mRNA_H-elongata_contig114111.1127.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114111.1127.1
Unique NamemRNA_H-elongata_contig114111.1127.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig114111.1127.1 vs. uniprot
Match: D7FJM2_ECTSI (GMP_PDE_delta domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJM2_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 7.090e-58
Identity = 94/125 (75.20%), Postives = 100/125 (80.00%), Query Frame = 1
Query:    1 MYHRELKATVPGEILRCSAVSREINFTSRQEISQFRLEQRVFLRGACIEGDTSWIQKICSPEFEWFFDFGFVIPGSTNSWQHIIESAGEDKMLAAEELSGRMTIETTFLDGKVTLFKTLFRVFYE 375
            MYH ELKATVP  IL CSAVSREINFTS++EI QFRLEQRVFL GACIE              EWFFDFGFVIPGSTNSWQ  IESAGED+MLAAE+LSGRMTIETTFLDG+  LFKTL R+FYE
Sbjct:   22 MYHHELKATVPRRILECSAVSREINFTSQEEIRQFRLEQRVFLAGACIE--------------EWFFDFGFVIPGSTNSWQQTIESAGEDRMLAAEDLSGRMTIETTFLDGRTMLFKTLVRIFYE 132          
BLAST of mRNA_H-elongata_contig114111.1127.1 vs. uniprot
Match: A0A835Z4X9_9STRA (Delta subunit of GMP phosphodiesterase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4X9_9STRA)

HSP 1 Score: 147 bits (371), Expect = 2.910e-43
Identity = 75/124 (60.48%), Postives = 88/124 (70.97%), Query Frame = 1
Query:    1 MYHRELKATVPGEILRCSAVSREINFTSRQEISQFRLEQRVFLRGACIEGDTSWIQKICSPEFEWFFDFGFVIPGSTNSWQHIIESAGEDKMLAAEELSGRMTIETTFLDGKVTLFKTLFRVFY 372
            M   E++A VP EIL C AVSRE+NFTS++EI QFRLEQR+FLRGAC+E              EWFFDFGFVIPGSTNSWQ  IE+A  + M    ELSG++TIET+F DGK  + KTL RVFY
Sbjct:   22 MLREEMQARVPKEILECRAVSRELNFTSQEEIRQFRLEQRIFLRGACLE--------------EWFFDFGFVIPGSTNSWQQTIEAAAPEDMRHPAELSGKVTIETSFYDGKTLIAKTLVRVFY 131          
BLAST of mRNA_H-elongata_contig114111.1127.1 vs. uniprot
Match: A0A6A3LLC5_9STRA (GMP_PDE_delta domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3LLC5_9STRA)

HSP 1 Score: 141 bits (356), Expect = 6.600e-40
Identity = 70/124 (56.45%), Postives = 91/124 (73.39%), Query Frame = 1
Query:    1 MYHRELKATVPGEILRCSAVSREINFTSRQEISQFRLEQRVFLRGACIEGDTSWIQKICSPEFEWFFDFGFVIPGSTNSWQHIIESAGEDKMLAAEELSGRMTIETTFLDGKVTLFKTLFRVFY 372
            +Y  E KA +P +IL+CSAVSREINF+S +EISQFRLEQRVFL G+CIE              EW F+FG+VIPGSTN+WQ  IESAG + ML  E +SG++TIET F DG++ + KT++R++Y
Sbjct:  106 IYRVEQKARLPMDILKCSAVSREINFSSAEEISQFRLEQRVFLDGSCIE--------------EWLFNFGYVIPGSTNTWQQTIESAGPENMLDPEMMSGKLTIETAFYDGQLPIAKTVYRIYY 215          
BLAST of mRNA_H-elongata_contig114111.1127.1 vs. uniprot
Match: G4Z211_PHYSP (GMP_PDE_delta domain-containing protein n=14 Tax=Phytophthora TaxID=4783 RepID=G4Z211_PHYSP)

HSP 1 Score: 141 bits (356), Expect = 6.790e-40
Identity = 70/124 (56.45%), Postives = 91/124 (73.39%), Query Frame = 1
Query:    1 MYHRELKATVPGEILRCSAVSREINFTSRQEISQFRLEQRVFLRGACIEGDTSWIQKICSPEFEWFFDFGFVIPGSTNSWQHIIESAGEDKMLAAEELSGRMTIETTFLDGKVTLFKTLFRVFY 372
            +Y  E KA +P +IL+CSAVSREINF+S +EISQFRLEQRVFL G+CIE              EW F+FG+VIPGSTN+WQ  IESAG + ML  E +SG++TIET F DG++ + KT++R++Y
Sbjct:  107 IYRVEQKARLPVDILKCSAVSREINFSSAEEISQFRLEQRVFLDGSCIE--------------EWLFNFGYVIPGSTNTWQQTIESAGPENMLDPEMMSGKLTIETAFYDGQLPIAKTVYRIYY 216          
BLAST of mRNA_H-elongata_contig114111.1127.1 vs. uniprot
Match: A0A8K1C6Q4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6Q4_PYTOL)

HSP 1 Score: 140 bits (353), Expect = 2.150e-39
Identity = 69/120 (57.50%), Postives = 87/120 (72.50%), Query Frame = 1
Query:   13 ELKATVPGEILRCSAVSREINFTSRQEISQFRLEQRVFLRGACIEGDTSWIQKICSPEFEWFFDFGFVIPGSTNSWQHIIESAGEDKMLAAEELSGRMTIETTFLDGKVTLFKTLFRVFY 372
            E +A +P  IL+CSAVSRE+NF+S +EI+QFRLEQRVF +G+CIE              EW F FGFVIPGSTNSWQ  IESAG D ML  E +SG++TIET F DG++ + KT++R+FY
Sbjct:  115 EQEAHIPSSILKCSAVSREVNFSSTEEITQFRLEQRVFFQGSCIE--------------EWLFTFGFVIPGSTNSWQQTIESAGPDNMLDPEVMSGKLTIETGFYDGQMPIAKTVYRIFY 220          
BLAST of mRNA_H-elongata_contig114111.1127.1 vs. uniprot
Match: A0A5D6XY42_9STRA (GMP_PDE_delta domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XY42_9STRA)

HSP 1 Score: 140 bits (353), Expect = 2.540e-39
Identity = 68/124 (54.84%), Postives = 89/124 (71.77%), Query Frame = 1
Query:    1 MYHRELKATVPGEILRCSAVSREINFTSRQEISQFRLEQRVFLRGACIEGDTSWIQKICSPEFEWFFDFGFVIPGSTNSWQHIIESAGEDKMLAAEELSGRMTIETTFLDGKVTLFKTLFRVFY 372
            +Y  E +A +P  IL+CSAVSREINF+S +EI+QFRLEQRVFL G+CIE              EW F+FG+VIPGSTN+WQ  IESAG + ML  E +SG++TIET F +G+  + KT++R+FY
Sbjct:  117 VYTAEQEARIPASILKCSAVSREINFSSAEEITQFRLEQRVFLAGSCIE--------------EWLFEFGYVIPGSTNTWQQTIESAGAENMLDPESISGKLTIETAFYEGQSAIAKTVYRIFY 226          
BLAST of mRNA_H-elongata_contig114111.1127.1 vs. uniprot
Match: A0A067D6C1_SAPPC (GMP_PDE_delta domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D6C1_SAPPC)

HSP 1 Score: 140 bits (353), Expect = 2.610e-39
Identity = 70/125 (56.00%), Postives = 87/125 (69.60%), Query Frame = 1
Query:    1 MYHRELKATVPGEILRCSAVSREINFTSRQEISQFRLEQRVFLRGACIEGDTSWIQKICSPEFEWFFDFGFVIPGSTNSWQHIIESAGEDKMLAAEELSGRMTIETTFLDGKVTLFKTLFRVFYE 375
            MY +E +A VP  IL+C AVSREINF+S++EI  FRLEQRVFL G C+E              EW F FG+VIPGSTNSWQ  IESAG D ML A+ +SG++TIET F D  + + KT+FR++YE
Sbjct:  118 MYEKEQRAVVPKAILQCLAVSREINFSSKEEIQNFRLEQRVFLHGKCLE--------------EWLFAFGYVIPGSTNSWQQTIESAGADNMLPADVISGKITIETGFYDADMLIAKTVFRIYYE 228          
BLAST of mRNA_H-elongata_contig114111.1127.1 vs. uniprot
Match: H3G6U4_PHYRM (GMP_PDE_delta domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G6U4_PHYRM)

HSP 1 Score: 135 bits (339), Expect = 9.120e-39
Identity = 66/117 (56.41%), Postives = 87/117 (74.36%), Query Frame = 1
Query:   22 ATVPGEILRCSAVSREINFTSRQEISQFRLEQRVFLRGACIEGDTSWIQKICSPEFEWFFDFGFVIPGSTNSWQHIIESAGEDKMLAAEELSGRMTIETTFLDGKVTLFKTLFRVFY 372
            A +P +IL+CSAVSREINF+S +EIS+FRLEQRVFL G+CIE              EW F+FG+VIPGSTN+WQ  IESAG + ML  E +SG++TIET F DG++ + KT++R++Y
Sbjct:    1 ARLPVDILKCSAVSREINFSSAEEISRFRLEQRVFLDGSCIE--------------EWIFNFGYVIPGSTNTWQQTIESAGPENMLDPEMMSGKLTIETAFYDGQLPIAKTVYRIYY 103          
BLAST of mRNA_H-elongata_contig114111.1127.1 vs. uniprot
Match: A0A0P1B3K5_PLAHL (Retinal rod rhodopsin-sensitive cgmp 3-cyclic phosphodiesterase subunit delta n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B3K5_PLAHL)

HSP 1 Score: 136 bits (343), Expect = 6.230e-38
Identity = 66/124 (53.23%), Postives = 89/124 (71.77%), Query Frame = 1
Query:    1 MYHRELKATVPGEILRCSAVSREINFTSRQEISQFRLEQRVFLRGACIEGDTSWIQKICSPEFEWFFDFGFVIPGSTNSWQHIIESAGEDKMLAAEELSGRMTIETTFLDGKVTLFKTLFRVFY 372
            +YH E KA +P +IL+CSA+SREINF+S +EIS+FRLEQRVFL G+CIE              EW F FG+VIPGSTN+WQ  IES   + ML  E ++G++TIET F DG++ + KT++R++Y
Sbjct:  107 VYHVEQKAHLPKDILKCSAISREINFSSAEEISKFRLEQRVFLAGSCIE--------------EWIFSFGYVIPGSTNTWQQTIESDEPENMLDPEAMNGKLTIETAFYDGQLPIAKTVYRIYY 216          
BLAST of mRNA_H-elongata_contig114111.1127.1 vs. uniprot
Match: A0A485LJ79_9STRA (Aste57867_22049 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LJ79_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.190e-37
Identity = 66/125 (52.80%), Postives = 85/125 (68.00%), Query Frame = 1
Query:    1 MYHRELKATVPGEILRCSAVSREINFTSRQEISQFRLEQRVFLRGACIEGDTSWIQKICSPEFEWFFDFGFVIPGSTNSWQHIIESAGEDKMLAAEELSGRMTIETTFLDGKVTLFKTLFRVFYE 375
            MY RE KA +P  IL+CS+VSREINF+S +E+ +FRLEQRVF  G C+E              EW F FG+VIP STN+WQ  I++AG D ML A+ +SG +TIET F D  V + KT++R+FYE
Sbjct:  118 MYEREQKAVIPKAILKCSSVSREINFSSLEEVKEFRLEQRVFFNGQCLE--------------EWLFSFGYVIPNSTNTWQQTIDAAGPDAMLPADLISGNITIETGFYDADVVIAKTVYRIFYE 228          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114111.1127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJM2_ECTSI7.090e-5875.20GMP_PDE_delta domain-containing protein n=1 Tax=Ec... [more]
A0A835Z4X9_9STRA2.910e-4360.48Delta subunit of GMP phosphodiesterase n=1 Tax=Tri... [more]
A0A6A3LLC5_9STRA6.600e-4056.45GMP_PDE_delta domain-containing protein n=3 Tax=Ph... [more]
G4Z211_PHYSP6.790e-4056.45GMP_PDE_delta domain-containing protein n=14 Tax=P... [more]
A0A8K1C6Q4_PYTOL2.150e-3957.50Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XY42_9STRA2.540e-3954.84GMP_PDE_delta domain-containing protein n=1 Tax=Py... [more]
A0A067D6C1_SAPPC2.610e-3956.00GMP_PDE_delta domain-containing protein n=2 Tax=Sa... [more]
H3G6U4_PHYRM9.120e-3956.41GMP_PDE_delta domain-containing protein n=2 Tax=Ph... [more]
A0A0P1B3K5_PLAHL6.230e-3853.23Retinal rod rhodopsin-sensitive cgmp 3-cyclic phos... [more]
A0A485LJ79_9STRA1.190e-3752.80Aste57867_22049 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114111contigH-elongata_contig114111:855..1784 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score185.3
Seed ortholog evalue1.8e-44
Seed eggNOG ortholog2880.D7FJM2
KEGG rclassRC00296
KEGG koko:K13758
KEGG ReactionR01234
KEGG Pathwayko00230,map00230
EggNOG free text desc.3',5'-cyclic-nucleotide phosphodiesterase activity
EggNOG OGsKOG4038@1,KOG4038@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGMP phosphodiesterase, delta subunit
Ec32 orthologEc-09_000330.1
Exons4
Model size381
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114111.1127.1prot_H-elongata_contig114111.1127.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114111 855..1784 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929658.7663965-CDS-H-elongata_contig114111:854..9391622929658.7663965-CDS-H-elongata_contig114111:854..939Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114111 855..939 -
1691679108.9377348-CDS-H-elongata_contig114111:854..9391691679108.9377348-CDS-H-elongata_contig114111:854..939Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114111 855..939 -
1622929658.7849007-CDS-H-elongata_contig114111:1196..13021622929658.7849007-CDS-H-elongata_contig114111:1196..1302Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114111 1197..1302 -
1691679108.9490116-CDS-H-elongata_contig114111:1196..13021691679108.9490116-CDS-H-elongata_contig114111:1196..1302Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114111 1197..1302 -
1622929658.8094006-CDS-H-elongata_contig114111:1499..15181622929658.8094006-CDS-H-elongata_contig114111:1499..1518Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114111 1500..1518 -
1691679108.957813-CDS-H-elongata_contig114111:1499..15181691679108.957813-CDS-H-elongata_contig114111:1499..1518Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114111 1500..1518 -
1622929658.825746-CDS-H-elongata_contig114111:1613..17841622929658.825746-CDS-H-elongata_contig114111:1613..1784Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114111 1614..1784 -
1691679108.9669545-CDS-H-elongata_contig114111:1613..17841691679108.9669545-CDS-H-elongata_contig114111:1613..1784Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114111 1614..1784 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114111.1127.1

>prot_H-elongata_contig114111.1127.1 ID=prot_H-elongata_contig114111.1127.1|Name=mRNA_H-elongata_contig114111.1127.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
MYHRELKATVPGEILRCSAVSREINFTSRQEISQFRLEQRVFLRGACIEG
DTSWIQKICSPEFEWFFDFGFVIPGSTNSWQHIIESAGEDKMLAAEELSG
RMTIETTFLDGKVTLFKTLFRVFYET*
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mRNA from alignment at H-elongata_contig114111:855..1784-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114111.1127.1 ID=mRNA_H-elongata_contig114111.1127.1|Name=mRNA_H-elongata_contig114111.1127.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=930bp|location=Sequence derived from alignment at H-elongata_contig114111:855..1784- (Himanthalia elongata Himel1 dioecious)
ATGTACCACCGAGAGCTGAAGGCAACCGTTCCAGGTGAAATCCTTCGATG CTCCGCTGTTTCGAGGGAGATCAACTTCACTTCACGACAGGAGATCAGCC AGTTCCGTCTAGAACAACGAGTGTTTTTGCGGGGAGCATGCATAGAAGGT GATACCTCCTGGATCCAGAAGGTTTAGGGTTAGCGTTAGTCTACTACCTT CAGATACAGTTTTTGCAGAGACCGTGGATCTCAAGCACCAGCGAGTCGAA ATAGCGTGTGACTTAGATATGTTCACCTGAGTTCGGTTTAGTTCCAGAAT ATGTATATAAACATTTATATACATTTATATATGCGCGGTATGTTTTCAAT ATGTGGTCATCAAACCCTCCGAATGGGAAAGCGACCCACACCTCTGTGCG TTTAAATGTTCAACTCTTCGATTGGTTTTCATCGTCCCTCCCTGTCGGGT GTCAAACACAAATACAAACTCCGATGACACAGAATGGTTTTTCGACTTCG GATTCGTTATTCCGGGCTCGACAAATTCATGGCAACACATAATCGAGTCG GCAGGCGAGGACAAAATGCTGGCTGCGGAAGAGCTGAGGTATGGAAAAGG GCGGAATCAACTGATCGACTGAACCTGTTTTCGAAGCCGTCGGCCACGAA GCTACCGTCCGGCTTTACGCACTGCGAGTGAGGGTTATGGTTAGTGTAAC CCCAACCCTAGCCCTAACCGCCTGAAACTGTCGCTAACACAGTTGACACA CGTGCCAACAATGCAATGCCCAGTTCTGGCTCGCTGGAAAGCTTGATGCT TCCCTGCCTCCTTGCCCTCTACTGCTTTACGTTCCTTTGCCCCAGTGGCA GAATGACGATTGAGACGACCTTCTTGGATGGTAAGGTGACGCTCTTCAAG ACCCTTTTCAGAGTATTTTACGAAACATGA
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Coding sequence (CDS) from alignment at H-elongata_contig114111:855..1784-

>mRNA_H-elongata_contig114111.1127.1 ID=mRNA_H-elongata_contig114111.1127.1|Name=mRNA_H-elongata_contig114111.1127.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig114111:855..1784- (Himanthalia elongata Himel1 dioecious)
ATGTACCACCGAGAGCTGAAGGCAACCGTTCCAGGTGAAATCCTTCGATG
CTCCGCTGTTTCGAGGGAGATCAACTTCACTTCACGACAGGAGATCAGCC
AGTTCCGTCTAGAACAACGAGTGTTTTTGCGGGGAGCATGCATAGAAGGT
GATACCTCCTGGATCCAGAAGATGTACCACCGAGAGCTGAAGGCAACCGT
TCCAGGTGAAATCCTTCGATGCTCCGCTGTTTCGAGGGAGATCAACTTCA
CTTCACGACAGGAGATCAGCCAGTTCCGTCTAGAACAACGAGTGTTTTTG
CGGGGAGCATGCATAGAAGGTGATACCTCCTGGATCCAGAAGATATGTTC
ACCTGAGTTCGATATGTTCACCTGAGTTCGAATGGTTTTTCGACTTCGGA
TTCGTTATTCCGGGCTCGACAAATTCATGGCAACACATAATCGAGTCGGC
AGGCGAGGACAAAATGCTGGCTGCGGAAGAGCTGAGAATGGTTTTTCGAC
TTCGGATTCGTTATTCCGGGCTCGACAAATTCATGGCAACACATAATCGA
GTCGGCAGGCGAGGACAAAATGCTGGCTGCGGAAGAGCTGAGTGGCAGAA
TGACGATTGAGACGACCTTCTTGGATGGTAAGGTGACGCTCTTCAAGACC
CTTTTCAGAGTATTTTACGAAACATGATGGCAGAATGACGATTGAGACGA
CCTTCTTGGATGGTAAGGTGACGCTCTTCAAGACCCTTTTCAGAGTATTT
TACGAAACATGA
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