mRNA_H-elongata_contig114012.1118.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114012.1118.1
Unique NamemRNA_H-elongata_contig114012.1118.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig114012.1118.1 vs. uniprot
Match: D7G6W2_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W2_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 9.830e-10
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    4 GKLAEADPLYVRAIEIGEKTLGAEHPTVATRLGNRARLLSAQ 129
            GK AEADPLY+RAIEIGE TLG +HP +AT+L NRA LL +Q
Sbjct:  613 GKYAEADPLYLRAIEIGENTLGPDHPALATQLNNRAGLLGSQ 654
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BLAST of mRNA_H-elongata_contig114012.1118.1 vs. uniprot
Match: D8LPW2_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPW2_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.310e-9
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 QGKLAEADPLYVRAIEIGEKTLGAEHPTVATRLGNRARL 117
            QGK  E DPLY+RAIEIGEKTLG +HP +AT L NRAR+
Sbjct:   50 QGKYDEGDPLYLRAIEIGEKTLGPDHPALATSLNNRARM 88
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BLAST of mRNA_H-elongata_contig114012.1118.1 vs. uniprot
Match: A0A6H5KSC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSC7_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 4.280e-9
Identity = 29/44 (65.91%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 QGKLAEADPLYVRAIEIGEKTLGAEHPTVATRLGNRARLLSAQV 132
            QGK AEADPLY+RAIE+ EK LG +HP +AT + NRA LL AQ 
Sbjct:  340 QGKHAEADPLYLRAIEVAEKMLGRDHPDLATSINNRAELLRAQA 383
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BLAST of mRNA_H-elongata_contig114012.1118.1 vs. uniprot
Match: A0A6H5JUC1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC1_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 3.940e-8
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:   22 DPLYVRAIEIGEKTLGAEHPTVATRLGNRARLLSAQVE 135
            DPL++RAIEIGEKTLG +HP +ATRL NRA LL AQ E
Sbjct:  258 DPLFLRAIEIGEKTLGPDHPDLATRLNNRAELLRAQGE 295
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BLAST of mRNA_H-elongata_contig114012.1118.1 vs. uniprot
Match: A0A6H5K0C4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0C4_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 4.700e-8
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 QGKLAEADPLYVRAIEIGEKTLGAEHPTVATRLGNR 108
            +GK AEADPLY+RAIEIGEK LG +HP +ATRL NR
Sbjct:  168 RGKYAEADPLYLRAIEIGEKMLGPDHPDLATRLNNR 203
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BLAST of mRNA_H-elongata_contig114012.1118.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 7.660e-8
Identity = 38/93 (40.86%), Postives = 49/93 (52.69%), Query Frame = 1 
Query:    1 QGKLAEADPLYVRAIEIGEKTLGAEHPTVATRLGNRARLLSAQVERRGRGQGRRWEGQACTPHSRVLI---FEKYQVFSPLDT*LCMQPFHSK 270
            +G  AEADP  +RAIEIGEK LG EHP +A  L NRA LL AQ+    R    + +G       + ++   F + Q    L T L   PF S+
Sbjct:  643 EGNFAEADPFNLRAIEIGEKVLGPEHPDLAVWLNNRAELLRAQLLNNPRTGLLKAQGGVVESAGQGVVEQLFARCQSPLALTTLLTYLPFTSQ 735
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BLAST of mRNA_H-elongata_contig114012.1118.1 vs. uniprot
Match: A0A6H5L045_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L045_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 3.530e-7
Identity = 27/42 (64.29%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    4 GKLAEADPLYVRAIEIGEKTLGAEHPTVATRLGNRARLLSAQ 129
            GK AEADPLY+RAI+IG+K LG +HP +A  L NRA LL  Q
Sbjct:   10 GKYAEADPLYLRAIDIGKKMLGPDHPDLAAWLNNRAGLLKKQ 51
[Close]
BLAST of mRNA_H-elongata_contig114012.1118.1 vs. uniprot
Match: D8LLM3_ECTSI (Kinesin light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLM3_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 4.720e-7
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    4 GKLAEADPLYVRAIEIGEKTLGAEHPTVATRLGNRARLLSAQ 129
            G+  EADPLY+RAIE+GEK LG +HP +AT L N+A LL  Q
Sbjct:    8 GEDTEADPLYLRAIEVGEKKLGPDHPDLATWLNNQAVLLRKQ 49
[Close]
BLAST of mRNA_H-elongata_contig114012.1118.1 vs. uniprot
Match: A0A6H5K2T5_9PHAE (PK_Tyr_Ser-Thr domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T5_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 4.230e-6
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 QGKLAEADPLYVRAIEIGEKTLGAEHPTVATRLGNRARLLSAQ 129
            QGK AEADPL +RA++IG+  LG +HP +A  LGNRA LL  Q
Sbjct:  553 QGKYAEADPLILRAMDIGKSPLGPDHPDLALWLGNRACLLGQQ 595
[Close]
BLAST of mRNA_H-elongata_contig114012.1118.1 vs. uniprot
Match: D8LQL3_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQL3_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 5.800e-6
Identity = 27/42 (64.29%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 QGKLAEADPLYVRAIEIGEKTLGAEHPTVATRLGNRARLLSA 126
            QGK  EAD L +R IE+GE TLG +HP VA RL NRA LL A
Sbjct:  297 QGKYVEADRLCLRDIEMGEDTLGPDHPDVAIRLNNRAELLRA 338
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114012.1118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7G6W2_ECTSI9.830e-1071.43NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D8LPW2_ECTSI1.310e-971.79TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KSC7_9PHAE4.280e-965.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUC1_9PHAE3.940e-873.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K0C4_9PHAE4.700e-875.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJK0_9PHAE7.660e-840.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L045_9PHAE3.530e-764.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLM3_ECTSI4.720e-761.90Kinesin light chain-like protein n=1 Tax=Ectocarpu... [more]
A0A6H5K2T5_9PHAE4.230e-660.47PK_Tyr_Ser-Thr domain-containing protein n=1 Tax=E... [more]
D8LQL3_ECTSI5.800e-664.29TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114012contigH-elongata_contig114012:316..612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue3.9e-08
Seed eggNOG ortholog2880.D7G6W2
KEGG koko:K10407
KEGG Pathwayko05132,map05132
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
Ec32 ortholog descriptionTPR repeat-containing protein
Ec32 orthologEc-15_001920.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Hectar predicted targeting categoryother localisation
Exons1
Model size297
Cds size243
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929657.9405208-CDS-H-elongata_contig114012:315..5581622929657.9405208-CDS-H-elongata_contig114012:315..558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114012 316..558 +
1691679108.5940735-CDS-H-elongata_contig114012:315..5581691679108.5940735-CDS-H-elongata_contig114012:315..558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114012 316..558 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929657.9554882-UTR-H-elongata_contig114012:558..6121622929657.9554882-UTR-H-elongata_contig114012:558..612Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig114012 559..612 +
1691679108.610291-UTR-H-elongata_contig114012:558..6121691679108.610291-UTR-H-elongata_contig114012:558..612Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig114012 559..612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114012.1118.1prot_H-elongata_contig114012.1118.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114012 316..558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114012.1118.1

>prot_H-elongata_contig114012.1118.1 ID=prot_H-elongata_contig114012.1118.1|Name=mRNA_H-elongata_contig114012.1118.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
QGKLAEADPLYVRAIEIGEKTLGAEHPTVATRLGNRARLLSAQVERRGRG
QGRRWEGQACTPHSRVLIFEKYQVFSPLDT*
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mRNA from alignment at H-elongata_contig114012:316..612+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114012.1118.1 ID=mRNA_H-elongata_contig114012.1118.1|Name=mRNA_H-elongata_contig114012.1118.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=297bp|location=Sequence derived from alignment at H-elongata_contig114012:316..612+ (Himanthalia elongata Himel1 dioecious)
CAGGGCAAGCTCGCGGAGGCGGACCCGCTGTACGTCCGAGCGATCGAGAT
CGGCGAGAAGACACTCGGGGCAGAACACCCCACGGTTGCCACCCGACTCG
GGAACCGCGCTAGGCTTCTTTCGGCGCAGGTTGAGAGGAGGGGTCGGGGC
CAAGGAAGGAGATGGGAGGGGCAGGCGTGCACACCACACTCAAGGGTGTT
GATTTTTGAAAAGTACCAGGTGTTTAGTCCACTTGATACTTGATTGTGTA
TGCAACCTTTTCATTCGAAGTGAGATTCGGATGATGAGACAAGTCCG
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Coding sequence (CDS) from alignment at H-elongata_contig114012:316..612+

>mRNA_H-elongata_contig114012.1118.1 ID=mRNA_H-elongata_contig114012.1118.1|Name=mRNA_H-elongata_contig114012.1118.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig114012:316..612+ (Himanthalia elongata Himel1 dioecious)
CAGGGCAAGCTCGCGGAGGCGGACCCGCTGTACGTCCGAGCGATCGAGAT
CGGCGAGAAGACACTCGGGGCAGAACACCCCACGGTTGCCACCCGACTCG
GGAACCGCGCTAGGCTTCTTTCGGCGCAGGTTGAGAGGAGGGGTCGGGGC
CAAGGAAGGAGATGGGAGGGGCAGGCGTGCACACCACACTCAAGGGTGTT
GATTTTTGAAAAGTACCAGGTGTTTAGTCCACTTGATACTTGACAGGGCA
AGCTCGCGGAGGCGGACCCGCTGTACGTCCGAGCGATCGAGATCGGCGAG
AAGACACTCGGGGCAGAACACCCCACGGTTGCCACCCGACTCGGGAACCG
CGCTAGGCTTCTTTCGGCGCAGGTTGAGAGGAGGGGTCGGGGCCAAGGAA
GGAGATGGGAGGGGCAGGCGTGCACACCACACTCAAGGGTGTTGATTTTT
GAAAAGTACCAGGTGTTTAGTCCACTTGATACTTGA
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