mRNA_H-elongata_contig11335.1077.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig11335.1077.1 vs. uniprot
Match: A0A6H5JQD1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQD1_9PHAE) HSP 1 Score: 468 bits (1205), Expect = 4.500e-162 Identity = 243/362 (67.13%), Postives = 290/362 (80.11%), Query Frame = 1
Query: 13 FRLSEEALASIADLDDHPVEDTDAARADRMLASFESLPKHEREGMGLWDLEGIRKMPLYERLAKLQDLWAVRQAELREAYDAIPKVDEVLVKRINVLRDPDASETALVTTLSDLEDLLTDIDMARDFHTLGGFPILTSTLVESNSESVREMGAWVIGTAVKNQPENQLWVLEDGPDSKPSALDLLLRNAAVAATSSLRSKIVYALSACVSNNSDVQLQFGAMQGETVLAMLYDAHGSDPRVKIKILTLLSDLLNEAARGSPAAALAIVPVGTTATSGGQWCNRVDEALKQTSSPVALEKALDALMSLAPSCREQFKELETKENVEGLAQQCRTSASPDMEQRGVEFHKELALKLEECAMALR 1098
F LS EALASIADLDDHP+ED DAARADRMLA+ ES+P+ ER+GM L D E +R PL ERLA+LQ LW VRQ ELREAYDA+PKV+E+L++RI++L + DA++ AL L+DLEDLL+DIDMARDFHT+GGFP L S L S E VRE+ AW +GTAVKN+PE+QLWVLEDGPDS+PS L LLL NA A T +LRSK+VYALSAC++NN DVQLQFG+ GE VL+ +YDA GSD RV+IK LTL+SDLL EAARGSPAA LA +PVG+TA+SGG WC RVDEAL+ SP ALEKA++A+ S PSCR+QF +L+TK +EGLAQQCRTS E E+HKEL KLEECA+ALR
Sbjct: 41 FDLSTEALASIADLDDHPIEDNDAARADRMLAALESIPEGERQGMDL-DAEALRSKPLAERLAELQGLWEVRQQELREAYDAMPKVNELLMERIDILNNADATDGALTGALTDLEDLLSDIDMARDFHTIGGFPTLASMLRCSRPEGVRELAAWAVGTAVKNEPEHQLWVLEDGPDSQPSVLALLLENAMAATTPTLRSKVVYALSACLTNNGDVQLQFGSRMGEAVLSAMYDADGSDRRVRIKTLTLMSDLLQEAARGSPAAVLATMPVGSTASSGGAWCRRVDEALQHAHSPAALEKAIEAVQSFTPSCRDQFAQLDTKRRLEGLAQQCRTSPPEGFEVAEEEYHKELTQKLEECAVALR 401
BLAST of mRNA_H-elongata_contig11335.1077.1 vs. uniprot
Match: A0A835Z7K3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7K3_9STRA) HSP 1 Score: 146 bits (368), Expect = 1.070e-35 Identity = 125/376 (33.24%), Postives = 171/376 (45.48%), Query Frame = 1
Query: 19 LSEEALASIADLDDHPVEDTDAARADRMLASFESLPKHEREGMGLWDLEGIRKMPLYERLAKLQDLWAVRQAELREAYDAIPKVDEVLVKRINVLRDPDASETALVTTLSDLEDLLTDIDMARDFHTLGGFPILTSTLVESNSESVREMGAWVIGTAVKNQPENQLWVLEDGP----DSKPS-----------------------------------------------------ALDLLLRNAAVAATSSLRSKIVYALSACVSNNSDVQLQFGAMQGETVL----AMLYDAHGSDPR-VKIKILTLLSDLLNEAAR--GSPAAALAIVPVGTTATSGGQWCNRVDEALKQTSSP---VALEKALDALMSLAPSC 945
L + SI +DDHPV+DT AR RML + LP+ E+E M L+ I + ER LQ LW RQAEL+E Y +P ++L I +LR + + L+ L DLED L+D+DMARDFHTLGG+ L + L + +VRE AWVIGTAVKN E W LE GP D+ S A+D LL A A + L+ K +YAL++ + +N+ Q F G L A D G+ R + K +TL+SD++ + A GS A+A +WC + L + + LE+ALDA + LAP C
Sbjct: 91 LEKRTADSIRGIDDHPVQDTPEARTQRMLEALLELPREEQERM---QLDAILALDPSERPPALQALWERRQAELKEIYAGMPTPAKILGSLIAILRSEASGDAVLLDALLDLEDHLSDVDMARDFHTLGGWHPLQALLHAERAPAVREHAAWVIGTAVKNVIEFHGWALETGPAAAADASESVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAVAGAGDGLNAIDRLLECVADARHAGLQGKALYALASALRHNARAQAHFVTTGGLDALRNAAATAADDGGAAARGLLTKAITLVSDIVADEAHEEGSGGGAVA-----AGVARDERWCVLLHALLLRADAARGGTQLERALDAALVLAPLC 458
BLAST of mRNA_H-elongata_contig11335.1077.1 vs. uniprot
Match: A0A7R9U9J5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9J5_9STRA) HSP 1 Score: 114 bits (284), Expect = 1.010e-24 Identity = 98/320 (30.63%), Postives = 150/320 (46.88%), Query Frame = 1
Query: 7 GMFRLSEEALASIADLDDHPVEDTDAARADRMLASFESLPKHEREGMGLWDLEGIRKMPLYERLAKLQDLWAVRQAELREAYDAIPKVDEVLVKRINVLRDPDASETALVTTLSDLEDLLTDIDMARDFHTLGGFPILTSTLVESNSESVREMGAWVIGTAVKNQPENQLWVLEDGPDSKPSALDLLLRNAAV------AATSSLRSKIVYALSACVSNNSDVQLQFGAMQGETVLAMLYDAHGSDPRVKIKILTLLSDLLNEAARGSPAAALAIVPVGTTATSGG----QWCNRVDE---ALKQTSSPVALEKALDALM 927
G L+E + + + P DA R + M S LP E G+ E +R+ +W RQ +LREA +++ + ++RI VL D+SE ++ L LED L DIDMARDFHT+GG+P LT L +S++E VR A V+G V+N PE Q WV E S + + + V A+T+ +SK + ALS + N+ + F + G L L D D R+ ++ + ++SDL EAA ++ GG +WC R ++ A K + L +A+ L+
Sbjct: 72 GAQDLTETQVVATDSAAEEPASAVDAGR-EMMKESLLKLPDAELARYGVTHAELSTPGAWEDRI---DGIWQKRQQDLREAIESMGSHVNIFLERIMVLSAADSSEEDVMKVLLQLEDDLMDIDMARDFHTVGGWPALTGLLADSHAEDVRCQAALVVGNTVRNTPEFQAWVSEVPMGSAADVEEATMMHLLVSMMNSSASTAKEQSKALSALSGALYNHVENLQLFADLDGSAKLLALLDDAVED-RLSLRAIRIVSDLAFEAAESGDEELKGLL--------GGIFDARWCRRTEDLASAAKGAGTDDRLSEAVSQLI 378
BLAST of mRNA_H-elongata_contig11335.1077.1 vs. uniprot
Match: W7TQS8_9STRA (Armadillo-like helical n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQS8_9STRA) HSP 1 Score: 102 bits (253), Expect = 5.170e-20 Identity = 112/384 (29.17%), Postives = 162/384 (42.19%), Query Frame = 1
Query: 85 ARADRMLASFESLPKHEREGMGLWDL----------------EGIRKMPLYERLAKLQDLWAVRQAELREAYDAIPKVDEVLVKRINVLRDPDASETALVTTLSDLEDLLTDIDMARDFHTLGGFPILTSTLV-ESNSESVREM---GAWVIGTAVKNQPENQLWVLEDGPDSKPSALDLLLRNAAVAATSS---------LRSKIVYALSACVSNNSDVQLQFGAMQGETVLAML------------YDAHGSDPRVKIKILTLLSDLLNEAARGSPAAALAIVPV----------------GTTATSGGQWCNRVDEALKQT------SSPVALEKALDALMSLAPSCREQFKELETKENVEGLAQQCRTSASPDMEQRGVE 1047
+R ML LP ER MG+ L EG + +++ LWA RQ L +AY+ + K E L + I VL++ E ++ L +LED L+D+DMA+DF+TLGG+P+L S L E E RE+ AWV+G AVKN Q WVLE G + SAL LL T + L K VYA+++ N VQ + G VL L + G + +K++ DL EA + + AAAL + G T+ + WC + L++ ALE L+A+ L C Q + E VE L ++ R + + GV+
Sbjct: 174 SRRGTMLKVLSGLPPQERASMGIDSLLASRPRAGEALGEEVVEGEEREEERAFWKQVETLWAERQDLLLQAYENMLKPAEELGRLIGVLKE--GGEEEVMRALMELEDWLSDVDMAQDFYTLGGWPLLVSKLGWEGGREGGREVQWRAAWVVGNAVKNDRHFQAWVLEGGKEGGASALTRLLTICREGGTEAWGEGEEEEELLRKAVYAVTSAARGNPAVQAKLVEEGGLEVLGHLLHSSVPPSPGSSHQRKGQRRALCLKLIAFAQDLALEA-KQAVAAALEVAEARHPPSIXXXXXXXLLAGVTSPA---WCEGILGLLEEVVGGEGGREARALEGVLEAMQLLHVDCVRQGRWEEGGREVERLLRRAREVVEEEDWKEGVD 551
BLAST of mRNA_H-elongata_contig11335.1077.1 vs. uniprot
Match: A0A1W0A7I5_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A7I5_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 2.060e-19 Identity = 87/287 (30.31%), Postives = 140/287 (48.78%), Query Frame = 1
Query: 160 LEGIRKMPLYERLAK------LQDLWAVRQAELREAYDAIPKVDEVLVKRINVLRDP--DASETA--LVTTLSDLEDLLTDIDMARDFHTLGGFPILTSTLVESNSESVREMGAWVIGTAVKNQPENQLWVLEDGPDSKPSALDLLLRNAAVAATSSLRSKIVYALSACVSNNSDVQLQFGAMQGETVLAMLYDAHGSDPRVKIKILTLLSDLLNEAARGSPAAALAIVPVGTTATSGGQWCNRVDEALKQTSSPVALEKALDALMSLAPSCREQFKELET-KENVE 987
L+G+ Y +L+K + LW RQAEL+EA +AI + I+ L P DA+ A L+++L LE + DID ARDF+T+GG T L+ S+ VR AWV+G+A+K+ + Q W LE G + P LD L +++ K +YALSA + +N+ Q F +G T+L L A + +++K L L LL E + LA + + +C + L + SP + ++ ++ S + ++ T +EN+E
Sbjct: 153 LDGMNIQQAYSKLSKEEFAAYISKLWKARQAELKEASEAIRNEGLYMQNLIDTLLSPAPDANTYAKGLLSSLEKLEWEVQDIDKARDFNTMGGL-FATIQLLNSSDLEVRSQAAWVVGSAIKHFQDAQTWALEAG--AMPPLLDALSTINNSKQHFNMQRKALYALSALLQHNTKCQSVFVQNEGVTILTKLAGATMAPTPLRLKALLALHHLLVEYQHDQSNSVLAEI---NSVIHSSSYCTVARDVLNPSLSPKQALQVMEIMVETLASPPSRCNQVITGEENIE 433
BLAST of mRNA_H-elongata_contig11335.1077.1 vs. uniprot
Match: A0A7S2RJU1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJU1_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 1.980e-18 Identity = 80/243 (32.92%), Postives = 119/243 (48.97%), Query Frame = 1
Query: 100 MLASFESLPKHEREGMGLWDL--EGIRKMPLYERLAKLQDLWAVRQAELREAYDAIPKVDEVLVKRINVLRDPDASETALVTTLSDLEDLLTDIDMARDFHT-LGGFPILTSTLVESNSESVREMGAWVIGTAVKNQPENQLWVLEDG-------PDSKPSALDLLLRNAAVAATSSLR---SKIVYALSACVSNNSDVQLQFGAMQG----ETVLAMLYDAHGSDPRVKIKILTLLSDLLNE 777
M+ SF LP E+E MG L EG+ + K+ LW RQ EL+ A +A+ + + L I +R D E ++ L+DLE+ L+D+DMARD H LGG+P L L S +R A VIGTA+KN+P Q W+LE P +AL LL T ++ + +YAL++ + +N Q F + G + +L D +P + K+ L+ D+L E
Sbjct: 86 MIRSFLRLPLAEQERMGFTSLYQEGMLLDDIDSDALKV--LWEQRQEELKAAMEAMQEAADTLSSIIRQIRSGD--EESVEAALADLEEHLSDVDMARDLHNALGGWPPLVRLLSSDQSPRIRAGAALVIGTAIKNEPVFQSWILESAAESVDVNPQQNETALSSLLGMLEEQGTGDVQVMHRRSMYALASALRHNLRNQAAFMELGGLERLQALLVKSCDGGLENPALVSKLAALVFDVLEE 324
BLAST of mRNA_H-elongata_contig11335.1077.1 vs. uniprot
Match: A0A7S2FHY2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FHY2_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 1.220e-17 Identity = 63/157 (40.13%), Postives = 89/157 (56.69%), Query Frame = 1
Query: 76 TDAARADRMLASFESLPKHEREGMGLWDLEGIRKMPLYERL-AKLQDLWAVRQAELREAYDAIPKVDEVLVKRINVLRDP----DASETALVTTLSDLEDLLTDIDMARDFH-TLGGFPILTSTLVESNSESVREMGAWVIGTAVKNQPENQLWVLE 528
T ++ ++ M+ + +LP E++ +G L K E L A L+ LW VRQ EL EA A + + L I L+ A + ++ L+ LED L+D+DMARDFH LGG+P LT+ L+ + S VR A V+GTAVKNQ E Q W+LE
Sbjct: 44 TVSSPSELMIRTLSALPVVEQDRIGFTALMDKSKASGEEALEADLRSLWEVRQVELEEAMAATEESADFLAALIKTLKSHVDSNSADDETVLDALNGLEDHLSDMDMARDFHDALGGWPSLTNLLLPTQSLQVRAAAALVMGTAVKNQDEFQGWILE 200
BLAST of mRNA_H-elongata_contig11335.1077.1 vs. uniprot
Match: T0QUY5_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QUY5_SAPDV) HSP 1 Score: 93.6 bits (231), Expect = 2.760e-17 Identity = 88/296 (29.73%), Postives = 131/296 (44.26%), Query Frame = 1
Query: 160 LEGIRKMPLYERLAK------LQDLWAVRQAELREAYDAIPKVDEVLVKRINVLRDPDASETALVTTLSDLEDLLTDIDMARDFHTLGGFPILTSTLVESNSESVREMGAWVIGTAVKNQPENQLWVLEDGPDSKPSALDLLLRNAAVAATSSLRSKIVYALSACVSNNSDVQLQFGAMQGETVLAMLYDAHGSDPRVKIKILTLLSDLLNE-AARGSPAAALAIVPVGTTATSGGQWCNRVDEALKQTSSPVALEKALDALMSLAPSCREQFKELETKENVEGLAQQCRTSASPD 1026
L+GI + L+K ++ LW RQAEL+EA +AI + + I+ L P ++ L+ LE + D+D ARDF+TLGG + T + + VR WV+G+AVK+ E Q W L+ G + P L+ L A +++ K +YALSA + N+ Q F + G +L L + ++++K + +L LL E AA S AA + + D L +E ALMS SC VE L RT S D
Sbjct: 170 LDGINIHEAHAHLSKEAFAAYVEKLWKARQAELKEASEAIRNEAQYMQTLIDALLAPTTPTDDVLDALTQLEWEVQDLDKARDFNTLGGLAV-TVQFLNATDLDVRAQAMWVVGSAVKHFEEAQTWALQAG--AVPHLLESLAMPLQDKAVVAMQRKALYALSALIQGNAKCQAVFLSQDGIRILNALAANTEAPLQLRLKAVLVLHHLLAEHAADPSRAADIHAAIHASDIYCAATAALLTDPTLTPQVGLQVMEALAQALMSPPSSCTAAITTPTVAARVEALDTAWRTDPSLD 462
BLAST of mRNA_H-elongata_contig11335.1077.1 vs. uniprot
Match: A0A067CKG1_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CKG1_SAPPC) HSP 1 Score: 93.2 bits (230), Expect = 3.510e-17 Identity = 87/296 (29.39%), Postives = 134/296 (45.27%), Query Frame = 1
Query: 160 LEGIRKMPLYERLAK------LQDLWAVRQAELREAYDAIPKVDEVLVKRINVLRDPDASETALVTTLSDLEDLLTDIDMARDFHTLGGFPILTSTLVESNSESVREMGAWVIGTAVKNQPENQLWVLEDGPDSKPSALDLLLRNAAVAATSSLRSKIVYALSACVSNNSDVQLQFGAMQGETVLAMLYDAHGSDPRVKIKILTLLSDLLNE-AARGSPAAALAIVPVGTTATSGGQWCNRVDEALKQTSSPVALEKALDALMSLAPSCREQFKELETKENVEGLAQQCRTSASPD 1026
L+GI + L+K ++ LW RQAEL+EA +AI + + I+ L P ++ L+ LE + D+D ARDF+TLGG ++T + + +VR WV+G+A+K+ E Q W L+ G + P L L + A +++ K +YALSA + +N+ Q A G +L L + ++++K + +L LL E AA S AA + T A D L +E ALMS C +V+ L RT S D
Sbjct: 155 LDGINIHDAHAHLSKEAFAAYVEKLWKARQAELKEASEAIRNEAKYMQTLIDALLAPTTPTDDVLDALTKLEWEVQDLDKARDFNTLGGL-VVTVQFLNATDLAVRAQAMWVVGSAIKHFEEAQNWALQAG--AVPHLLQSLAMPISDKAVVAMQRKALYALSALLQSNAKCQAVLLAQDGVRILNALAANANAPLQLRLKAVLVLHHLLAEHAADPSRAADVHAAVHATDAYCAATAALLTDPTLTPKLGLQVMEALAQALMSPPSKCTAALTTPAVAAHVKALDTAWRTDPSLD 447
BLAST of mRNA_H-elongata_contig11335.1077.1 vs. uniprot
Match: B7FVZ2_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FVZ2_PHATC) HSP 1 Score: 93.2 bits (230), Expect = 4.440e-17 Identity = 123/418 (29.43%), Postives = 179/418 (42.82%), Query Frame = 1
Query: 97 RMLASFESLPKHEREGMG---------LWDLEGIRKMPLYERLAKLQDLWAVRQAELREAYDAIPKVDEVLVKRINV------LRDP-----DASETALVTTLSDLEDLLTDIDMARDFHTLGGFPIL----------------------TSTLVESNSESVREMGAWVIGTAVKNQPENQLWVLED---GPDSKPS------------ALDLLLRNAAVAATS----SLRSKIVYALSACVSNNSDVQLQFG---------AMQGETVLAMLYDAHGSD---PRVKIKILTLLSDLLNEA--ARGSPAAALA--------IVPVGTTATSGGQWCNRVDEALKQTSSPVALEKALDALMSLAPSCREQFKELETKENV-EGLAQQCRTSASPDMEQRGVEFHKELALKLEECAMALR 1098
+M + SLP+ E+ MG L L ++ R+A+L W RQAELRE + A + D + R + LRDP D S++ +V+ L DLED L D+DMARDFHTLGG+P+L TST S+ S++ AWV+GTAVKN E W LE+ G +S + LD L + TS L+ K +YAL + + N+ Q +F A + T+LA D G ++ +++ L +DLL EA P A A + T+ + WC+ + AL+Q P E AL +++LA C + +L E V + +C + D FH+E A E LR
Sbjct: 130 KMHETLTSLPEDEQARMGGIPALPGSTLSSLTPEQREAFATRMAQL---WEERQAELRE-FQAEFEADLPAILRTRIAQLQDYLRDPSADALDPSQSIIVSVLRDLEDQLVDLDMARDFHTLGGWPVLVALVTDDAHQPPFWQQSPNQTDTSTETASHVRSIQAHAAWVLGTAVKNTGEFAPWALEELTLGNESSIARQTIATTSTLRVVLDQFLASTLPQETSPALEQLQVKTLYALGSLLRGNALAQARFLRDYHGPDQLASRVNTLLAT-GDVRGVSRHTTKLTNRLMALATDLLAEANAVTSQPEHASAEPQSKQRFLSDELITSFTTQPWCSSLLTALEQ---PPLQETALTVVVALAAHC--DWDDLRLVEEVLVDIRAKCHGKDTGDNASPEDSFHEERASLASEALQLLR 537 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11335.1077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11335.1077.1 >prot_H-elongata_contig11335.1077.1 ID=prot_H-elongata_contig11335.1077.1|Name=mRNA_H-elongata_contig11335.1077.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=364bp MFRLSEEALASIADLDDHPVEDTDAARADRMLASFESLPKHEREGMGLWDback to top mRNA from alignment at H-elongata_contig11335:535..2215+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig11335.1077.1 ID=mRNA_H-elongata_contig11335.1077.1|Name=mRNA_H-elongata_contig11335.1077.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1681bp|location=Sequence derived from alignment at H-elongata_contig11335:535..2215+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig11335:535..2215+ >mRNA_H-elongata_contig11335.1077.1 ID=mRNA_H-elongata_contig11335.1077.1|Name=mRNA_H-elongata_contig11335.1077.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2184bp|location=Sequence derived from alignment at H-elongata_contig11335:535..2215+ (Himanthalia elongata Himel1 dioecious)back to top |