNA-directed RNA polymerase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7J7L8_9STRA)

HSP 1 Score: 188 bits (477), Expect = 8.660e-55
Identity = 108/211 (51.18%), Postives = 142/211 (67.30%), Query Frame = 1
Query:    1 ASQNISTPIITAKLVQDNSKTSARVVKAKIEKTTLGQVSVYMKEVFSATECFISIKLDMETIQDLHLDVTVHSVRQSILKGTYGENRPKILRDLKPQHVIVSAGGH-KIKVMPPELTSLKSLRAVETVRPKTFFVLQTLKAVLPGVIVQGIPSVNRAVINVQEPDASAPPGAGSAPQERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEV 630
            AS+ ISTPIITA LVQD++K  ARVVKA IEKTTLG++S Y+KEV++  +C+++++LDM  I+ L L +   +VR SIL+G  G+ RP +LR LK QHV V  G   K+++  PE    +S R   +     +FV+Q LK  LP VIVQGI +VNRAVIN ++ D  A           YHLLVEG GL+AVMG+ G+DG  T +NHIIEV
Sbjct:   53 ASKVISTPIITATLVQDDNKVGARVVKAGIEKTTLGEISEYIKEVYAPGKCYVTVQLDMNAIEQLKLSIDAFTVRTSILRGARGQTRPAVLRGLKDQHVKVKKGSKSKLRIYVPE----RSERGNASATAPVYFVMQALKVALPLVIVQGIATVNRAVINEEDKDGRA----------SYHLLVEGCGLSAVMGSNGVDGHHTTTNHIIEV 249          
BLAST of mRNA_H-elongata_contig114810.1182.1 vs. uniprot
Match: B8C4M1_THAPS (DNA-directed RNA polymerase subunit n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4M1_THAPS)

HSP 1 Score: 196 bits (499), Expect = 2.130e-54
Identity = 110/211 (52.13%), Postives = 143/211 (67.77%), Query Frame = 1
Query:    1 ASQNISTPIITAKLVQDNSKTSARVVKAKIEKTTLGQVSVYMKEVFSATECFISIKLDMETIQDLHLDVTVHSVRQSILKGTYGENRPKILRDLKPQHVIVSAGGH-KIKVMPPELTSLKSLRAVETVRPKTFFVLQTLKAVLPGVIVQGIPSVNRAVINVQEPDASAPPGAGSAPQERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEV 630
            AS+NISTPIITAKLVQD++K  AR+VKA IEKTTLG++S+Y+KEV+S+ +C++SI LDM+ I+ L L++   SVR+ ILKG  G+ RP ILR L  +HV+V  G   K++V  P+                T+F++Q LK  LP VIVQGI +VNRAVIN +                +YHLLVEGYGLA VMG+PG+DG  T +NHIIEV
Sbjct: 1099 ASKNISTPIITAKLVQDDNKVGARIVKAGIEKTTLGEISIYVKEVYSSGDCYLSILLDMDAIRQLRLNIDAVSVRRCILKGVRGQTRPPILRSLTDKHVLVKKGSKSKLRVFVPDKGETP-----------TYFLMQALKVALPRVIVQGISTVNRAVINEENKGGKT----------QYHLLVEGYGLAEVMGSPGVDGRHTTTNHIIEV 1288          
BLAST of mRNA_H-elongata_contig114810.1182.1 vs. uniprot
Match: A0A7S3HNI7_9STRA (DNA-directed RNA polymerase n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNI7_9STRA)

HSP 1 Score: 189 bits (479), Expect = 6.750e-54
Identity = 112/210 (53.33%), Postives = 148/210 (70.48%), Query Frame = 1
Query:    1 ASQNISTPIITAKLVQDNSKTSARVVKAKIEKTTLGQVSVYMKEVFSATECFISIKLDMETIQDLHLDVTVHSVRQSILKGTYGENRPKILRDLKPQHVIVSAGGHKIKVMPPELTSLKSLRAVETVRPKTFFVLQTLKAVLPGVIVQGIPSVNRAVINVQEPDASAPPGAGSAPQERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEV 630
            AS  ISTPII A+LVQ +S TSAR+VKA+IEKTTLG+V+ Y+KEV      +I+IKLD ETIQ+LHL+VT  SV+ +IL G     RP ILR LK +H+ +S  G+KIK+ PPE     + + + +   K +FV+Q LKA LP VIVQGIP+V+RAVIN +E D        SA ++ ++LLVEGYGL  VMG PG+ G  ++SNHI+E+
Sbjct:  182 ASGEISTPIIEARLVQSDSMTSARIVKAQIEKTTLGEVAQYIKEVNRPMTSYIAIKLDSETIQNLHLNVTAASVKHAILYGPSSTTRPAILRLLKERHISISDKGNKIKIYPPEQKD--TAKGIPS-HQKVYFVIQALKAALPQVIVQGIPTVSRAVIN-EELD--------SAGKKNFYLLVEGYGLQEVMGCPGVMGDSSKSNHIMEL 379          
BLAST of mRNA_H-elongata_contig114810.1182.1 vs. uniprot
Match: K0T0J0_THAOC (DNA-directed RNA polymerase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T0J0_THAOC)

HSP 1 Score: 194 bits (492), Expect = 1.480e-53
Identity = 112/210 (53.33%), Postives = 144/210 (68.57%), Query Frame = 1
Query:    4 SQNISTPIITAKLVQDNSKTSARVVKAKIEKTTLGQVSVYMKEVFSATECFISIKLDMETIQDLHLDVTVHSVRQSILKGTYGENRPKILRDLKPQHVIVSAGGH-KIKVMPPELTSLKSLRAVETVRPKTFFVLQTLKAVLPGVIVQGIPSVNRAVINVQEPDASAPPGAGSAPQERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEV 630
            S+NISTPIITAKLVQDN+K  AR+VKA IEKTTLG++S+ +KEV+S+++C++SI+LDM+ I+ L L++   SVR+ ILKGT G+ RP +LR L  +HV+V  G   K++V  P   S             T+F +Q LK  LPGVIVQGI SVNRAVIN +          G  P   YHLLVEG GLA VMG+PG+DG  T +NHI+EV
Sbjct:  699 SKNISTPIITAKLVQDNNKVGARIVKAGIEKTTLGEISICIKEVYSSSDCYLSIQLDMKAIEQLRLNIDAVSVRRCILKGTRGQTRPAVLRGLLEKHVLVKKGSKSKLRVYVPTDKS----------DSPTYFTMQALKVALPGVIVQGISSVNRAVINEES--------KGGKPS--YHLLVEGCGLAEVMGSPGVDGKFTTTNHIMEV 888          
BLAST of mRNA_H-elongata_contig114810.1182.1 vs. uniprot
Match: A0A7S1FY33_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FY33_9STRA)

HSP 1 Score: 192 bits (488), Expect = 6.430e-53
Identity = 109/211 (51.66%), Postives = 143/211 (67.77%), Query Frame = 1
Query:    1 ASQNISTPIITAKLVQDNSKTSARVVKAKIEKTTLGQVSVYMKEVFSATECFISIKLDMETIQDLHLDVTVHSVRQSILKGTYGENRPKILRDLKPQHVIVSAGGH-KIKVMPPELTSLKSLRAVETVRPKTFFVLQTLKAVLPGVIVQGIPSVNRAVINVQEPDASAPPGAGSAPQERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEV 630
            AS+ ISTPIITAKLV+D++K  ARVVK  IEKTTLG+++ Y+KEV+S   C++S+KLDM  I+ L L V   SVR SIL+G  G+ +P  LR LK  +V++  G   K++++ PE T+          +P  +F +Q LK  LP VIVQGIPSVNRAVIN +E D           +  YHLL+EGYGLA VMGAPG+DG +T +NH+IEV
Sbjct: 1179 ASKLISTPIITAKLVRDDNKVGARVVKGVIEKTTLGELAEYIKEVYSPKHCYLSVKLDMGAIEQLKLAVDAVSVRTSILRGVPGQTKPPTLRFLKEGNVLIKRGSRSKLRIIIPENTAAN--------QPPAYFYMQALKIHLPNVIVQGIPSVNRAVINEEEKDG----------KPSYHLLIEGYGLAEVMGAPGVDGLKTTTNHLIEV 1371          
BLAST of mRNA_H-elongata_contig114810.1182.1 vs. uniprot
Match: A0A7S4NGV3_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NGV3_9STRA)

HSP 1 Score: 191 bits (484), Expect = 2.210e-52
Identity = 106/211 (50.24%), Postives = 145/211 (68.72%), Query Frame = 1
Query:    1 ASQNISTPIITAKLVQDNSKTSARVVKAKIEKTTLGQVSVYMKEVFSATECFISIKLDMETIQDLHLDVTVHSVRQSILKGTYGENRPKILRDLKPQHVIVSAGGH-KIKVMPPELTSLKSLRAVETVRPKTFFVLQTLKAVLPGVIVQGIPSVNRAVINVQEPDASAPPGAGSAPQERYHLLVEGYGLAAVMGAPGIDGTRTRSNHIIEV 630
            AS+ ISTPIITA+LVQ+++K  ARVVKA IEKTTLG+++  +KEV++  + +IS++LDM+ I+ L L++  ++VR SIL+G  G+ RP +LR LK  HV V  G   K++V  P+ +  K+ +      P  +F +Q LK  LP VIV+GIP+VNRAVIN ++ D              YHLLVEGYGLA VMG+PG+DG RT +NHIIEV
Sbjct: 1104 ASKLISTPIITARLVQNDNKVGARVVKAGIEKTTLGEIATCIKEVYAPNKTYISVQLDMDAIEQLKLEIDAYTVRTSILRGARGQTRPPVLRSLKETHVRVKKGSKSKLRVYIPDPSEKKANQ------PPLYFAMQALKVALPDVIVRGIPTVNRAVINEEDEDGKT----------TYHLLVEGYGLAEVMGSPGVDGRRTTTNHIIEV 1298          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114810.1182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU80_ECTSI1.740e-10382.38DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A7S1D4Y3_CYCTE3.270e-5853.08DNA-directed RNA polymerase n=1 Tax=Cyclophora ten... [more]
A0A7S3PXX2_9STRA3.690e-5855.45DNA-directed RNA polymerase subunit n=2 Tax=Chaeto... [more]
A0A7S1ZKV2_9STRA2.810e-5655.45DNA-directed RNA polymerase subunit n=5 Tax=Ditylu... [more]
A0A6T7J7L8_9STRA8.660e-5551.18DNA-directed RNA polymerase n=1 Tax=Attheya septen... [more]
B8C4M1_THAPS2.130e-5452.13DNA-directed RNA polymerase subunit n=1 Tax=Thalas... [more]
A0A7S3HNI7_9STRA6.750e-5453.33DNA-directed RNA polymerase n=2 Tax=Spumella elong... [more]
K0T0J0_THAOC1.480e-5353.33DNA-directed RNA polymerase n=1 Tax=Thalassiosira ... [more]
A0A7S1FY33_9STRA6.430e-5351.66DNA-directed RNA polymerase subunit n=1 Tax=Coreth... [more]
A0A7S4NGV3_9STRA2.210e-5250.24DNA-directed RNA polymerase subunit n=1 Tax=Odonte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114810contigH-elongata_contig114810:69..2065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score337.8
Seed ortholog evalue3.6e-90
Seed eggNOG ortholog2880.D7FU80
Preferred namePOLR3A
KEGG rclassRC02795
KEGG koko:K03018,ko:K21594
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05169,map00230,map00240,map01100,map03020,map04623,map05169
KEGG ModuleM00181
GOsGO:0000428,GO:0000731,GO:0001817,GO:0001819,GO:0002376,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005666,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006351,GO:0006366,GO:0006383,GO:0006399,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009987,GO:0010467,GO:0010494,GO:0016070,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0030880,GO:0031974,GO:0031981,GO:0032479,GO:0032481,GO:0032648,GO:0032728,GO:0032774,GO:0032991,GO:0033554,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035770,GO:0036464,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045087,GO:0046483,GO:0048518,GO:0050789,GO:0050896,GO:0051239,GO:0051240,GO:0051716,GO:0055029,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0097159,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234,GO:1990904
EggNOG free text desc.DNA-directed 5'-3' RNA polymerase activity
EggNOG OGsCOG0086@1,KOG0261@2759
EC2.7.7.6
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA polymerase III, largest subunit
Ec32 orthologEc-25_003070.1
Exons4
Model size630
Cds size630
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114810.1182.1prot_H-elongata_contig114810.1182.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114810 69..2065 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929664.2425954-CDS-H-elongata_contig114810:68..1791622929664.2425954-CDS-H-elongata_contig114810:68..179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114810 69..179 +
1691679110.8167634-CDS-H-elongata_contig114810:68..1791691679110.8167634-CDS-H-elongata_contig114810:68..179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114810 69..179 +
1622929664.2582898-CDS-H-elongata_contig114810:414..6241622929664.2582898-CDS-H-elongata_contig114810:414..624Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114810 415..624 +
1691679110.829446-CDS-H-elongata_contig114810:414..6241691679110.829446-CDS-H-elongata_contig114810:414..624Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114810 415..624 +
1622929664.2839754-CDS-H-elongata_contig114810:1230..14421622929664.2839754-CDS-H-elongata_contig114810:1230..1442Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114810 1231..1442 +
1691679110.8379495-CDS-H-elongata_contig114810:1230..14421691679110.8379495-CDS-H-elongata_contig114810:1230..1442Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114810 1231..1442 +
1622929664.297194-CDS-H-elongata_contig114810:1968..20651622929664.297194-CDS-H-elongata_contig114810:1968..2065Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114810 1969..2065 +
1691679110.8467958-CDS-H-elongata_contig114810:1968..20651691679110.8467958-CDS-H-elongata_contig114810:1968..2065Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114810 1969..2065 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114810.1182.1

>prot_H-elongata_contig114810.1182.1 ID=prot_H-elongata_contig114810.1182.1|Name=mRNA_H-elongata_contig114810.1182.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=210bp
ASQNISTPIITAKLVQDNSKTSARVVKAKIEKTTLGQVSVYMKEVFSATE
CFISIKLDMETIQDLHLDVTVHSVRQSILKGTYGENRPKILRDLKPQHVI
VSAGGHKIKVMPPELTSLKSLRAVETVRPKTFFVLQTLKAVLPGVIVQGI
PSVNRAVINVQEPDASAPPGAGSAPQERYHLLVEGYGLAAVMGAPGIDGT
RTRSNHIIEV
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mRNA from alignment at H-elongata_contig114810:69..2065+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114810.1182.1 ID=mRNA_H-elongata_contig114810.1182.1|Name=mRNA_H-elongata_contig114810.1182.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1997bp|location=Sequence derived from alignment at H-elongata_contig114810:69..2065+ (Himanthalia elongata Himel1 dioecious)
GCTTCACAGAACATCAGCACTCCGATCATCACCGCCAAGCTGGTTCAGGA CAATAGCAAGACTTCAGCCAGGGTTGTCAAGGCCAAAATCGAAAAAACCA CGCTTGGGCAGGTACGGTATTAATACTGTTACCGACAGAAGGAGCGGTAT TAATAGTGTTACGGACAGGAGAGTATATAGAAGACTAGGAGATTGATCCT CCCGTAAAGAAGGATGTCCGTGCGTTTGTGTGCCTCCTCCCCTGCCCCCC CTCTTTTCCAGTGTATTTATTTCTCGGTAATGCCTCTTTACGATGAGATG CGGTTCAATTCGATTCAATTCGGTTCGGTTCGGTTCGGTACGGCAGGTGT CGGTGTACATGAAGGAAGTCTTTTCGGCGACGGAGTGCTTCATCTCTATC AAGTTGGACATGGAAACCATTCAGGACCTCCACTTGGATGTGACCGTCCA CAGTGTGCGGCAGTCCATCCTCAAGGGAACCTACGGGGAGAACCGACCCA AGATCCTCCGAGACCTCAAGCCTCAACACGTGATCGTCTCGGCCGGAGGG CACAAGGTGACGGTGACACTTGGCTCTCGCTTTCCTGTTCGATCAGATGC GGCAGGATTGCTCACGGATCTTCGATTGGTAGTGTCTGCGGAGCAAGACG TACTATCCACAGGGAAAACGCCTCGGTGTTTTTTTCGGGGAGGCGTAGGG GGGGGCAAGGGAATCCTTGTGGCCGCTGCCGCGTACGGCACATATGTCGG ACAACGTGTGGTTGGCCAAAAGCCTTCACGGCGAAGCCGAAGTCAGGCGG CCTGAGAAAATCTAATCGATGATGGCTAATTTTTTCGGGGTTTTTATATT GAAACCCCAGCACTACTGTCTGTCATATCCCGCACGGGAGGTACAAACAT CTCTACCCCGACCTCTCTTGCGCGCAAGCTTTCACGCAACTTGTGGGCAT CTCTTGAAGCCCACAGTCTTCAACGCCACACTCAAGCGTATACGGACGGT AGATCGCCCCCCCTCCCCCCTCCCCCCTCTACCCCCCCCAGGAATAATGC CTCGCTTTTCCGGAGACGCGTGGTTACTGGTCTGACAGCCAAAGCATGCA AAACTTGAGTACGCCCCCCCCCCCCCATCTCCCCTCGCTCGCTCTTTTTA TCGGAATGACAGATCAAAGTGATGCCGCCAGAGTTGACCAGCCTCAAAAG CTTGAGAGCGGTGGAAACGGTCCGACCCAAGACGTTCTTCGTCCTTCAGA CACTCAAGGCGGTTCTTCCCGGGGTAATCGTGCAGGGCATTCCTTCCGTC AACCGCGCGGTCATCAACGTCCAGGAGCCCGACGCTTCGGCACCGCCGGG GGCAGGATCGGCTCCTCAGGAGCGGTGCGTCCCCCCCCCCCTACCTTCTC TTCCTTCGCCGATGTTGATCTTACGTTGCCTCGTATTTTGTATTTTTATT GTGTATGTCTTTATGTAGCCCGCCTATCTGTCTGTTTCATCATATATCTC AGGGTCTACTGGTGGGGCCCTTGATACGACGGACATGTCACGGGAACGAG GACAGATCCCTGCCCAGATTTACGGTTTTATAATTTATCTGGTATCGGTT TATAGTTACTTGTCTTGAGTAGGGTTTGGCCTCCCGTCGATGGCCTTTAA TGATCACCATCGGAGGTGTCTTTTAACGGTGTACCGTCTATTTCATATAA TTTGGAAACCCACGTTAGGATAAGTCACACAACTTTCCACCCACCCACCC GCCCCCCCTCCGTAATAATGTCTCCAACTCTCACTCGTGTGGTGATGCCA AAATATCGAGAGAGAGAAAGAGAGACCAAGACATTGTCGAACCTATCGAC CCCCCCCCTATTTCCCTATTTTTGTTTTGTTGTATGTATGTATGCGGAAG GTACCATCTTCTGGTAGAGGGCTACGGACTCGCCGCTGTCATGGGCGCAC CTGGCATCGACGGGACGAGAACGAGGTCCAATCACATCATCGAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig114810:69..2065+

>mRNA_H-elongata_contig114810.1182.1 ID=mRNA_H-elongata_contig114810.1182.1|Name=mRNA_H-elongata_contig114810.1182.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1260bp|location=Sequence derived from alignment at H-elongata_contig114810:69..2065+ (Himanthalia elongata Himel1 dioecious)
GCTTCACAGAACATCAGCACTCCGATCATCACCGCCAAGCTGGTTCAGGA
CAATAGCAAGACTTCAGCCAGGGTTGTCAAGGCCAAAATCGAAAAAACCA
CGCTTGGGCAGGCTTCACAGAACATCAGCACTCCGATCATCACCGCCAAG
CTGGTTCAGGACAATAGCAAGACTTCAGCCAGGGTTGTCAAGGCCAAAAT
CGAAAAAACCACGCTTGGGCAGGTGTCGGTGTACATGAAGGAAGTCTTTT
CGGCGACGGAGTGCTTCATCTCTATCAAGTTGGACATGGAAACCATTCAG
GACCTCCACTTGGATGTGACCGTCCACAGTGTGCGGCAGTCCATCCTCAA
GGGAACCTACGGGGAGAACCGACCCAAGATCCTCCGAGACCTCAAGCCTC
AACACGTGATCGTCTCGGCCGGAGGGCACAAGGTGTCGGTGTACATGAAG
GAAGTCTTTTCGGCGACGGAGTGCTTCATCTCTATCAAGTTGGACATGGA
AACCATTCAGGACCTCCACTTGGATGTGACCGTCCACAGTGTGCGGCAGT
CCATCCTCAAGGGAACCTACGGGGAGAACCGACCCAAGATCCTCCGAGAC
CTCAAGCCTCAACACGTGATCGTCTCGGCCGGAGGGCACAAGATCAAAGT
GATGCCGCCAGAGTTGACCAGCCTCAAAAGCTTGAGAGCGGTGGAAACGG
TCCGACCCAAGACGTTCTTCGTCCTTCAGACACTCAAGGCGGTTCTTCCC
GGGGTAATCGTGCAGGGCATTCCTTCCGTCAACCGCGCGGTCATCAACGT
CCAGGAGCCCGACGCTTCGGCACCGCCGGGGGCAGGATCGGCTCCTCAGG
AGCGATCAAAGTGATGCCGCCAGAGTTGACCAGCCTCAAAAGCTTGAGAG
CGGTGGAAACGGTCCGACCCAAGACGTTCTTCGTCCTTCAGACACTCAAG
GCGGTTCTTCCCGGGGTAATCGTGCAGGGCATTCCTTCCGTCAACCGCGC
GGTCATCAACGTCCAGGAGCCCGACGCTTCGGCACCGCCGGGGGCAGGAT
CGGCTCCTCAGGAGCGGTACCATCTTCTGGTAGAGGGCTACGGACTCGCC
GCTGTCATGGGCGCACCTGGCATCGACGGGACGAGAACGAGGTCCAATCA
CATCATCGAGGTGGTACCATCTTCTGGTAGAGGGCTACGGACTCGCCGCT
GTCATGGGCGCACCTGGCATCGACGGGACGAGAACGAGGTCCAATCACAT
CATCGAGGTG
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