mRNA_H-elongata_contig114748.1175.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114748.1175.1
Unique NamemRNA_H-elongata_contig114748.1175.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig114748.1175.1 vs. uniprot
Match: D8LTB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTB4_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 1.720e-61
Identity = 97/122 (79.51%), Postives = 110/122 (90.16%), Query Frame = 1
Query:    1 QLARKEAMVEELKKMSIAVQQDAANDQHYEVSADFYRLVLGPRLKYSSGLWAKADSTFEESEVAMLEMYCERARLRDGMRIVDLGCGWGSLTLFLAKKYPNSSIASISNSASQKELIERKCK 366
            QLARKEA++EELKKM IA QQDAAN+QHYEV+A FY L LGPRLKYSSG W K+DSTFEESEVAMLEMYC+RA+L DGM+IVDLGCGWGSLTLFLA+KYPN+SI SISNSASQK  I+ +C+
Sbjct:   53 QLARKEALIEELKKMPIATQQDAANEQHYEVNAAFYHLALGPRLKYSSGFWPKSDSTFEESEVAMLEMYCDRAKLEDGMKIVDLGCGWGSLTLFLAEKYPNASITSISNSASQKTYIDGQCR 174          
BLAST of mRNA_H-elongata_contig114748.1175.1 vs. uniprot
Match: A0A835YH28_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH28_9STRA)

HSP 1 Score: 178 bits (451), Expect = 1.260e-52
Identity = 88/121 (72.73%), Postives = 100/121 (82.64%), Query Frame = 1
Query:    1 QLARKEAMVEELKKMSIAVQQDAANDQHYEVSADFYRLVLGPRLKYSSGLWAKADSTFEESEVAMLEMYCERARLRDGMRIVDLGCGWGSLTLFLAKKYPNSSIASISNSASQKELIERKC 363
            Q A KEAMV+EL+ M IAVQ DAAN QHYEVSA FY++VLGPRLKYSSGLW + D+TF ESE AMLE YCERA+L DGMRIVDLGCGWGSLTLFLA +YP + + +ISNSASQK  I+  C
Sbjct:   53 QAAAKEAMVKELQSMPIAVQTDAANAQHYEVSAAFYKIVLGPRLKYSSGLWPRPDTTFAESETAMLECYCERAQLADGMRIVDLGCGWGSLTLFLAARYPAARVTAISNSASQKAFIDAAC 173          
BLAST of mRNA_H-elongata_contig114748.1175.1 vs. uniprot
Match: A0A7S4N4U2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N4U2_9STRA)

HSP 1 Score: 157 bits (396), Expect = 4.360e-45
Identity = 79/116 (68.10%), Postives = 94/116 (81.03%), Query Frame = 1
Query:    7 ARKEAMVEELKKM-SIAVQQDAANDQHYEVSADFYRLVLGPRLKYSSGLWAKADSTFEESEVAMLEMYCERARLRDGMRIVDLGCGWGSLTLFLAKKYPNSSIASISNSASQKELI 351
            A K A+V+ELK   +IA+  D AN+QHYEV A FY + LGPR KYSSGLWA  ++TFEESEVAMLE+YCERA ++DGM+IVDLGCGWGSLTL LA++YPN  I SISNS SQ+E I
Sbjct:  105 ATKMAIVQELKNTKTIAINTDEANEQHYEVPAAFYDMCLGPRKKYSSGLWADKNTTFEESEVAMLELYCERAGVKDGMKIVDLGCGWGSLTLHLAERYPNCKITSISNSHSQREYI 220          
BLAST of mRNA_H-elongata_contig114748.1175.1 vs. uniprot
Match: A0A7S1G3N7_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G3N7_9STRA)

HSP 1 Score: 159 bits (402), Expect = 9.710e-45
Identity = 79/120 (65.83%), Postives = 91/120 (75.83%), Query Frame = 1
Query:    7 ARKEAMVEELKKMSIAVQQDAANDQHYEVSADFYRLVLGPRLKYSSGLWAKADSTFEESEVAMLEMYCERARLRDGMRIVDLGCGWGSLTLFLAKKYPNSSIASISNSASQKELIERKCK 366
            A K ++VEEL+ + +AV    AN+QHYEV A FY L LGPR KYSSGLW    +TFEESE AML++YCERA L DGMRIVDLGCGWGSLTL LA+KYP S I  +SNSASQ+E I R  K
Sbjct:  114 ATKMSIVEELRSLPVAVATREANEQHYEVPAAFYDLSLGPRKKYSSGLWTSPSTTFEESEAAMLDLYCERAELEDGMRIVDLGCGWGSLTLHLAEKYPRSQITGVSNSASQREYILRTAK 233          
BLAST of mRNA_H-elongata_contig114748.1175.1 vs. uniprot
Match: A0A7S1CZY2_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CZY2_CYCTE)

HSP 1 Score: 154 bits (390), Expect = 4.370e-44
Identity = 74/116 (63.79%), Postives = 91/116 (78.45%), Query Frame = 1
Query:   19 AMVEELKKMSIAVQQDAANDQHYEVSADFYRLVLGPRLKYSSGLWAKADSTFEESEVAMLEMYCERARLRDGMRIVDLGCGWGSLTLFLAKKYPNSSIASISNSASQKELIERKCK 366
            A+V++L  M IA+  DAAN+QHYEV A FY L LGPR KYSSGLW + D+TFE+SE+AML++YC+RA ++DGM IVDLGCGWGSLTL L +K+PN  I SISNS SQ+E I    K
Sbjct:    2 AIVKQLHTMPIAIDTDAANEQHYEVPAKFYDLSLGPRKKYSSGLWPEPDTTFEQSEIAMLDLYCQRANVQDGMNIVDLGCGWGSLTLHLIEKFPNCKITSISNSNSQREYIMATAK 117          
BLAST of mRNA_H-elongata_contig114748.1175.1 vs. uniprot
Match: A0A482S8K2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S8K2_9ARCH)

HSP 1 Score: 150 bits (378), Expect = 1.650e-43
Identity = 74/120 (61.67%), Postives = 90/120 (75.00%), Query Frame = 1
Query:    7 ARKEAMVEELKKMSIAVQQDAANDQHYEVSADFYRLVLGPRLKYSSGLWAKADSTFEESEVAMLEMYCERARLRDGMRIVDLGCGWGSLTLFLAKKYPNSSIASISNSASQKELIERKCK 366
            A K A V+EL  M IAV Q  ANDQHYEV  +FY+LVLGP +KYSSG W    +T  +SEV MLE YCERA+L DGM+++DLGCGWGS+TL++A KYP +SI SISNS SQ+E I  K +
Sbjct:   39 AFKSAFVKELLTMPIAVAQTKANDQHYEVPDEFYQLVLGPCMKYSSGFWPTPSTTLAQSEVHMLEKYCERAQLFDGMKLIDLGCGWGSVTLYMAAKYPKASIVSISNSNSQREYIMEKAR 158          
BLAST of mRNA_H-elongata_contig114748.1175.1 vs. uniprot
Match: A0A6U3YXE6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3YXE6_9STRA)

HSP 1 Score: 154 bits (388), Expect = 9.930e-43
Identity = 75/117 (64.10%), Postives = 92/117 (78.63%), Query Frame = 1
Query:    1 QLARKEAMVEELKKMSIAVQQDAANDQHYEVSADFYRLVLGPRLKYSSGLWAKADSTFEESEVAMLEMYCERARLRDGMRIVDLGCGWGSLTLFLAKKYPNSSIASISNSASQKELI 351
            +L  K  +V  LK M +A++ DAAN+QHYEV A FY L LGPR KYSSGLW  +++TFEESE AML  YCERA+++DGM IVDLGCGWGSLTL+LA+K+PN+ I  ISNS SQ+E I
Sbjct:  105 ELQTKMEIVSSLKTMPVAIETDAANEQHYEVPAAFYELCLGPRKKYSSGLWPFSNTTFEESEDAMLAKYCERAQVKDGMNIVDLGCGWGSLTLYLAEKFPNAQITGISNSHSQREHI 221          
BLAST of mRNA_H-elongata_contig114748.1175.1 vs. uniprot
Match: A0A7S3DNC6_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DNC6_9STRA)

HSP 1 Score: 152 bits (385), Expect = 2.310e-42
Identity = 77/122 (63.11%), Postives = 89/122 (72.95%), Query Frame = 1
Query:    1 QLARKEAMVEELKKMSIAVQQDAANDQHYEVSADFYRLVLGPRLKYSSGLWAKADSTFEESEVAMLEMYCERARLRDGMRIVDLGCGWGSLTLFLAKKYPNSSIASISNSASQKELIERKCK 366
            +L  K  +V +LK M IA+  D AN+QHYEV A FY L LGPR KYSSGLW   D+TFEESEVAMLE YC+ A + DGM IVDLGCGWGSLTL LA++YPN+ I  ISNS SQ+E I    K
Sbjct:   96 ELKNKTEIVHKLKTMPIAIATDEANEQHYEVPAKFYDLCLGPRKKYSSGLWPNKDTTFEESEVAMLEHYCQLAGVEDGMSIVDLGCGWGSLTLHLAERYPNAKITGISNSHSQREYILNTAK 217          
BLAST of mRNA_H-elongata_contig114748.1175.1 vs. uniprot
Match: W7TQD4_9STRA (Methyltransferase type 11 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQD4_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.820e-41
Identity = 68/121 (56.20%), Postives = 92/121 (76.03%), Query Frame = 1
Query:    4 LARKEAMVEELKKMSIAVQQDAANDQHYEVSADFYRLVLGPRLKYSSGLWAKADSTFEESEVAMLEMYCERARLRDGMRIVDLGCGWGSLTLFLAKKYPNSSIASISNSASQKELIERKCK 366
            +  K+A V+ELK + IAV   AAN+QHYE+    YRL+LGP +KYS G W KAD++F +SE  MLE+YC RA L DGM ++DLGCGWGS++L++A KYP S + ++SNSA+Q+E IE +CK
Sbjct:   59 MTAKQAYVDELKTLPIAVSTGAANEQHYEIPTALYRLMLGPWMKYSCGYWPKADTSFVDSETEMLELYCRRAELEDGMTVLDLGCGWGSVSLYVAGKYPRSQVYALSNSATQREYIEEECK 179          
BLAST of mRNA_H-elongata_contig114748.1175.1 vs. uniprot
Match: A0A448YYR6_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYR6_9STRA)

HSP 1 Score: 150 bits (379), Expect = 1.850e-41
Identity = 76/117 (64.96%), Postives = 88/117 (75.21%), Query Frame = 1
Query:    1 QLARKEAMVEELKKMSIAVQQDAANDQHYEVSADFYRLVLGPRLKYSSGLWAKADSTFEESEVAMLEMYCERARLRDGMRIVDLGCGWGSLTLFLAKKYPNSSIASISNSASQKELI 351
            +L +K  +VE+LK M IA+  D AN+QHYEV A FY L LGPR KYSSG W     TFEESEVAMLE YCE A + DGM+IVDLGCGWGSLTL LA+ YPN+ I  ISNS+SQ+E I
Sbjct:   98 ELDKKLKIVEKLKTMPIAIATDEANEQHYEVPAKFYDLCLGPRKKYSSGWWPTPTCTFEESEVAMLEKYCEHAGVVDGMKIVDLGCGWGSLTLHLAENYPNAKITGISNSSSQREYI 214          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114748.1175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTB4_ECTSI1.720e-6179.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YH28_9STRA1.260e-5272.73S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A7S4N4U2_9STRA4.360e-4568.10Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S1G3N7_9STRA9.710e-4565.83Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S1CZY2_CYCTE4.370e-4463.79Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A482S8K2_9ARCH1.650e-4361.67Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A6U3YXE6_9STRA9.930e-4364.10Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S3DNC6_9STRA2.310e-4263.11Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
W7TQD4_9STRA1.820e-4156.20Methyltransferase type 11 n=2 Tax=Monodopsidaceae ... [more]
A0A448YYR6_9STRA1.850e-4164.96Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114748contigH-elongata_contig114748:552..1796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.8
Seed ortholog evalue1.8e-46
Seed eggNOG ortholog2880.D8LTB4
EggNOG free text desc.Mycolic acid cyclopropane synthetase
EggNOG OGs2QQW3@2759,COG2230@1
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size372
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114748.1175.1prot_H-elongata_contig114748.1175.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114748 573..1796 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929663.386076-UTR-H-elongata_contig114748:551..5721622929663.386076-UTR-H-elongata_contig114748:551..572Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig114748 552..572 +
1691679110.529327-UTR-H-elongata_contig114748:551..5721691679110.529327-UTR-H-elongata_contig114748:551..572Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig114748 552..572 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929663.402848-CDS-H-elongata_contig114748:572..6151622929663.402848-CDS-H-elongata_contig114748:572..615Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114748 573..615 +
1691679110.5404174-CDS-H-elongata_contig114748:572..6151691679110.5404174-CDS-H-elongata_contig114748:572..615Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114748 573..615 +
1622929663.4185154-CDS-H-elongata_contig114748:1122..12981622929663.4185154-CDS-H-elongata_contig114748:1122..1298Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114748 1123..1298 +
1691679110.5489979-CDS-H-elongata_contig114748:1122..12981691679110.5489979-CDS-H-elongata_contig114748:1122..1298Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114748 1123..1298 +
1622929663.4346156-CDS-H-elongata_contig114748:1664..17961622929663.4346156-CDS-H-elongata_contig114748:1664..1796Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114748 1665..1796 +
1691679110.5588686-CDS-H-elongata_contig114748:1664..17961691679110.5588686-CDS-H-elongata_contig114748:1664..1796Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114748 1665..1796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114748.1175.1

>prot_H-elongata_contig114748.1175.1 ID=prot_H-elongata_contig114748.1175.1|Name=mRNA_H-elongata_contig114748.1175.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
MVEELKKMSIAVQQDAANDQHYEVSADFYRLVLGPRLKYSSGLWAKADST
FEESEVAMLEMYCERARLRDGMRIVDLGCGWGSLTLFLAKKYPNSSIASI
SNSASQKELIERKCKV*
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mRNA from alignment at H-elongata_contig114748:552..1796+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114748.1175.1 ID=mRNA_H-elongata_contig114748.1175.1|Name=mRNA_H-elongata_contig114748.1175.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1245bp|location=Sequence derived from alignment at H-elongata_contig114748:552..1796+ (Himanthalia elongata Himel1 dioecious)
CAGCTTGCCCGCAAAGAGGCCATGGTGGAAGAGCTCAAAAAGATGTCTAT CGCGGTACAACAAGGTCAGCAGGACTCTTCCCTTGCCCCCCTTTTCCCTG CCCCCCCCCCCCTCCCCGACCCACGTAGGCCTCGTCGATCGCAAGATGTT GCCTGACCGGCGTCGGTTTTTAATATATGTATAGCAGGAGTACTAATACG TTGACGTTTTAGCTAAAGCGGGCGAGAAGAGCGAAGTGTTTCCCACCCTT GTATTTTTAATTATAACAATACCCAGCGGGTGTAACACCAGGGGGTCGTC ACGCTGGACTGCCCCCCTCAACACGCTTCTCTGTTCCTTTCGCCGAAGAG AAAGAAAATGAAATGAAGGGCTAGGGCAAGGAGGCTCGCCGCTAACCCGT CGACCGGATGATCTCGAGTGCAAAGGGTGATGCTGCACTGTTTGTAAGCA CTCAGTCAATACGAACAGTGCCAGAAGACGAGGCGTGCCCCCCTTCCCCC TCCGCGTAAGCGGAAGAAGACGCCAACCGCGCGACGAAACCCCCGCCGGC TGACGCAACGGATGATGACAGACGCGGCCAATGACCAACACTACGAGGTC AGCGCGGATTTTTACCGTCTCGTCCTCGGACCTCGACTTAAGTACTCCTC CGGCTTATGGGCCAAGGCCGACTCGACGTTCGAGGAATCAGAGGTGGCCA TGCTGGAGATGTACTGCGAGAGAGCGCGGCTTCGGGACGGAATGAGGGTG AGTGGCTGGTTCTTTCCGCCGCCCGATTTGTCCTCCCGTCACGACTCGCA AAGAGTTTTTGAGTATCAACTTGCTGTCGAATCCCTTCCCCAGAGTAGTA GCAGTACGCGAAACGAATAAAATTTCGTGGACAGGGACGTTATCCGCGTG TGTTCCTTTTCAATTGTACCTTTTTTCAGACGGTCTGCGTGGGGGTTAAC TCTCGTAAGTGTCAAATATACCCAAGCTCGACGCGGCATGCACGGATGCA TCATATCGAGGCCAGAGGATGTTGTTTCCTCGGGGGGGGGGCGAGTTCTG CGTGTTTGTCCGAGGTGCACCCTGCCCCTATCGCAAACGTTGTCGGTTGG TTCTTGGAAGCAGATCGTTGACCTCGGCTGCGGATGGGGATCTCTGACGC TATTCCTGGCGAAAAAGTACCCCAACTCCTCCATCGCCTCGATCTCCAAC TCGGCTTCTCAGAAGGAGCTCATCGAAAGGAAATGCAAGGTATGA
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Coding sequence (CDS) from alignment at H-elongata_contig114748:552..1796+

>mRNA_H-elongata_contig114748.1175.1 ID=mRNA_H-elongata_contig114748.1175.1|Name=mRNA_H-elongata_contig114748.1175.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig114748:552..1796+ (Himanthalia elongata Himel1 dioecious)
ATGGTGGAAGAGCTCAAAAAGATGTCTATCGCGGTACAACAAGATGGTGG
AAGAGCTCAAAAAGATGTCTATCGCGGTACAACAAGACGCGGCCAATGAC
CAACACTACGAGGTCAGCGCGGATTTTTACCGTCTCGTCCTCGGACCTCG
ACTTAAGTACTCCTCCGGCTTATGGGCCAAGGCCGACTCGACGTTCGAGG
AATCAGAGGTGGCCATGCTGGAGATGTACTGCGAGAGAGCGCGGCTTCGG
GACGGAATGAGGACGCGGCCAATGACCAACACTACGAGGTCAGCGCGGAT
TTTTACCGTCTCGTCCTCGGACCTCGACTTAAGTACTCCTCCGGCTTATG
GGCCAAGGCCGACTCGACGTTCGAGGAATCAGAGGTGGCCATGCTGGAGA
TGTACTGCGAGAGAGCGCGGCTTCGGGACGGAATGAGGATCGTTGACCTC
GGCTGCGGATGGGGATCTCTGACGCTATTCCTGGCGAAAAAGTACCCCAA
CTCCTCCATCGCCTCGATCTCCAACTCGGCTTCTCAGAAGGAGCTCATCG
AAAGGAAATGCAAGGTATGAATCGTTGACCTCGGCTGCGGATGGGGATCT
CTGACGCTATTCCTGGCGAAAAAGTACCCCAACTCCTCCATCGCCTCGAT
CTCCAACTCGGCTTCTCAGAAGGAGCTCATCGAAAGGAAATGCAAGGTAT
GA
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